RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 POLRMTO00411 1230 aaKnown RBP13.65□□□□□ -0.22
LDLR-214ENST00000560628 FCHSD2O94868 740 aa13.65□□□□□ -0.22
LDLR-214ENST00000560628 KCNA3P22001 575 aa13.65□□□□□ -0.22
LDLR-214ENST00000560628 ARHGAP27Q6ZUM4 889 aa13.65□□□□□ -0.22
LDLR-214ENST00000560628 MCM10Q7L590 875 aa13.65□□□□□ -0.22
LDLR-214ENST00000560628 NARFQ9UHQ1 456 aa13.65□□□□□ -0.22
LDLR-214ENST00000560628 C10orf71Q711Q0 1435 aa13.64□□□□□ -0.23
LDLR-214ENST00000560628 DCTN1Q14203 1278 aa13.64□□□□□ -0.23
LDLR-214ENST00000560628 NFIXQ14938 502 aa13.64□□□□□ -0.23
LDLR-214ENST00000560628 RTF1Q92541 710 aaKnown RBP13.64□□□□□ -0.23
LDLR-214ENST00000560628 BCL2L12Q9HB09 334 aa13.64□□□□□ -0.23
LDLR-214ENST00000560628 ZNF330Q9Y3S2 320 aaPredicted RBP13.64□□□□□ -0.23
LDLR-214ENST00000560628 ATP10DQ9P241 1426 aa13.64□□□□□ -0.23
LDLR-214ENST00000560628 COL15A1P39059 1388 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 HEG1Q9ULI3 1381 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 A1BGP04217 495 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 CHRNA5P30532 468 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 EIF5P55010 431 aaKnown RBP13.63□□□□□ -0.23
LDLR-214ENST00000560628 BICDL1Q6ZP65 573 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 FMNL2Q96PY5 1086 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 TEX13AQ9BXU3 409 aaPredicted RBP13.63□□□□□ -0.23
LDLR-214ENST00000560628 PIM2Q9P1W9 311 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 C4AP0C0L4 1744 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 ADAMTS7Q9UKP4 1686 aa13.63□□□□□ -0.23
LDLR-214ENST00000560628 CEMIPQ8WUJ3 1361 aa13.62□□□□□ -0.23
LDLR-214ENST00000560628 GPBP1L1Q9HC44 474 aaPredicted RBP13.62□□□□□ -0.23
LDLR-214ENST00000560628 TBC1D2BQ9UPU7 963 aa13.62□□□□□ -0.23
LDLR-214ENST00000560628 N4BP2Q86UW6 1770 aaPredicted RBP13.61□□□□□ -0.23
LDLR-214ENST00000560628 A0A087WZG4 1122 aa13.61□□□□□ -0.23
LDLR-214ENST00000560628 SENP3-EIF4A1A0A087X0R7 540 aa13.61□□□□□ -0.23
LDLR-214ENST00000560628 SERPINB2P05120 415 aa13.61□□□□□ -0.23
LDLR-214ENST00000560628 USP16Q9Y5T5 823 aa13.61□□□□□ -0.23
LDLR-214ENST00000560628 VIRMAQ69YN4 1812 aaKnown RBP13.61□□□□□ -0.23
LDLR-214ENST00000560628 PRAMEF22A3QJZ6 481 aa13.6□□□□□ -0.23
LDLR-214ENST00000560628 PIP4K2AP48426 406 aaPredicted RBP13.6□□□□□ -0.23
LDLR-214ENST00000560628 DALRD3Q5D0E6 543 aaKnown RBP13.6□□□□□ -0.23
LDLR-214ENST00000560628 MIS18AQ9NYP9 233 aa13.6□□□□□ -0.23
LDLR-214ENST00000560628 TBC1D9BQ66K14 1250 aa13.59□□□□□ -0.23
LDLR-214ENST00000560628 NPM2Q86SE8 214 aaKnown RBP13.59□□□□□ -0.23
LDLR-214ENST00000560628 KIF13BQ9NQT8 1826 aa13.59□□□□□ -0.23
LDLR-214ENST00000560628 ADCY9O60503 1353 aa13.58□□□□□ -0.23
LDLR-214ENST00000560628 HTATSF1O43719 755 aaKnown RBP13.58□□□□□ -0.24
LDLR-214ENST00000560628 NEFMP07197 916 aa13.58□□□□□ -0.24
LDLR-214ENST00000560628 IL6STP40189 918 aaPredicted RBP13.58□□□□□ -0.24
LDLR-214ENST00000560628 DDX10Q13206 875 aaKnown RBP13.58□□□□□ -0.24
LDLR-214ENST00000560628 TAF7Q15545 349 aaPredicted RBP13.58□□□□□ -0.24
LDLR-214ENST00000560628 KIAA1551Q9HCM1 1747 aa13.58□□□□□ -0.24
LDLR-214ENST00000560628 SNRPA1P09661 255 aaKnown RBP13.57□□□□□ -0.24
LDLR-214ENST00000560628 CCDC24Q8N4L8 307 aa13.57□□□□□ -0.24
LDLR-214ENST00000560628 PLEKHF1Q96S99 279 aa13.57□□□□□ -0.24
LDLR-214ENST00000560628 UBR2Q8IWV8 1755 aa13.56□□□□□ -0.24
LDLR-214ENST00000560628 C9orf131Q5VYM1 1079 aa13.56□□□□□ -0.24
LDLR-214ENST00000560628 DZIP3Q86Y13 1208 aaKnown RBP13.56□□□□□ -0.24
LDLR-214ENST00000560628 C2CD5Q86YS7 1000 aa13.56□□□□□ -0.24
LDLR-214ENST00000560628 CAMTA2O94983 1202 aa13.55□□□□□ -0.24
LDLR-214ENST00000560628 THUMPD2Q9BTF0 503 aaKnown RBP13.55□□□□□ -0.24
LDLR-214ENST00000560628 SIPA1L3O60292 1781 aaPredicted RBP13.54□□□□□ -0.24
LDLR-214ENST00000560628 H0YIN7 160 aa13.54□□□□□ -0.24
LDLR-214ENST00000560628 NFE2L2Q16236 605 aa13.54□□□□□ -0.24
LDLR-214ENST00000560628 SETDB2Q96T68 719 aa13.54□□□□□ -0.24
LDLR-214ENST00000560628 CARMIL3Q8ND23 1372 aa13.54□□□□□ -0.24
LDLR-214ENST00000560628 NBPF26B4DH59 902 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 KIF3CO14782 793 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 NPHP1O15259 732 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 RALBP1Q15311 655 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 PRR5LQ6MZQ0 368 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 NBPF10Q6P3W6 841 aaKnown RBP13.53□□□□□ -0.24
LDLR-214ENST00000560628 NBPF15Q8N660 670 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 TTLL6Q8N841 843 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 ZNF622Q969S3 477 aaKnown RBP eCLIP13.53□□□□□ -0.248e-9■□□□□ 10.4
LDLR-214ENST00000560628 PNNQ9H307 717 aaKnown RBP13.53□□□□□ -0.24
LDLR-214ENST00000560628 RNF181Q9P0P0 153 aa13.53□□□□□ -0.24
LDLR-214ENST00000560628 NGEFQ8N5V2 710 aa13.52□□□□□ -0.25
LDLR-214ENST00000560628 BRIP1Q9BX63 1249 aa13.52□□□□□ -0.25
LDLR-214ENST00000560628 MAPK8IP3Q9UPT6 1336 aa13.52□□□□□ -0.25
LDLR-214ENST00000560628 PDE6BP35913 854 aa13.51□□□□□ -0.25
LDLR-214ENST00000560628 RASSF7Q02833 373 aa13.51□□□□□ -0.25
LDLR-214ENST00000560628 PNISRQ8TF01 805 aaKnown RBP13.51□□□□□ -0.25
LDLR-214ENST00000560628 NMRK2Q9NPI5 230 aa13.51□□□□□ -0.25
LDLR-214ENST00000560628 ZNF219Q9P2Y4 722 aaPredicted RBP13.51□□□□□ -0.25
LDLR-214ENST00000560628 AFDNP55196 1824 aaKnown RBP13.5□□□□□ -0.25
LDLR-214ENST00000560628 CNBD1Q8NA66 436 aa13.5□□□□□ -0.25
LDLR-214ENST00000560628 BRCA1P38398 1863 aaKnown RBP13.5□□□□□ -0.25
LDLR-214ENST00000560628 FAM177BA6PVY3 158 aa13.49□□□□□ -0.25
LDLR-214ENST00000560628 RIPK4P57078 832 aa13.49□□□□□ -0.25
LDLR-214ENST00000560628 EIF4A1P60842 406 aaKnown RBP13.49□□□□□ -0.25
LDLR-214ENST00000560628 CLEC4GQ6UXB4 293 aa13.49□□□□□ -0.25
LDLR-214ENST00000560628 RRP7AQ9Y3A4 280 aaKnown RBP13.49□□□□□ -0.25
LDLR-214ENST00000560628 NRXN2Q9P2S2 1712 aa13.48□□□□□ -0.25
LDLR-214ENST00000560628 C21orf2O43822 256 aa13.48□□□□□ -0.25
LDLR-214ENST00000560628 PRELPP51888 382 aa13.48□□□□□ -0.25
LDLR-214ENST00000560628 ST5P78524 1137 aa13.48□□□□□ -0.25
LDLR-214ENST00000560628 HLFQ16534 295 aa13.48□□□□□ -0.25
LDLR-214ENST00000560628 NBPF5PQ86XG9 351 aaPredicted RBP13.48□□□□□ -0.25
LDLR-214ENST00000560628 NIP7Q9Y221 180 aaKnown RBP eCLIP13.48□□□□□ -0.25
LDLR-214ENST00000560628 ZNF652Q9Y2D9 606 aa13.48□□□□□ -0.25
LDLR-214ENST00000560628 MYL6BP14649 208 aa13.47□□□□□ -0.25
LDLR-214ENST00000560628 HSPA6P17066 643 aa13.47□□□□□ -0.25
LDLR-214ENST00000560628 TMPOP42166 694 aaKnown RBP13.47□□□□□ -0.25
LDLR-214ENST00000560628 NEUROD2Q15784 382 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms