RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 YBX3P16989 372 aaKnown RBP eCLIP22.17■■□□□ 1.14
NEDD4-212ENST00000557845 FKBP8Q14318 412 aa22.17■■□□□ 1.14
NEDD4-212ENST00000557845 PARP3Q9Y6F1 533 aa22.17■■□□□ 1.14
NEDD4-212ENST00000557845 DLG5Q8TDM6 1919 aa22.17■■□□□ 1.14
NEDD4-212ENST00000557845 UTRNP46939 3433 aa22.17■■□□□ 1.14
NEDD4-212ENST00000557845 MYBBP1AQ9BQG0 1328 aaKnown RBP22.16■■□□□ 1.14
NEDD4-212ENST00000557845 CANXP27824 592 aaKnown RBP22.16■■□□□ 1.14
NEDD4-212ENST00000557845 USPL1Q5W0Q7 1092 aa22.16■■□□□ 1.14
NEDD4-212ENST00000557845 GRIN3BO60391 1043 aa22.15■■□□□ 1.14
NEDD4-212ENST00000557845 NARFQ9UHQ1 456 aa22.15■■□□□ 1.14
NEDD4-212ENST00000557845 TAF7Q15545 349 aaPredicted RBP22.14■■□□□ 1.13
NEDD4-212ENST00000557845 KIF13BQ9NQT8 1826 aa22.14■■□□□ 1.13
NEDD4-212ENST00000557845 COL15A1P39059 1388 aa22.13■■□□□ 1.13
NEDD4-212ENST00000557845 TM4SF1P30408 202 aa22.13■■□□□ 1.13
NEDD4-212ENST00000557845 EIF5P55010 431 aaKnown RBP22.13■■□□□ 1.13
NEDD4-212ENST00000557845 NFE2L2Q16236 605 aa22.13■■□□□ 1.13
NEDD4-212ENST00000557845 TGFB2P61812 414 aa22.12■■□□□ 1.13
NEDD4-212ENST00000557845 MAPK8IP3Q9UPT6 1336 aa22.11■■□□□ 1.13
NEDD4-212ENST00000557845 USP16Q9Y5T5 823 aa22.11■■□□□ 1.13
NEDD4-212ENST00000557845 GOLGB1Q14789 3259 aaKnown RBP22.1■■□□□ 1.13
NEDD4-212ENST00000557845 A1BGP04217 495 aa22.1■■□□□ 1.13
NEDD4-212ENST00000557845 DDR1Q08345 913 aa22.1■■□□□ 1.13
NEDD4-212ENST00000557845 WWC3Q9ULE0 1092 aa22.1■■□□□ 1.13
NEDD4-212ENST00000557845 C10orf71Q711Q0 1435 aa22.09■■□□□ 1.13
NEDD4-212ENST00000557845 A0A087WZG4 1122 aa22.09■■□□□ 1.13
NEDD4-212ENST00000557845 SNRPA1P09661 255 aaKnown RBP22.09■■□□□ 1.13
NEDD4-212ENST00000557845 PRKRIP1Q9H875 184 aaPredicted RBP22.09■■□□□ 1.13
NEDD4-212ENST00000557845 BCL2L12Q9HB09 334 aa22.09■■□□□ 1.13
NEDD4-212ENST00000557845 MIS18AQ9NYP9 233 aa22.09■■□□□ 1.13
NEDD4-212ENST00000557845 N4BP2Q86UW6 1770 aaPredicted RBP22.09■■□□□ 1.13
NEDD4-212ENST00000557845 A0A0G2JLW4 131 aa22.08■■□□□ 1.13
NEDD4-212ENST00000557845 PRAMEF22A3QJZ6 481 aa22.08■■□□□ 1.13
NEDD4-212ENST00000557845 POLRMTO00411 1230 aaKnown RBP22.08■■□□□ 1.13
NEDD4-212ENST00000557845 IL6STP40189 918 aaPredicted RBP22.08■■□□□ 1.13
NEDD4-212ENST00000557845 KIAA1551Q9HCM1 1747 aa22.07■■□□□ 1.12
NEDD4-212ENST00000557845 NFIXQ14938 502 aa22.07■■□□□ 1.12
NEDD4-212ENST00000557845 PNISRQ8TF01 805 aaKnown RBP22.07■■□□□ 1.12
NEDD4-212ENST00000557845 PXDNLA1KZ92 1463 aa22.07■■□□□ 1.12
NEDD4-212ENST00000557845 ZNF784Q8NCA9 323 aaPredicted RBP22.06■■□□□ 1.12
NEDD4-212ENST00000557845 THUMPD2Q9BTF0 503 aaKnown RBP22.06■■□□□ 1.12
NEDD4-212ENST00000557845 ZNF330Q9Y3S2 320 aaPredicted RBP22.06■■□□□ 1.12
NEDD4-212ENST00000557845 DPEP1P16444 411 aa22.05■■□□□ 1.12
NEDD4-212ENST00000557845 RIPK4P57078 832 aa22.05■■□□□ 1.12
NEDD4-212ENST00000557845 NPM2Q86SE8 214 aaKnown RBP22.05■■□□□ 1.12
NEDD4-212ENST00000557845 TBC1D2BQ9UPU7 963 aa22.05■■□□□ 1.12
NEDD4-212ENST00000557845 KCNA3P22001 575 aa22.03■■□□□ 1.12
NEDD4-212ENST00000557845 TMPOP42166 694 aaKnown RBP22.03■■□□□ 1.12
NEDD4-212ENST00000557845 WDR43Q15061 677 aaKnown RBP eCLIP22.03■■□□□ 1.12
NEDD4-212ENST00000557845 AFDNP55196 1824 aaKnown RBP22.03■■□□□ 1.12
NEDD4-212ENST00000557845 SERPINB2P05120 415 aa22.02■■□□□ 1.12
NEDD4-212ENST00000557845 PIP4K2AP48426 406 aaPredicted RBP22.02■■□□□ 1.12
NEDD4-212ENST00000557845 ADAMTS8Q9UP79 889 aa22.02■■□□□ 1.12
NEDD4-212ENST00000557845 KDM3BQ7LBC6 1761 aa22.02■■□□□ 1.11
NEDD4-212ENST00000557845 BICDL1Q6ZP65 573 aa22.01■■□□□ 1.11
NEDD4-212ENST00000557845 CCDC146Q8IYE0 955 aa22.01■■□□□ 1.11
NEDD4-212ENST00000557845 BCS1LQ9Y276 419 aa22.01■■□□□ 1.11
NEDD4-212ENST00000557845 EIF4A1P60842 406 aaKnown RBP22■■□□□ 1.11
NEDD4-212ENST00000557845 TBC1D9BQ66K14 1250 aa22■■□□□ 1.11
NEDD4-212ENST00000557845 RUNDC1Q96C34 613 aa22■■□□□ 1.11
NEDD4-212ENST00000557845 BRCA1P38398 1863 aaKnown RBP22■■□□□ 1.11
NEDD4-212ENST00000557845 NRXN2Q9P2S2 1712 aa22■■□□□ 1.11
NEDD4-212ENST00000557845 GIGYF1O75420 1035 aaPredicted RBP21.99■■□□□ 1.11
NEDD4-212ENST00000557845 CAMTA2O94983 1202 aa21.99■■□□□ 1.11
NEDD4-212ENST00000557845 DZIP3Q86Y13 1208 aaKnown RBP21.99■■□□□ 1.11
NEDD4-212ENST00000557845 PIM2Q9P1W9 311 aa21.99■■□□□ 1.11
NEDD4-212ENST00000557845 NBPF26B4DH59 902 aa21.98■■□□□ 1.11
NEDD4-212ENST00000557845 LMOD3Q0VAK6 560 aa21.98■■□□□ 1.11
NEDD4-212ENST00000557845 NEUROD2Q15784 382 aa21.98■■□□□ 1.11
NEDD4-212ENST00000557845 NBPF10Q6P3W6 841 aaKnown RBP21.98■■□□□ 1.11
NEDD4-212ENST00000557845 NBPF15Q8N660 670 aa21.98■■□□□ 1.11
NEDD4-212ENST00000557845 RRP7AQ9Y3A4 280 aaKnown RBP21.98■■□□□ 1.11
NEDD4-212ENST00000557845 CHRNA5P30532 468 aa21.97■■□□□ 1.11
NEDD4-212ENST00000557845 SCN7AQ01118 1682 aa21.97■■□□□ 1.11
NEDD4-212ENST00000557845 ZNF316A6NFI3 1004 aaPredicted RBP21.96■■□□□ 1.11
NEDD4-212ENST00000557845 LAMB4A4D0S4 1761 aa21.95■■□□□ 1.1
NEDD4-212ENST00000557845 BABAM1Q9NWV8 329 aa21.95■■□□□ 1.1
NEDD4-212ENST00000557845 TSPYL4Q9UJ04 414 aa21.95■■□□□ 1.1
NEDD4-212ENST00000557845 CLEC4GQ6UXB4 293 aa21.94■■□□□ 1.1
NEDD4-212ENST00000557845 SETDB2Q96T68 719 aa21.94■■□□□ 1.1
NEDD4-212ENST00000557845 BCORQ6W2J9 1755 aa21.94■■□□□ 1.1
NEDD4-212ENST00000557845 DALRD3Q5D0E6 543 aaKnown RBP21.93■■□□□ 1.1
NEDD4-212ENST00000557845 ARHGAP27Q6ZUM4 889 aa21.93■■□□□ 1.1
NEDD4-212ENST00000557845 TRIM35Q9UPQ4 493 aa21.93■■□□□ 1.1
NEDD4-212ENST00000557845 ARFGEF1Q9Y6D6 1849 aa21.93■■□□□ 1.1
NEDD4-212ENST00000557845 CARMIL3Q8ND23 1372 aa21.92■■□□□ 1.1
NEDD4-212ENST00000557845 ZNF652Q9Y2D9 606 aa21.91■■□□□ 1.1
NEDD4-212ENST00000557845 PRR5LQ6MZQ0 368 aa21.9■■□□□ 1.1
NEDD4-212ENST00000557845 NGEFQ8N5V2 710 aa21.9■■□□□ 1.1
NEDD4-212ENST00000557845 H0YIN7 160 aa21.89■■□□□ 1.09
NEDD4-212ENST00000557845 RGL2O15211 777 aa21.89■■□□□ 1.09
NEDD4-212ENST00000557845 C2CD5Q86YS7 1000 aa21.89■■□□□ 1.09
NEDD4-212ENST00000557845 CCDC24Q8N4L8 307 aa21.89■■□□□ 1.09
NEDD4-212ENST00000557845 BRIP1Q9BX63 1249 aa21.89■■□□□ 1.09
NEDD4-212ENST00000557845 CHL1O00533 1208 aa21.88■■□□□ 1.09
NEDD4-212ENST00000557845 ANKRD31Q8N7Z5 1873 aa21.88■■□□□ 1.09
NEDD4-212ENST00000557845 ADCY9O60503 1353 aa21.87■■□□□ 1.09
NEDD4-212ENST00000557845 DLEC1Q9Y238 1755 aa21.87■■□□□ 1.09
NEDD4-212ENST00000557845 MYL6BP14649 208 aa21.87■■□□□ 1.09
NEDD4-212ENST00000557845 PDE6BP35913 854 aa21.87■■□□□ 1.09
NEDD4-212ENST00000557845 HLFQ16534 295 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms