RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PHF8Q9UPP1 1060 aa15.7■□□□□ 0.1
LDLR-207ENST00000558013 RHPN1Q8TCX5 695 aa15.7■□□□□ 0.1
LDLR-207ENST00000558013 ARHGAP23Q9P227 1491 aa15.69■□□□□ 0.1
LDLR-207ENST00000558013 XRN1Q8IZH2 1706 aaKnown RBP15.69■□□□□ 0.1
LDLR-207ENST00000558013 SYCE3A1L190 88 aa15.69■□□□□ 0.1
LDLR-207ENST00000558013 CPA1P15085 419 aa15.69■□□□□ 0.1
LDLR-207ENST00000558013 PROSER3Q2NL68 480 aa15.69■□□□□ 0.1
LDLR-207ENST00000558013 ESCO1Q5FWF5 840 aa15.68■□□□□ 0.1
LDLR-207ENST00000558013 PI4K2BQ8TCG2 481 aa15.68■□□□□ 0.1
LDLR-207ENST00000558013 SPG7Q9UQ90 795 aa15.68■□□□□ 0.1
LDLR-207ENST00000558013 SLIT1O75093 1534 aa15.68■□□□□ 0.1
LDLR-207ENST00000558013 FAM208AQ9UK61 1670 aaKnown RBP15.68■□□□□ 0.1
LDLR-207ENST00000558013 ZNF445P59923 1031 aa15.68■□□□□ 0.1
LDLR-207ENST00000558013 BEND3Q5T5X7 828 aa15.68■□□□□ 0.1
LDLR-207ENST00000558013 LMOD2Q6P5Q4 547 aa15.67■□□□□ 0.1
LDLR-207ENST00000558013 RASEFQ8IZ41 740 aa15.67■□□□□ 0.1
LDLR-207ENST00000558013 CWC27Q6UX04 472 aaKnown RBP15.67■□□□□ 0.1
LDLR-207ENST00000558013 IP6K1Q92551 441 aa15.67■□□□□ 0.1
LDLR-207ENST00000558013 PA2G4Q9UQ80 394 aaKnown RBP15.67■□□□□ 0.1
LDLR-207ENST00000558013 POLA2Q14181 598 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 ZNF530Q6P9A1 599 aaPredicted RBP15.66■□□□□ 0.1
LDLR-207ENST00000558013 DDX54Q8TDD1 881 aaKnown RBP15.66■□□□□ 0.1
LDLR-207ENST00000558013 DNAAF4Q8WXU2 420 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 LRRC37A3O60309 1634 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 BTBD11A6QL63 1104 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 BRD1O95696 1058 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 MCCP23508 829 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 PSME1Q06323 249 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 CUL4AQ13619 759 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 RNF214Q8ND24 703 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.66■□□□□ 0.1
LDLR-207ENST00000558013 MARF1Q9Y4F3 1742 aaKnown RBP15.66■□□□□ 0.1
LDLR-207ENST00000558013 CEMIPQ8WUJ3 1361 aa15.66■□□□□ 0.1
LDLR-207ENST00000558013 GADD45BO75293 160 aaPredicted RBP15.65■□□□□ 0.1
LDLR-207ENST00000558013 CWF19L2Q2TBE0 894 aaKnown RBP15.65■□□□□ 0.1
LDLR-207ENST00000558013 PPP1R9BQ96SB3 815 aa15.65■□□□□ 0.1
LDLR-207ENST00000558013 TEFQ10587 303 aa15.65■□□□□ 0.1
LDLR-207ENST00000558013 CCDC173Q0VFZ6 552 aa15.64■□□□□ 0.09
LDLR-207ENST00000558013 ORAI2Q96SN7 254 aa15.64■□□□□ 0.09
LDLR-207ENST00000558013 HSPA4P34932 840 aa15.64■□□□□ 0.09
LDLR-207ENST00000558013 ADCY9O60503 1353 aa15.64■□□□□ 0.09
LDLR-207ENST00000558013 OS9Q13438 667 aaPredicted RBP15.63■□□□□ 0.09
LDLR-207ENST00000558013 SNX14Q9Y5W7 946 aa15.63■□□□□ 0.09
LDLR-207ENST00000558013 SGSM2O43147 1006 aa15.63■□□□□ 0.09
LDLR-207ENST00000558013 ANAPC15P60006 121 aa15.63■□□□□ 0.09
LDLR-207ENST00000558013 COL9A3Q14050 684 aaPredicted RBP15.63■□□□□ 0.09
LDLR-207ENST00000558013 KIF1BPQ96EK5 621 aa15.63■□□□□ 0.09
LDLR-207ENST00000558013 MAP3K2Q9Y2U5 619 aa15.63■□□□□ 0.09
LDLR-207ENST00000558013 TUBGCP6Q96RT7 1819 aa15.63■□□□□ 0.09
LDLR-207ENST00000558013 ANKARQ7Z5J8 1434 aa15.62■□□□□ 0.09
LDLR-207ENST00000558013 AXIN2Q9Y2T1 843 aa15.62■□□□□ 0.09
LDLR-207ENST00000558013 AIMP1Q12904 312 aaKnown RBP15.61■□□□□ 0.09
LDLR-207ENST00000558013 ANP32BQ92688 251 aaKnown RBP15.61■□□□□ 0.09
LDLR-207ENST00000558013 LSG1Q9H089 658 aaKnown RBP15.61■□□□□ 0.09
LDLR-207ENST00000558013 RAB11FIP3O75154 756 aa15.61■□□□□ 0.09
LDLR-207ENST00000558013 BABAM1Q9NWV8 329 aa15.61■□□□□ 0.09
LDLR-207ENST00000558013 MCM2P49736 904 aa15.61■□□□□ 0.09
LDLR-207ENST00000558013 PTH1RQ03431 593 aa15.61■□□□□ 0.09
LDLR-207ENST00000558013 LARGE1O95461 756 aa15.6■□□□□ 0.09
LDLR-207ENST00000558013 AK2P54819 239 aa15.6■□□□□ 0.09
LDLR-207ENST00000558013 PXDNQ92626 1479 aa15.6■□□□□ 0.09
LDLR-207ENST00000558013 RUFY3Q7L099 469 aa15.6■□□□□ 0.09
LDLR-207ENST00000558013 C9orf78Q9NZ63 289 aaPredicted RBP15.6■□□□□ 0.09
LDLR-207ENST00000558013 RAD50Q92878 1312 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 GCP02774 474 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 ADCK5Q3MIX3 580 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 LRSAM1Q6UWE0 723 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 USP48Q86UV5 1035 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 MPNDQ8N594 471 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 KLHDC4Q8TBB5 520 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 INTS4Q96HW7 963 aaKnown RBP15.59■□□□□ 0.09
LDLR-207ENST00000558013 RNMTO43148 476 aaKnown RBP15.59■□□□□ 0.09
LDLR-207ENST00000558013 AKAP4Q5JQC9 854 aa15.59■□□□□ 0.09
LDLR-207ENST00000558013 RGPD2P0DJD1 1756 aa15.58■□□□□ 0.09
LDLR-207ENST00000558013 GIGYF1O75420 1035 aaPredicted RBP15.58■□□□□ 0.08
LDLR-207ENST00000558013 SLC39A6Q13433 755 aa15.58■□□□□ 0.08
LDLR-207ENST00000558013 ZSCAN30Q86W11 494 aa15.58■□□□□ 0.08
LDLR-207ENST00000558013 CNTROBQ8N137 903 aa15.58■□□□□ 0.08
LDLR-207ENST00000558013 JARID2Q92833 1246 aaPredicted RBP15.58■□□□□ 0.08
LDLR-207ENST00000558013 PXDNLA1KZ92 1463 aa15.58■□□□□ 0.08
LDLR-207ENST00000558013 AOX1Q06278 1338 aa15.58■□□□□ 0.08
LDLR-207ENST00000558013 CASTP20810 708 aaKnown RBP15.58■□□□□ 0.08
LDLR-207ENST00000558013 PIP4K2AP48426 406 aaPredicted RBP15.58■□□□□ 0.08
LDLR-207ENST00000558013 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.58■□□□□ 0.08
LDLR-207ENST00000558013 LTN1O94822 1766 aa15.57■□□□□ 0.08
LDLR-207ENST00000558013 TTC14Q96N46 770 aa15.57■□□□□ 0.08
LDLR-207ENST00000558013 SIL1Q9H173 461 aa15.57■□□□□ 0.08
LDLR-207ENST00000558013 DBF4Q9UBU7 674 aaPredicted RBP15.57■□□□□ 0.08
LDLR-207ENST00000558013 CNPY2Q9Y2B0 182 aa15.57■□□□□ 0.08
LDLR-207ENST00000558013 PLEKHO1Q53GL0 409 aaPredicted RBP15.57■□□□□ 0.08
LDLR-207ENST00000558013 KAZALD1Q96I82 304 aa15.57■□□□□ 0.08
LDLR-207ENST00000558013 RPAP1Q9BWH6 1393 aaPredicted RBP15.57■□□□□ 0.08
LDLR-207ENST00000558013 PRPF40BQ6NWY9 871 aaKnown RBP15.57■□□□□ 0.08
LDLR-207ENST00000558013 CCDC8Q9H0W5 538 aaPredicted RBP15.57■□□□□ 0.08
LDLR-207ENST00000558013 TLR7Q9NYK1 1049 aaKnown RBP15.57■□□□□ 0.08
LDLR-207ENST00000558013 C1orf141Q5JVX7 400 aa15.56■□□□□ 0.08
LDLR-207ENST00000558013 KIAA1211Q6ZU35 1233 aa15.56■□□□□ 0.08
LDLR-207ENST00000558013 ANKRD24Q8TF21 1146 aa15.56■□□□□ 0.08
LDLR-207ENST00000558013 NFAT5O94916 1531 aa15.56■□□□□ 0.08
LDLR-207ENST00000558013 CLASRPQ8N2M8 674 aaKnown RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms