RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 IL17REQ8NFR9 667 aa18.71■□□□□ 0.59
TPM1-223ENST00000560445 NARFQ9UHQ1 456 aa18.71■□□□□ 0.59
TPM1-223ENST00000560445 BTBD11A6QL63 1104 aa18.7■□□□□ 0.58
TPM1-223ENST00000560445 GIGYF1O75420 1035 aaPredicted RBP18.69■□□□□ 0.58
TPM1-223ENST00000560445 FKBP8Q14318 412 aa18.69■□□□□ 0.58
TPM1-223ENST00000560445 RALBP1Q15311 655 aa18.69■□□□□ 0.58
TPM1-223ENST00000560445 SRP68Q9UHB9 627 aaKnown RBP18.69■□□□□ 0.58
TPM1-223ENST00000560445 USPL1Q5W0Q7 1092 aa18.68■□□□□ 0.58
TPM1-223ENST00000560445 ZNF496Q96IT1 587 aaPredicted RBP18.68■□□□□ 0.58
TPM1-223ENST00000560445 PHACTR3Q96KR7 559 aa18.68■□□□□ 0.58
TPM1-223ENST00000560445 ZBTB1Q9Y2K1 713 aa18.68■□□□□ 0.58
TPM1-223ENST00000560445 POTEDQ86YR6 584 aa18.67■□□□□ 0.58
TPM1-223ENST00000560445 MAPK8IP3Q9UPT6 1336 aa18.67■□□□□ 0.58
TPM1-223ENST00000560445 CANXP27824 592 aaKnown RBP18.66■□□□□ 0.58
TPM1-223ENST00000560445 IL6STP40189 918 aaPredicted RBP18.66■□□□□ 0.58
TPM1-223ENST00000560445 PNISRQ8TF01 805 aaKnown RBP18.66■□□□□ 0.58
TPM1-223ENST00000560445 PIM2Q9P1W9 311 aa18.66■□□□□ 0.58
TPM1-223ENST00000560445 BCS1LQ9Y276 419 aa18.66■□□□□ 0.58
TPM1-223ENST00000560445 N4BP2Q86UW6 1770 aaPredicted RBP18.65■□□□□ 0.58
TPM1-223ENST00000560445 POLRMTO00411 1230 aaKnown RBP18.65■□□□□ 0.58
TPM1-223ENST00000560445 TM4SF1P30408 202 aa18.65■□□□□ 0.58
TPM1-223ENST00000560445 KIAA1551Q9HCM1 1747 aa18.65■□□□□ 0.58
TPM1-223ENST00000560445 ATP10DQ9P241 1426 aa18.65■□□□□ 0.58
TPM1-223ENST00000560445 A0A0G2JLW4 131 aa18.64■□□□□ 0.57
TPM1-223ENST00000560445 DPEP1P16444 411 aa18.64■□□□□ 0.57
TPM1-223ENST00000560445 EIF5P55010 431 aaKnown RBP18.64■□□□□ 0.57
TPM1-223ENST00000560445 DDR1Q08345 913 aa18.64■□□□□ 0.57
TPM1-223ENST00000560445 PDZRN3Q9UPQ7 1066 aa18.64■□□□□ 0.57
TPM1-223ENST00000560445 SNRPA1P09661 255 aaKnown RBP18.63■□□□□ 0.57
TPM1-223ENST00000560445 DALRD3Q5D0E6 543 aaKnown RBP18.63■□□□□ 0.57
TPM1-223ENST00000560445 GPBP1L1Q9HC44 474 aaPredicted RBP18.63■□□□□ 0.57
TPM1-223ENST00000560445 ADCY9O60503 1353 aa18.63■□□□□ 0.57
TPM1-223ENST00000560445 ARFGEF1Q9Y6D6 1849 aa18.63■□□□□ 0.57
TPM1-223ENST00000560445 BRCA1P38398 1863 aaKnown RBP18.63■□□□□ 0.57
TPM1-223ENST00000560445 NFIXQ14938 502 aa18.62■□□□□ 0.57
TPM1-223ENST00000560445 WWC3Q9ULE0 1092 aa18.62■□□□□ 0.57
TPM1-223ENST00000560445 SCN7AQ01118 1682 aa18.62■□□□□ 0.57
TPM1-223ENST00000560445 C1QTNF8P60827 252 aa18.61■□□□□ 0.57
TPM1-223ENST00000560445 TAF7Q15545 349 aaPredicted RBP18.61■□□□□ 0.57
TPM1-223ENST00000560445 MCM10Q7L590 875 aa18.61■□□□□ 0.57
TPM1-223ENST00000560445 ZNF652Q9Y2D9 606 aa18.61■□□□□ 0.57
TPM1-223ENST00000560445 ZNF330Q9Y3S2 320 aaPredicted RBP18.61■□□□□ 0.57
TPM1-223ENST00000560445 CARMIL3Q8ND23 1372 aa18.6■□□□□ 0.57
TPM1-223ENST00000560445 RGL2O15211 777 aa18.6■□□□□ 0.57
TPM1-223ENST00000560445 ARHGAP27Q6ZUM4 889 aa18.6■□□□□ 0.57
TPM1-223ENST00000560445 NRXN2Q9P2S2 1712 aa18.6■□□□□ 0.57
TPM1-223ENST00000560445 NPHP1O15259 732 aa18.59■□□□□ 0.57
TPM1-223ENST00000560445 SERPINB2P05120 415 aa18.59■□□□□ 0.57
TPM1-223ENST00000560445 LMOD3Q0VAK6 560 aa18.59■□□□□ 0.57
TPM1-223ENST00000560445 NFE2L2Q16236 605 aa18.59■□□□□ 0.57
TPM1-223ENST00000560445 MYBBP1AQ9BQG0 1328 aaKnown RBP18.58■□□□□ 0.57
TPM1-223ENST00000560445 AFDNP55196 1824 aaKnown RBP18.58■□□□□ 0.56
TPM1-223ENST00000560445 PDE6BP35913 854 aa18.57■□□□□ 0.56
TPM1-223ENST00000560445 DZIP3Q86Y13 1208 aaKnown RBP18.57■□□□□ 0.56
TPM1-223ENST00000560445 SETDB2Q96T68 719 aa18.57■□□□□ 0.56
TPM1-223ENST00000560445 H0YIN7 160 aa18.56■□□□□ 0.56
TPM1-223ENST00000560445 CLEC4GQ6UXB4 293 aa18.56■□□□□ 0.56
TPM1-223ENST00000560445 BCL2L12Q9HB09 334 aa18.56■□□□□ 0.56
TPM1-223ENST00000560445 LAMB4A4D0S4 1761 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 DLEC1Q9Y238 1755 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 DLG5Q8TDM6 1919 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 A1BGP04217 495 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 KCNA3P22001 575 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 ST5P78524 1137 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 BICDL1Q6ZP65 573 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 PLEKHF1Q96S99 279 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 TBC1D2BQ9UPU7 963 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 BCORQ6W2J9 1755 aa18.55■□□□□ 0.56
TPM1-223ENST00000560445 DDX10Q13206 875 aaKnown RBP18.54■□□□□ 0.56
TPM1-223ENST00000560445 DCTN1Q14203 1278 aa18.54■□□□□ 0.56
TPM1-223ENST00000560445 PIAS4Q8N2W9 510 aaPredicted RBP18.54■□□□□ 0.56
TPM1-223ENST00000560445 TTLL6Q8N841 843 aa18.54■□□□□ 0.56
TPM1-223ENST00000560445 CNBD1Q8NA66 436 aa18.54■□□□□ 0.56
TPM1-223ENST00000560445 BRIP1Q9BX63 1249 aa18.54■□□□□ 0.56
TPM1-223ENST00000560445 ZC3H4Q9UPT8 1303 aaKnown RBP18.53■□□□□ 0.56
TPM1-223ENST00000560445 SENP3-EIF4A1A0A087X0R7 540 aa18.53■□□□□ 0.56
TPM1-223ENST00000560445 KCNQ3O43525 872 aa18.53■□□□□ 0.56
TPM1-223ENST00000560445 CHRNA5P30532 468 aa18.53■□□□□ 0.56
TPM1-223ENST00000560445 WDR43Q15061 677 aaKnown RBP eCLIP18.53■□□□□ 0.56
TPM1-223ENST00000560445 C2CD5Q86YS7 1000 aa18.53■□□□□ 0.56
TPM1-223ENST00000560445 KDM3BQ7LBC6 1761 aa18.53■□□□□ 0.56
TPM1-223ENST00000560445 CAMTA2O94983 1202 aa18.52■□□□□ 0.56
TPM1-223ENST00000560445 TBC1D9BQ66K14 1250 aa18.52■□□□□ 0.56
TPM1-223ENST00000560445 BABAM1Q9NWV8 329 aa18.52■□□□□ 0.56
TPM1-223ENST00000560445 USP16Q9Y5T5 823 aa18.52■□□□□ 0.56
TPM1-223ENST00000560445 ZNF526Q8TF50 670 aaPredicted RBP18.51■□□□□ 0.55
TPM1-223ENST00000560445 ERBB4Q15303 1308 aa18.5■□□□□ 0.55
TPM1-223ENST00000560445 KDM2BQ8NHM5 1336 aa18.5■□□□□ 0.55
TPM1-223ENST00000560445 ZEB1P37275 1124 aaPredicted RBP18.5■□□□□ 0.55
TPM1-223ENST00000560445 SOGA3Q5TF21 947 aa18.49■□□□□ 0.55
TPM1-223ENST00000560445 C9orf131Q5VYM1 1079 aa18.49■□□□□ 0.55
TPM1-223ENST00000560445 PRR5LQ6MZQ0 368 aa18.49■□□□□ 0.55
TPM1-223ENST00000560445 NBPF5PQ86XG9 351 aaPredicted RBP18.49■□□□□ 0.55
TPM1-223ENST00000560445 RIPK4P57078 832 aa18.48■□□□□ 0.55
TPM1-223ENST00000560445 KIF6Q6ZMV9 814 aa18.48■□□□□ 0.55
TPM1-223ENST00000560445 CNKSR1Q969H4 720 aa18.48■□□□□ 0.55
TPM1-223ENST00000560445 RNF181Q9P0P0 153 aa18.48■□□□□ 0.55
TPM1-223ENST00000560445 TPTE2Q6XPS3 522 aa18.47■□□□□ 0.55
TPM1-223ENST00000560445 TSPYL4Q9UJ04 414 aa18.47■□□□□ 0.55
TPM1-223ENST00000560445 LMNB1P20700 586 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms