RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 ZNF790Q6PG37 636 aa21.34■■□□□ 1.01
LMX1B-204ENST00000561065 KCNQ3O43525 872 aa21.33■■□□□ 1.01
LMX1B-204ENST00000561065 GRIN3BO60391 1043 aa21.33■■□□□ 1.01
LMX1B-204ENST00000561065 TTC5Q8N0Z6 440 aa21.33■■□□□ 1.01
LMX1B-204ENST00000561065 FCHSD2O94868 740 aa21.32■■□□□ 1
LMX1B-204ENST00000561065 BCORQ6W2J9 1755 aa21.32■■□□□ 1
LMX1B-204ENST00000561065 USPL1Q5W0Q7 1092 aa21.31■■□□□ 1
LMX1B-204ENST00000561065 ARFGEF1Q9Y6D6 1849 aa21.31■■□□□ 1
LMX1B-204ENST00000561065 KDM3BQ7LBC6 1761 aa21.31■■□□□ 1
LMX1B-204ENST00000561065 MCM10Q7L590 875 aa21.3■■□□□ 1
LMX1B-204ENST00000561065 BCL2L12Q9HB09 334 aa21.3■■□□□ 1
LMX1B-204ENST00000561065 PARP3Q9Y6F1 533 aa21.3■■□□□ 1
LMX1B-204ENST00000561065 ADCY9O60503 1353 aa21.3■■□□□ 1
LMX1B-204ENST00000561065 LAMB4A4D0S4 1761 aa21.3■■□□□ 1
LMX1B-204ENST00000561065 DCTN1Q14203 1278 aa21.29■■□□□ 1
LMX1B-204ENST00000561065 POLRMTO00411 1230 aaKnown RBP21.29■■□□□ 1
LMX1B-204ENST00000561065 NARFQ9UHQ1 456 aa21.29■■□□□ 1
LMX1B-204ENST00000561065 DLEC1Q9Y238 1755 aa21.28■■□□□ 1
LMX1B-204ENST00000561065 A0A0G2JLW4 131 aa21.28■■□□□ 1
LMX1B-204ENST00000561065 CANXP27824 592 aaKnown RBP21.28■■□□□ 1
LMX1B-204ENST00000561065 TM4SF1P30408 202 aa21.28■■□□□ 1
LMX1B-204ENST00000561065 TGFB2P61812 414 aa21.28■■□□□ 1
LMX1B-204ENST00000561065 BTBD11A6QL63 1104 aa21.27■□□□□ 0.99
LMX1B-204ENST00000561065 DPEP1P16444 411 aa21.27■□□□□ 0.99
LMX1B-204ENST00000561065 EIF5P55010 431 aaKnown RBP21.27■□□□□ 0.99
LMX1B-204ENST00000561065 FMNL2Q96PY5 1086 aa21.27■□□□□ 0.99
LMX1B-204ENST00000561065 PLEKHF1Q96S99 279 aa21.27■□□□□ 0.99
LMX1B-204ENST00000561065 ATP10DQ9P241 1426 aa21.26■□□□□ 0.99
LMX1B-204ENST00000561065 PRAMEF22A3QJZ6 481 aa21.26■□□□□ 0.99
LMX1B-204ENST00000561065 ZPR1O75312 459 aa21.26■□□□□ 0.99
LMX1B-204ENST00000561065 STARD3NLO95772 234 aa21.26■□□□□ 0.99
LMX1B-204ENST00000561065 NFIXQ14938 502 aa21.26■□□□□ 0.99
LMX1B-204ENST00000561065 ANKRD31Q8N7Z5 1873 aa21.25■□□□□ 0.99
LMX1B-204ENST00000561065 KCNA3P22001 575 aa21.25■□□□□ 0.99
LMX1B-204ENST00000561065 DDX10Q13206 875 aaKnown RBP21.25■□□□□ 0.99
LMX1B-204ENST00000561065 RTF1Q92541 710 aaKnown RBP21.24■□□□□ 0.99
LMX1B-204ENST00000561065 CARMIL3Q8ND23 1372 aa21.24■□□□□ 0.99
LMX1B-204ENST00000561065 COL11A2P13942 1736 aaPredicted RBP21.22■□□□□ 0.99
LMX1B-204ENST00000561065 HTATSF1O43719 755 aaKnown RBP21.22■□□□□ 0.99
LMX1B-204ENST00000561065 A1BGP04217 495 aa21.22■□□□□ 0.99
LMX1B-204ENST00000561065 BCS1LQ9Y276 419 aa21.22■□□□□ 0.99
LMX1B-204ENST00000561065 PIP4K2AP48426 406 aaPredicted RBP21.21■□□□□ 0.99
LMX1B-204ENST00000561065 RALBP1Q15311 655 aa21.21■□□□□ 0.99
LMX1B-204ENST00000561065 TEX13AQ9BXU3 409 aaPredicted RBP21.21■□□□□ 0.99
LMX1B-204ENST00000561065 USP16Q9Y5T5 823 aa21.21■□□□□ 0.99
LMX1B-204ENST00000561065 CHRNA5P30532 468 aa21.2■□□□□ 0.98
LMX1B-204ENST00000561065 IL6STP40189 918 aaPredicted RBP21.2■□□□□ 0.98
LMX1B-204ENST00000561065 ZNF330Q9Y3S2 320 aaPredicted RBP21.2■□□□□ 0.98
LMX1B-204ENST00000561065 NFE2L2Q16236 605 aa21.19■□□□□ 0.98
LMX1B-204ENST00000561065 THUMPD2Q9BTF0 503 aaKnown RBP21.19■□□□□ 0.98
LMX1B-204ENST00000561065 TBC1D9BQ66K14 1250 aa21.18■□□□□ 0.98
LMX1B-204ENST00000561065 MIS18AQ9NYP9 233 aa21.18■□□□□ 0.98
LMX1B-204ENST00000561065 TBC1D2BQ9UPU7 963 aa21.18■□□□□ 0.98
LMX1B-204ENST00000561065 A0A087WZG4 1122 aa21.17■□□□□ 0.98
LMX1B-204ENST00000561065 CAMTA2O94983 1202 aa21.17■□□□□ 0.98
LMX1B-204ENST00000561065 SERPINB2P05120 415 aa21.17■□□□□ 0.98
LMX1B-204ENST00000561065 MYBBP1AQ9BQG0 1328 aaKnown RBP21.17■□□□□ 0.98
LMX1B-204ENST00000561065 TAF7Q15545 349 aaPredicted RBP21.16■□□□□ 0.98
LMX1B-204ENST00000561065 BICDL1Q6ZP65 573 aa21.16■□□□□ 0.98
LMX1B-204ENST00000561065 SBF1O95248 1867 aa21.15■□□□□ 0.98
LMX1B-204ENST00000561065 SNRPA1P09661 255 aaKnown RBP21.15■□□□□ 0.98
LMX1B-204ENST00000561065 NBPF26B4DH59 902 aa21.14■□□□□ 0.97
LMX1B-204ENST00000561065 GIGYF1O75420 1035 aaPredicted RBP21.14■□□□□ 0.97
LMX1B-204ENST00000561065 NBPF10Q6P3W6 841 aaKnown RBP21.14■□□□□ 0.97
LMX1B-204ENST00000561065 NBPF15Q8N660 670 aa21.14■□□□□ 0.97
LMX1B-204ENST00000561065 PIM2Q9P1W9 311 aa21.14■□□□□ 0.97
LMX1B-204ENST00000561065 MAPK8IP3Q9UPT6 1336 aa21.14■□□□□ 0.97
LMX1B-204ENST00000561065 CACNA1SQ13698 1873 aa21.14■□□□□ 0.97
LMX1B-204ENST00000561065 NEFMP07197 916 aa21.13■□□□□ 0.97
LMX1B-204ENST00000561065 C1QTNF8P60827 252 aa21.13■□□□□ 0.97
LMX1B-204ENST00000561065 DZIP3Q86Y13 1208 aaKnown RBP21.12■□□□□ 0.97
LMX1B-204ENST00000561065 ZNF526Q8TF50 670 aaPredicted RBP21.12■□□□□ 0.97
LMX1B-204ENST00000561065 DALRD3Q5D0E6 543 aaKnown RBP21.11■□□□□ 0.97
LMX1B-204ENST00000561065 ARHGAP27Q6ZUM4 889 aa21.11■□□□□ 0.97
LMX1B-204ENST00000561065 PRR5LQ6MZQ0 368 aa21.1■□□□□ 0.97
LMX1B-204ENST00000561065 CCDC24Q8N4L8 307 aa21.1■□□□□ 0.97
LMX1B-204ENST00000561065 PNNQ9H307 717 aaKnown RBP21.1■□□□□ 0.97
LMX1B-204ENST00000561065 ARFGEF2Q9Y6D5 1785 aa21.1■□□□□ 0.97
LMX1B-204ENST00000561065 EIF4A1P60842 406 aaKnown RBP21.09■□□□□ 0.97
LMX1B-204ENST00000561065 NUP98P52948 1817 aa21.08■□□□□ 0.97
LMX1B-204ENST00000561065 TIAM2Q8IVF5 1701 aa21.07■□□□□ 0.96
LMX1B-204ENST00000561065 CCDC146Q8IYE0 955 aa21.07■□□□□ 0.96
LMX1B-204ENST00000561065 PNISRQ8TF01 805 aaKnown RBP21.07■□□□□ 0.96
LMX1B-204ENST00000561065 GPBP1L1Q9HC44 474 aaPredicted RBP21.07■□□□□ 0.96
LMX1B-204ENST00000561065 TNRC6CQ9HCJ0 1690 aaKnown RBP21.07■□□□□ 0.96
LMX1B-204ENST00000561065 TMPOP42166 694 aaKnown RBP21.06■□□□□ 0.96
LMX1B-204ENST00000561065 C2CD5Q86YS7 1000 aa21.06■□□□□ 0.96
LMX1B-204ENST00000561065 PRKRIP1Q9H875 184 aaPredicted RBP21.06■□□□□ 0.96
LMX1B-204ENST00000561065 CCDC88AQ3V6T2 1871 aa21.06■□□□□ 0.96
LMX1B-204ENST00000561065 RIPK4P57078 832 aa21.05■□□□□ 0.96
LMX1B-204ENST00000561065 RRP7AQ9Y3A4 280 aaKnown RBP21.05■□□□□ 0.96
LMX1B-204ENST00000561065 FER1L6Q2WGJ9 1857 aa21.05■□□□□ 0.96
LMX1B-204ENST00000561065 SLX4Q8IY92 1834 aa21.05■□□□□ 0.96
LMX1B-204ENST00000561065 RASSF7Q02833 373 aa21.04■□□□□ 0.96
LMX1B-204ENST00000561065 C9orf131Q5VYM1 1079 aa21.04■□□□□ 0.96
LMX1B-204ENST00000561065 NPM2Q86SE8 214 aaKnown RBP21.04■□□□□ 0.96
LMX1B-204ENST00000561065 SETDB2Q96T68 719 aa21.04■□□□□ 0.96
LMX1B-204ENST00000561065 CNBD1Q8NA66 436 aa21.04■□□□□ 0.96
LMX1B-204ENST00000561065 PRELPP51888 382 aa21.03■□□□□ 0.96
LMX1B-204ENST00000561065 HLFQ16534 295 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms