RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 CABP4P57796 275 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 EVA1CP58658 441 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 TTC22Q5TAA0 569 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 HEG1Q9ULI3 1381 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 COL5A2P05997 1499 aaPredicted RBP17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 PDIA6Q15084 440 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 PPP1R42Q7Z4L9 355 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 TTC5Q8N0Z6 440 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 DCAF5Q96JK2 942 aa17.46■□□□□ 0.39
CARMIL3-203ENST00000560349 ATP8B2P98198 1209 aa17.45■□□□□ 0.38
CARMIL3-203ENST00000560349 CACNA1FO60840 1977 aa17.45■□□□□ 0.38
CARMIL3-203ENST00000560349 OVOS2A0A0G2JMS6 1433 aa17.45■□□□□ 0.38
CARMIL3-203ENST00000560349 SIPA1L3O60292 1781 aaPredicted RBP17.45■□□□□ 0.38
CARMIL3-203ENST00000560349 SRGAP3O43295 1099 aa17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 TBC1D2Q9BYX2 928 aa17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 ZCRB1Q8TBF4 217 aaKnown RBP17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 JARID2Q92833 1246 aaPredicted RBP17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 SCN11AQ9UI33 1791 aa17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 SDSP20132 328 aa17.44■□□□□ 0.38
CARMIL3-203ENST00000560349 PXDNLA1KZ92 1463 aa17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 C5P01031 1676 aa17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 PTCD1O75127 700 aaKnown RBP17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 SURF6O75683 361 aaKnown RBP17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 XAGE3Q8WTP9 111 aa17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 LRRCC1Q9C099 1032 aa17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 BTG4Q9NY30 223 aa17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 C9orf78Q9NZ63 289 aaPredicted RBP17.43■□□□□ 0.38
CARMIL3-203ENST00000560349 KSR2Q6VAB6 950 aa17.42■□□□□ 0.38
CARMIL3-203ENST00000560349 IL27Q8NEV9 243 aa17.42■□□□□ 0.38
CARMIL3-203ENST00000560349 DDX21Q9NR30 783 aaKnown RBP eCLIP17.42■□□□□ 0.38
CARMIL3-203ENST00000560349 CDC45O75419 566 aa17.42■□□□□ 0.38
CARMIL3-203ENST00000560349 COPS6Q7L5N1 327 aa17.42■□□□□ 0.38
CARMIL3-203ENST00000560349 ADAMTS7Q9UKP4 1686 aa17.42■□□□□ 0.38
CARMIL3-203ENST00000560349 IL2RBP14784 551 aa17.41■□□□□ 0.38
CARMIL3-203ENST00000560349 PDE1AP54750 535 aa17.41■□□□□ 0.38
CARMIL3-203ENST00000560349 RIC3Q7Z5B4 369 aa17.41■□□□□ 0.38
CARMIL3-203ENST00000560349 NUTM1Q86Y26 1132 aa17.41■□□□□ 0.38
CARMIL3-203ENST00000560349 HYPKQ9NX55 129 aa17.41■□□□□ 0.38
CARMIL3-203ENST00000560349 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.41■□□□□ 0.38
CARMIL3-203ENST00000560349 BECN1Q14457 450 aa17.4■□□□□ 0.38
CARMIL3-203ENST00000560349 RBM42Q9BTD8 480 aaKnown RBP17.4■□□□□ 0.38
CARMIL3-203ENST00000560349 IBTKQ9P2D0 1353 aaPredicted RBP17.4■□□□□ 0.38
CARMIL3-203ENST00000560349 PA2G4Q9UQ80 394 aaKnown RBP17.4■□□□□ 0.38
CARMIL3-203ENST00000560349 PCDH11XQ9BZA7 1347 aa17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 PCDH11YQ9BZA8 1340 aa17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 ABCA3Q99758 1704 aa17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 SNRPA1P09661 255 aaKnown RBP17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 GSE1Q14687 1217 aa17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 SSH3Q8TE77 659 aa17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 FMNL2Q96PY5 1086 aa17.39■□□□□ 0.37
CARMIL3-203ENST00000560349 MAP4K4O95819 1239 aaPredicted RBP17.38■□□□□ 0.37
CARMIL3-203ENST00000560349 IGKV5-2P06315 115 aa17.38■□□□□ 0.37
CARMIL3-203ENST00000560349 MYD88Q99836 296 aa17.38■□□□□ 0.37
CARMIL3-203ENST00000560349 CARD10Q9BWT7 1032 aa17.38■□□□□ 0.37
CARMIL3-203ENST00000560349 PKD1L3Q7Z443 1732 aa17.38■□□□□ 0.37
CARMIL3-203ENST00000560349 MX1P20591 662 aa17.37■□□□□ 0.37
CARMIL3-203ENST00000560349 ATP5J2-PTCD1G3V325 749 aa17.37■□□□□ 0.37
CARMIL3-203ENST00000560349 HSP90AB1P08238 724 aaKnown RBP17.37■□□□□ 0.37
CARMIL3-203ENST00000560349 SUCLG2Q96I99 432 aa17.37■□□□□ 0.37
CARMIL3-203ENST00000560349 CHMP4AQ9BY43 222 aa17.37■□□□□ 0.37
CARMIL3-203ENST00000560349 KAT6BQ8WYB5 2073 aa17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 RILPL2Q969X0 211 aa17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 N4BP2Q86UW6 1770 aaPredicted RBP17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 TRIM6-TRIM34B2RNG4 842 aa17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 ADAMTS2O95450 1211 aa17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 DDX58O95786 925 aaKnown RBP17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 OS9Q13438 667 aaPredicted RBP17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 UNC5CLQ8IV45 518 aa17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 ZNF330Q9Y3S2 320 aaPredicted RBP17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 ABCC6O95255 1503 aa17.36■□□□□ 0.37
CARMIL3-203ENST00000560349 CD2BP2O95400 341 aaKnown RBP17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 POLA2Q14181 598 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 KLHDC4Q8TBB5 520 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 KIF2CQ99661 725 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 BICC1Q9H694 974 aaKnown RBP17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 FRAT2O75474 233 aaPredicted RBP17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 RBM25P49756 843 aaKnown RBP17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 LINS1Q8NG48 757 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 KAZALD1Q96I82 304 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 NHSL1Q5SYE7 1610 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 SALL3Q9BXA9 1300 aa17.35■□□□□ 0.37
CARMIL3-203ENST00000560349 GRM8O00222 908 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 A1BGP04217 495 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 LRP10Q7Z4F1 713 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 MRC1P22897 1456 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 RHPN1Q8TCX5 695 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 SIL1Q9H173 461 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 PIP4K2BP78356 416 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 ANKRD13DQ6ZTN6 518 aa17.34■□□□□ 0.37
CARMIL3-203ENST00000560349 NBPF26B4DH59 902 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 NBPF14Q5TI25 921 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 NBPF10Q6P3W6 841 aaKnown RBP17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 NBPF15Q8N660 670 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 FOXD4L1Q9NU39 408 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 ROBO1Q9Y6N7 1651 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 NEURL1BA8MQ27 555 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 ALDH1L1O75891 902 aa17.33■□□□□ 0.36
CARMIL3-203ENST00000560349 A0A0G2JS52 829 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms