RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 PER1O15534 1290 aaPredicted RBP17.78■□□□□ 0.44
TPM1-220ENST00000559556 RNMTO43148 476 aaKnown RBP17.78■□□□□ 0.44
TPM1-220ENST00000559556 LGR6Q9HBX8 967 aa17.78■□□□□ 0.44
TPM1-220ENST00000559556 COL15A1P39059 1388 aa17.78■□□□□ 0.44
TPM1-220ENST00000559556 NPC1L1Q9UHC9 1359 aa17.78■□□□□ 0.44
TPM1-220ENST00000559556 FCHSD2O94868 740 aa17.77■□□□□ 0.44
TPM1-220ENST00000559556 HMOX1P09601 288 aa17.77■□□□□ 0.44
TPM1-220ENST00000559556 DNAJC10Q8IXB1 793 aa17.77■□□□□ 0.44
TPM1-220ENST00000559556 LAMB4A4D0S4 1761 aa17.76■□□□□ 0.43
TPM1-220ENST00000559556 POLRMTO00411 1230 aaKnown RBP17.75■□□□□ 0.43
TPM1-220ENST00000559556 DIAPH1O60610 1272 aaKnown RBP17.75■□□□□ 0.43
TPM1-220ENST00000559556 CYP19A1P11511 503 aaPredicted RBP17.75■□□□□ 0.43
TPM1-220ENST00000559556 ARHGAP27Q6ZUM4 889 aa17.75■□□□□ 0.43
TPM1-220ENST00000559556 PIM2Q9P1W9 311 aa17.75■□□□□ 0.43
TPM1-220ENST00000559556 TM4SF1P30408 202 aa17.74■□□□□ 0.43
TPM1-220ENST00000559556 SLC39A6Q13433 755 aa17.74■□□□□ 0.43
TPM1-220ENST00000559556 MTHFSDQ2M296 383 aaKnown RBP17.74■□□□□ 0.43
TPM1-220ENST00000559556 ZPR1O75312 459 aa17.73■□□□□ 0.43
TPM1-220ENST00000559556 VSIG10Q8N0Z9 540 aa17.73■□□□□ 0.43
TPM1-220ENST00000559556 DALRD3Q5D0E6 543 aaKnown RBP17.72■□□□□ 0.43
TPM1-220ENST00000559556 CC2D1BQ5T0F9 858 aaKnown RBP17.72■□□□□ 0.43
TPM1-220ENST00000559556 USPL1Q5W0Q7 1092 aa17.72■□□□□ 0.43
TPM1-220ENST00000559556 NARFQ9UHQ1 456 aa17.72■□□□□ 0.43
TPM1-220ENST00000559556 ZBTB1Q9Y2K1 713 aa17.72■□□□□ 0.43
TPM1-220ENST00000559556 SLX4Q8IY92 1834 aa17.72■□□□□ 0.43
TPM1-220ENST00000559556 NUP98P52948 1817 aa17.71■□□□□ 0.43
TPM1-220ENST00000559556 TOMM70O94826 608 aa17.7■□□□□ 0.42
TPM1-220ENST00000559556 CHRNA5P30532 468 aa17.7■□□□□ 0.42
TPM1-220ENST00000559556 KDM3BQ7LBC6 1761 aa17.69■□□□□ 0.42
TPM1-220ENST00000559556 C9orf131Q5VYM1 1079 aa17.69■□□□□ 0.42
TPM1-220ENST00000559556 NMRK2Q9NPI5 230 aa17.69■□□□□ 0.42
TPM1-220ENST00000559556 NFIXQ14938 502 aa17.68■□□□□ 0.42
TPM1-220ENST00000559556 BCL2L12Q9HB09 334 aa17.68■□□□□ 0.42
TPM1-220ENST00000559556 CARMIL3Q8ND23 1372 aa17.66■□□□□ 0.42
TPM1-220ENST00000559556 CEMIPQ8WUJ3 1361 aa17.66■□□□□ 0.42
TPM1-220ENST00000559556 HEG1Q9ULI3 1381 aa17.66■□□□□ 0.42
TPM1-220ENST00000559556 APLP1P51693 650 aa17.66■□□□□ 0.42
TPM1-220ENST00000559556 TTC5Q8N0Z6 440 aa17.66■□□□□ 0.42
TPM1-220ENST00000559556 GNAT3A8MTJ3 354 aa17.65■□□□□ 0.42
TPM1-220ENST00000559556 EIF5P55010 431 aaKnown RBP17.65■□□□□ 0.42
TPM1-220ENST00000559556 GAS2L2Q8NHY3 880 aa17.65■□□□□ 0.42
TPM1-220ENST00000559556 RNF181Q9P0P0 153 aa17.65■□□□□ 0.42
TPM1-220ENST00000559556 ZC3H4Q9UPT8 1303 aaKnown RBP17.65■□□□□ 0.42
TPM1-220ENST00000559556 U2SURPO15042 1029 aaKnown RBP17.64■□□□□ 0.41
TPM1-220ENST00000559556 STARD3NLO95772 234 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 SERPINB2P05120 415 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 TEFQ10587 303 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 IFFO2Q5TF58 517 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 ZNF790Q6PG37 636 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 IL17REQ8NFR9 667 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 RBM46Q8TBY0 533 aaKnown RBP17.64■□□□□ 0.41
TPM1-220ENST00000559556 ZNF496Q96IT1 587 aaPredicted RBP17.64■□□□□ 0.41
TPM1-220ENST00000559556 KDM2BQ8NHM5 1336 aa17.64■□□□□ 0.41
TPM1-220ENST00000559556 SCN4AP35499 1836 aa17.63■□□□□ 0.41
TPM1-220ENST00000559556 CANXP27824 592 aaKnown RBP17.63■□□□□ 0.41
TPM1-220ENST00000559556 A0A087WZG4 1122 aa17.62■□□□□ 0.41
TPM1-220ENST00000559556 TEX13AQ9BXU3 409 aaPredicted RBP17.62■□□□□ 0.41
TPM1-220ENST00000559556 RASSF7Q02833 373 aa17.61■□□□□ 0.41
TPM1-220ENST00000559556 C16orf71Q8IYS4 520 aaPredicted RBP17.6■□□□□ 0.41
TPM1-220ENST00000559556 TTLL6Q8N841 843 aa17.6■□□□□ 0.41
TPM1-220ENST00000559556 RSPH6AQ9H0K4 717 aa17.6■□□□□ 0.41
TPM1-220ENST00000559556 IL6STP40189 918 aaPredicted RBP17.59■□□□□ 0.41
TPM1-220ENST00000559556 FSTL1Q12841 308 aa17.59■□□□□ 0.41
TPM1-220ENST00000559556 C2CD5Q86YS7 1000 aa17.59■□□□□ 0.41
TPM1-220ENST00000559556 DNAJC5GQ8N7S2 189 aa17.59■□□□□ 0.41
TPM1-220ENST00000559556 FMNL2Q96PY5 1086 aa17.59■□□□□ 0.41
TPM1-220ENST00000559556 H0YIN7 160 aa17.58■□□□□ 0.4
TPM1-220ENST00000559556 LMNB1P20700 586 aa17.58■□□□□ 0.4
TPM1-220ENST00000559556 CNGB1Q14028 1251 aaPredicted RBP17.58■□□□□ 0.4
TPM1-220ENST00000559556 TBC1D9BQ66K14 1250 aa17.58■□□□□ 0.4
TPM1-220ENST00000559556 PRKAR2BP31323 418 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 PRELPP51888 382 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 BICDL1Q6ZP65 573 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 PHACTR3Q96KR7 559 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 CFAP53Q96M91 514 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 PDZRN3Q9UPQ7 1066 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 ANKRD36CQ5JPF3 1778 aa17.57■□□□□ 0.4
TPM1-220ENST00000559556 NFKBIEO00221 500 aa17.56■□□□□ 0.4
TPM1-220ENST00000559556 PRR5LQ6MZQ0 368 aa17.56■□□□□ 0.4
TPM1-220ENST00000559556 RRAGCQ9HB90 399 aa17.56■□□□□ 0.4
TPM1-220ENST00000559556 BTBD11A6QL63 1104 aa17.55■□□□□ 0.4
TPM1-220ENST00000559556 BRIP1Q9BX63 1249 aa17.55■□□□□ 0.4
TPM1-220ENST00000559556 TBC1D2BQ9UPU7 963 aa17.55■□□□□ 0.4
TPM1-220ENST00000559556 ZNF330Q9Y3S2 320 aaPredicted RBP17.55■□□□□ 0.4
TPM1-220ENST00000559556 CAMTA2O94983 1202 aa17.54■□□□□ 0.4
TPM1-220ENST00000559556 A1BGP04217 495 aa17.54■□□□□ 0.4
TPM1-220ENST00000559556 PDE6BP35913 854 aa17.54■□□□□ 0.4
TPM1-220ENST00000559556 LAMB2P55268 1798 aa17.53■□□□□ 0.4
TPM1-220ENST00000559556 GLTPD2A6NH11 291 aa17.53■□□□□ 0.4
TPM1-220ENST00000559556 KCNQ3O43525 872 aa17.53■□□□□ 0.4
TPM1-220ENST00000559556 PPP2R1AP30153 589 aa17.52■□□□□ 0.4
TPM1-220ENST00000559556 CNBD1Q8NA66 436 aa17.52■□□□□ 0.4
TPM1-220ENST00000559556 SMC1BQ8NDV3 1235 aa17.52■□□□□ 0.4
TPM1-220ENST00000559556 NUDCQ9Y266 331 aa17.52■□□□□ 0.4
TPM1-220ENST00000559556 LTBP3Q9NS15 1303 aa17.51■□□□□ 0.39
TPM1-220ENST00000559556 NPM2Q86SE8 214 aaKnown RBP17.51■□□□□ 0.39
TPM1-220ENST00000559556 DZIP3Q86Y13 1208 aaKnown RBP17.51■□□□□ 0.39
TPM1-220ENST00000559556 SETDB2Q96T68 719 aa17.51■□□□□ 0.39
TPM1-220ENST00000559556 VEGFAP15692 232 aaPredicted RBP17.5■□□□□ 0.39
TPM1-220ENST00000559556 ZNF622Q969S3 477 aaKnown RBP eCLIP17.5■□□□□ 0.396e-7■■□□□ 13.8
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms