RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 USP42Q9H9J4 1324 aaKnown RBP13.48□□□□□ -0.25
NEDD1-211ENST00000557454 DGKZQ13574 1117 aa13.48□□□□□ -0.25
NEDD1-211ENST00000557454 RRS1Q15050 365 aaKnown RBP13.48□□□□□ -0.25
NEDD1-211ENST00000557454 EAPPQ56P03 285 aaPredicted RBP13.48□□□□□ -0.25
NEDD1-211ENST00000557454 SLC12A5Q9H2X9 1139 aa13.48□□□□□ -0.25
NEDD1-211ENST00000557454 LTBP1Q14766 1721 aa13.47□□□□□ -0.25
NEDD1-211ENST00000557454 IQCA1LA6NCM1 817 aa13.47□□□□□ -0.25
NEDD1-211ENST00000557454 GRM1Q13255 1194 aa13.47□□□□□ -0.25
NEDD1-211ENST00000557454 PAXIP1Q6ZW49 1069 aaPredicted RBP13.47□□□□□ -0.25
NEDD1-211ENST00000557454 COG3Q96JB2 828 aa13.47□□□□□ -0.25
NEDD1-211ENST00000557454 RBM42Q9BTD8 480 aaKnown RBP13.47□□□□□ -0.25
NEDD1-211ENST00000557454 CCDC88AQ3V6T2 1871 aa13.46□□□□□ -0.25
NEDD1-211ENST00000557454 CAPNS2Q96L46 248 aa13.46□□□□□ -0.25
NEDD1-211ENST00000557454 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
NEDD1-211ENST00000557454 GPR101Q96P66 508 aaPredicted RBP13.45□□□□□ -0.26
NEDD1-211ENST00000557454 CLEC11AQ9Y240 323 aa13.45□□□□□ -0.26
NEDD1-211ENST00000557454 COL5A3P25940 1745 aaPredicted RBP13.44□□□□□ -0.26
NEDD1-211ENST00000557454 TM4SF1P30408 202 aa13.44□□□□□ -0.26
NEDD1-211ENST00000557454 MAP1SQ66K74 1059 aaPredicted RBP13.44□□□□□ -0.26
NEDD1-211ENST00000557454 CYP4F22Q6NT55 531 aa13.44□□□□□ -0.26
NEDD1-211ENST00000557454 L3MBTL3Q96JM7 780 aaPredicted RBP13.44□□□□□ -0.26
NEDD1-211ENST00000557454 TERF2IPQ9NYB0 399 aa13.44□□□□□ -0.26
NEDD1-211ENST00000557454 HSP90AB2PQ58FF8 381 aa13.43□□□□□ -0.26
NEDD1-211ENST00000557454 C2CD5Q86YS7 1000 aa13.43□□□□□ -0.26
NEDD1-211ENST00000557454 CNTROBQ8N137 903 aa13.43□□□□□ -0.26
NEDD1-211ENST00000557454 DLEC1Q9Y238 1755 aa13.43□□□□□ -0.26
NEDD1-211ENST00000557454 C21orf2O43822 256 aa13.42□□□□□ -0.26
NEDD1-211ENST00000557454 AOC2O75106 756 aa13.42□□□□□ -0.26
NEDD1-211ENST00000557454 ECE1P42892 770 aa13.42□□□□□ -0.26
NEDD1-211ENST00000557454 SPG7Q9UQ90 795 aa13.42□□□□□ -0.26
NEDD1-211ENST00000557454 CARMIL3Q8ND23 1372 aa13.42□□□□□ -0.26
NEDD1-211ENST00000557454 MYH14Q7Z406 1995 aaKnown RBP13.41□□□□□ -0.26
NEDD1-211ENST00000557454 CRKLP46109 303 aaKnown RBP13.41□□□□□ -0.26
NEDD1-211ENST00000557454 TAOK3Q9H2K8 898 aa13.41□□□□□ -0.26
NEDD1-211ENST00000557454 INSRP06213 1382 aa13.41□□□□□ -0.26
NEDD1-211ENST00000557454 ZNF831Q5JPB2 1677 aa13.4□□□□□ -0.26
NEDD1-211ENST00000557454 ADAMTSL1Q8N6G6 1762 aa13.4□□□□□ -0.26
NEDD1-211ENST00000557454 CASP8AP2Q9UKL3 1982 aa13.4□□□□□ -0.26
NEDD1-211ENST00000557454 DDX21Q9NR30 783 aaKnown RBP eCLIP13.4□□□□□ -0.26
NEDD1-211ENST00000557454 DICER1Q9UPY3 1922 aaKnown RBP13.4□□□□□ -0.26
NEDD1-211ENST00000557454 H0YIN7 160 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 CA12O43570 354 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 PHKG2P15735 406 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 EPHX2P34913 555 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 FMR1Q06787 632 aaKnown RBP eCLIP13.39□□□□□ -0.27
NEDD1-211ENST00000557454 NFIXQ14938 502 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 USPL1Q5W0Q7 1092 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 HACL1Q9UJ83 578 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 ROCK2O75116 1388 aaKnown RBP13.39□□□□□ -0.27
NEDD1-211ENST00000557454 SCN4AP35499 1836 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 LTBP3Q9NS15 1303 aa13.39□□□□□ -0.27
NEDD1-211ENST00000557454 ZNF541Q9H0D2 1346 aa13.38□□□□□ -0.27
NEDD1-211ENST00000557454 FLT4P35916 1363 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 ZPR1O75312 459 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 SERPINB2P05120 415 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 MAP2K2P36507 400 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 HABP4Q5JVS0 413 aaKnown RBP13.37□□□□□ -0.27
NEDD1-211ENST00000557454 IFNL2Q8IZJ0 200 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 ZNF622Q969S3 477 aaKnown RBP eCLIP13.37□□□□□ -0.27
NEDD1-211ENST00000557454 GCC1Q96CN9 775 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 NCAPD2Q15021 1401 aa13.37□□□□□ -0.27
NEDD1-211ENST00000557454 AFDNP55196 1824 aaKnown RBP13.36□□□□□ -0.27
NEDD1-211ENST00000557454 NRXN2Q9P2S2 1712 aa13.36□□□□□ -0.27
NEDD1-211ENST00000557454 FER1L6Q2WGJ9 1857 aa13.36□□□□□ -0.27
NEDD1-211ENST00000557454 ADAMTS7Q9UKP4 1686 aa13.36□□□□□ -0.27
NEDD1-211ENST00000557454 RNF123Q5XPI4 1314 aa13.36□□□□□ -0.27
NEDD1-211ENST00000557454 PTCD1O75127 700 aaKnown RBP13.35□□□□□ -0.27
NEDD1-211ENST00000557454 PNMA8AQ86V59 439 aaPredicted RBP13.35□□□□□ -0.27
NEDD1-211ENST00000557454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.34□□□□□ -0.27
NEDD1-211ENST00000557454 TLL2Q9Y6L7 1015 aa13.34□□□□□ -0.27
NEDD1-211ENST00000557454 BRPF1P55201 1214 aaPredicted RBP13.33□□□□□ -0.28
NEDD1-211ENST00000557454 INTS5Q6P9B9 1019 aaKnown RBP13.33□□□□□ -0.28
NEDD1-211ENST00000557454 GGNBP2Q9H3C7 697 aa13.33□□□□□ -0.28
NEDD1-211ENST00000557454 ERVV-2B6SEH9 535 aa13.32□□□□□ -0.28
NEDD1-211ENST00000557454 TRAF5O00463 557 aa13.32□□□□□ -0.28
NEDD1-211ENST00000557454 CST9Q5W186 159 aa13.32□□□□□ -0.28
NEDD1-211ENST00000557454 CIAPIN1Q6FI81 312 aa13.32□□□□□ -0.28
NEDD1-211ENST00000557454 NBPF15Q8N660 670 aa13.32□□□□□ -0.28
NEDD1-211ENST00000557454 TONSLQ96HA7 1378 aa13.32□□□□□ -0.28
NEDD1-211ENST00000557454 BCL2L12Q9HB09 334 aa13.31□□□□□ -0.28
NEDD1-211ENST00000557454 SOS1Q07889 1333 aaPredicted RBP13.31□□□□□ -0.28
NEDD1-211ENST00000557454 COL11A2P13942 1736 aaPredicted RBP13.3□□□□□ -0.28
NEDD1-211ENST00000557454 L3MBTL2Q969R5 705 aa13.3□□□□□ -0.28
NEDD1-211ENST00000557454 NARFQ9UHQ1 456 aa13.3□□□□□ -0.28
NEDD1-211ENST00000557454 KIF24Q5T7B8 1368 aa13.3□□□□□ -0.28
NEDD1-211ENST00000557454 TJP1Q07157 1748 aa13.3□□□□□ -0.28
NEDD1-211ENST00000557454 CABP4P57796 275 aa13.29□□□□□ -0.28
NEDD1-211ENST00000557454 PRPF40BQ6NWY9 871 aaKnown RBP13.29□□□□□ -0.28
NEDD1-211ENST00000557454 BICDL1Q6ZP65 573 aa13.29□□□□□ -0.28
NEDD1-211ENST00000557454 CCDC24Q8N4L8 307 aa13.29□□□□□ -0.28
NEDD1-211ENST00000557454 EMILIN1Q9Y6C2 1016 aa13.29□□□□□ -0.28
NEDD1-211ENST00000557454 MKI67P46013 3256 aaKnown RBP13.29□□□□□ -0.28
NEDD1-211ENST00000557454 DLL1O00548 723 aa13.28□□□□□ -0.28
NEDD1-211ENST00000557454 FYB1O15117 783 aa13.28□□□□□ -0.28
NEDD1-211ENST00000557454 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
NEDD1-211ENST00000557454 FXR1P51114 621 aaKnown RBP eCLIP13.28□□□□□ -0.28
NEDD1-211ENST00000557454 SOGA3Q5TF21 947 aa13.28□□□□□ -0.28
NEDD1-211ENST00000557454 SAPCD2Q86UD0 394 aa13.28□□□□□ -0.28
NEDD1-211ENST00000557454 EYA1Q99502 592 aa13.28□□□□□ -0.28
NEDD1-211ENST00000557454 ZNF277Q9NRM2 450 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms