RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CERKQ8TCT0 537 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 SRCIN1Q9C0H9 1055 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 USP44Q9H0E7 712 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 USP16Q9Y5T5 823 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 SHANK3Q9BYB0 1731 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 SLIT2O94813 1529 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 JCADQ9P266 1359 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 CHD1LQ86WJ1 897 aa15.89■□□□□ 0.13
USP3-213ENST00000559711 C8orf34Q49A92 452 aa15.89■□□□□ 0.13
USP3-213ENST00000559711 LRP10Q7Z4F1 713 aa15.89■□□□□ 0.13
USP3-213ENST00000559711 TNS2Q63HR2 1409 aa15.88■□□□□ 0.13
USP3-213ENST00000559711 SPATA31A5Q5VU36 1347 aa15.88■□□□□ 0.13
USP3-213ENST00000559711 SPATA31A7Q8IWB4 1347 aa15.88■□□□□ 0.13
USP3-213ENST00000559711 DDX58O95786 925 aaKnown RBP15.88■□□□□ 0.13
USP3-213ENST00000559711 ERBB4Q15303 1308 aa15.87■□□□□ 0.13
USP3-213ENST00000559711 HMMRO75330 724 aa15.87■□□□□ 0.13
USP3-213ENST00000559711 TMOD3Q9NYL9 352 aa15.87■□□□□ 0.13
USP3-213ENST00000559711 MAP3K2Q9Y2U5 619 aa15.87■□□□□ 0.13
USP3-213ENST00000559711 PLCH1Q4KWH8 1693 aa15.87■□□□□ 0.13
USP3-213ENST00000559711 ALDH1L1O75891 902 aa15.86■□□□□ 0.13
USP3-213ENST00000559711 ANKRD45Q5TZF3 282 aa15.86■□□□□ 0.13
USP3-213ENST00000559711 UBTFL1P0CB47 393 aaPredicted RBP15.86■□□□□ 0.13
USP3-213ENST00000559711 BARGINQ6ZT62 677 aa15.86■□□□□ 0.13
USP3-213ENST00000559711 PIGBQ92521 554 aa15.86■□□□□ 0.13
USP3-213ENST00000559711 GLI3P10071 1580 aa15.85■□□□□ 0.13
USP3-213ENST00000559711 NRAPQ86VF7 1730 aa15.85■□□□□ 0.13
USP3-213ENST00000559711 IBTKQ9P2D0 1353 aaPredicted RBP15.85■□□□□ 0.13
USP3-213ENST00000559711 KCPQ6ZWJ8 1503 aa15.85■□□□□ 0.13
USP3-213ENST00000559711 ATP8B2P98198 1209 aa15.85■□□□□ 0.13
USP3-213ENST00000559711 UNC5CLQ8IV45 518 aa15.85■□□□□ 0.13
USP3-213ENST00000559711 LNPKQ9C0E8 428 aa15.85■□□□□ 0.13
USP3-213ENST00000559711 N4BP2Q86UW6 1770 aaPredicted RBP15.85■□□□□ 0.13
USP3-213ENST00000559711 C5P01031 1676 aa15.84■□□□□ 0.13
USP3-213ENST00000559711 MYL6BP14649 208 aa15.84■□□□□ 0.13
USP3-213ENST00000559711 COPS6Q7L5N1 327 aa15.84■□□□□ 0.13
USP3-213ENST00000559711 LINS1Q8NG48 757 aa15.84■□□□□ 0.13
USP3-213ENST00000559711 XAGE3Q8WTP9 111 aa15.84■□□□□ 0.13
USP3-213ENST00000559711 LRRFIP2Q9Y608 721 aaKnown RBP15.84■□□□□ 0.13
USP3-213ENST00000559711 SPATA31A6Q5VVP1 1343 aa15.84■□□□□ 0.13
USP3-213ENST00000559711 AIMP1Q12904 312 aaKnown RBP15.83■□□□□ 0.13
USP3-213ENST00000559711 VSIG10Q8N0Z9 540 aa15.83■□□□□ 0.13
USP3-213ENST00000559711 LRP6O75581 1613 aa15.83■□□□□ 0.12
USP3-213ENST00000559711 PAPPAQ13219 1627 aa15.83■□□□□ 0.12
USP3-213ENST00000559711 NWD2Q9ULI1 1742 aa15.83■□□□□ 0.12
USP3-213ENST00000559711 PTCD1O75127 700 aaKnown RBP15.83■□□□□ 0.12
USP3-213ENST00000559711 DDB1Q16531 1140 aa15.83■□□□□ 0.12
USP3-213ENST00000559711 FNBP4Q8N3X1 1017 aaPredicted RBP15.83■□□□□ 0.12
USP3-213ENST00000559711 ATG3Q9NT62 314 aa15.83■□□□□ 0.12
USP3-213ENST00000559711 BCL9O00512 1426 aa15.82■□□□□ 0.12
USP3-213ENST00000559711 TOGARAM1Q9Y4F4 1720 aa15.82■□□□□ 0.12
USP3-213ENST00000559711 NBPF7P0C2Y1 421 aaPredicted RBP15.82■□□□□ 0.12
USP3-213ENST00000559711 ANKRD13DQ6ZTN6 518 aa15.82■□□□□ 0.12
USP3-213ENST00000559711 RIC3Q7Z5B4 369 aa15.82■□□□□ 0.12
USP3-213ENST00000559711 ASAP1Q9ULH1 1129 aa15.82■□□□□ 0.12
USP3-213ENST00000559711 UBR2Q8IWV8 1755 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 NBPF26B4DH59 902 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 VPS72Q15906 364 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 NBPF14Q5TI25 921 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 NBPF10Q6P3W6 841 aaKnown RBP15.81■□□□□ 0.12
USP3-213ENST00000559711 NBPF15Q8N660 670 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 NGLY1Q96IV0 654 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 METTL22Q9BUU2 404 aaPredicted RBP15.81■□□□□ 0.12
USP3-213ENST00000559711 TEX13AQ9BXU3 409 aaPredicted RBP15.81■□□□□ 0.12
USP3-213ENST00000559711 UTYO14607 1347 aa15.81■□□□□ 0.12
USP3-213ENST00000559711 BCL9LQ86UU0 1499 aa15.8■□□□□ 0.12
USP3-213ENST00000559711 PNMA6EA0A0J9YXQ4 647 aa15.8■□□□□ 0.12
USP3-213ENST00000559711 SSH3Q8TE77 659 aa15.8■□□□□ 0.12
USP3-213ENST00000559711 HDAC5Q9UQL6 1122 aa15.8■□□□□ 0.12
USP3-213ENST00000559711 IGKV5-2P06315 115 aa15.79■□□□□ 0.12
USP3-213ENST00000559711 C8orf37Q96NL8 207 aa15.79■□□□□ 0.12
USP3-213ENST00000559711 A1BGP04217 495 aa15.79■□□□□ 0.12
USP3-213ENST00000559711 PIP4K2AP48426 406 aaPredicted RBP15.79■□□□□ 0.12
USP3-213ENST00000559711 NEXNQ0ZGT2 675 aa15.79■□□□□ 0.12
USP3-213ENST00000559711 POLA2Q14181 598 aa15.79■□□□□ 0.12
USP3-213ENST00000559711 CWF19L2Q2TBE0 894 aaKnown RBP15.79■□□□□ 0.12
USP3-213ENST00000559711 MARCH10Q8NA82 808 aaPredicted RBP15.79■□□□□ 0.12
USP3-213ENST00000559711 PLBD2Q8NHP8 589 aa15.79■□□□□ 0.12
USP3-213ENST00000559711 C9orf78Q9NZ63 289 aaPredicted RBP15.79■□□□□ 0.12
USP3-213ENST00000559711 CCDC9Q9Y3X0 531 aaKnown RBP15.79■□□□□ 0.12
USP3-213ENST00000559711 PRIM1P49642 420 aaKnown RBP15.78■□□□□ 0.12
USP3-213ENST00000559711 MTX1Q13505 466 aa15.78■□□□□ 0.12
USP3-213ENST00000559711 WNK3Q9BYP7 1800 aa15.78■□□□□ 0.12
USP3-213ENST00000559711 NEURL1BA8MQ27 555 aa15.77■□□□□ 0.12
USP3-213ENST00000559711 GRM8O00222 908 aa15.77■□□□□ 0.12
USP3-213ENST00000559711 PPP1R42Q7Z4L9 355 aa15.77■□□□□ 0.12
USP3-213ENST00000559711 ZBTB47Q9UFB7 747 aaPredicted RBP15.77■□□□□ 0.12
USP3-213ENST00000559711 LAMB4A4D0S4 1761 aa15.77■□□□□ 0.11
USP3-213ENST00000559711 ANP32AP39687 249 aaKnown RBP15.76■□□□□ 0.11
USP3-213ENST00000559711 BMP2KLQ5H9B9 411 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 PLEKHM2Q8IWE5 1019 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 MYD88Q99836 296 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 STARD3NLO95772 234 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 HSPA1LP34931 641 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 GCKRQ14397 625 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 DNAJC10Q8IXB1 793 aa15.76■□□□□ 0.11
USP3-213ENST00000559711 SLC4A9Q96Q91 983 aa15.75■□□□□ 0.11
USP3-213ENST00000559711 EXOC6BQ9Y2D4 811 aa15.75■□□□□ 0.11
USP3-213ENST00000559711 FAM98CQ17RN3 349 aaKnown RBP15.74■□□□□ 0.11
USP3-213ENST00000559711 TTLL7Q6ZT98 887 aa15.74■□□□□ 0.11
USP3-213ENST00000559711 C16orf71Q8IYS4 520 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms