RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 LRRFIP2Q9Y608 721 aaKnown RBP19.63■□□□□ 0.73
SHMT2-231ENST00000557433 UBR1Q8IWV7 1749 aa19.62■□□□□ 0.73
SHMT2-231ENST00000557433 HSP90AB4PQ58FF6 505 aa19.62■□□□□ 0.73
SHMT2-231ENST00000557433 ZMYND15Q9H091 742 aa19.62■□□□□ 0.73
SHMT2-231ENST00000557433 SGSM2O43147 1006 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 FAM69CQ0P6D2 419 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 POLA2Q14181 598 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 TSHZ3Q63HK5 1081 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 RNF214Q8ND24 703 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 EYA1Q99502 592 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 USP44Q9H0E7 712 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 UBE2HP62256 183 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 CNTROBQ8N137 903 aa19.61■□□□□ 0.73
SHMT2-231ENST00000557433 MAP3K5Q99683 1374 aa19.6■□□□□ 0.73
SHMT2-231ENST00000557433 CEP170BQ9Y4F5 1589 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-231ENST00000557433 ZSCAN22P10073 491 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-231ENST00000557433 AMPHP49418 695 aa19.6■□□□□ 0.73
SHMT2-231ENST00000557433 KIF1BPQ96EK5 621 aa19.6■□□□□ 0.73
SHMT2-231ENST00000557433 CHAMP1Q96JM3 812 aa19.6■□□□□ 0.73
SHMT2-231ENST00000557433 TAF7Q15545 349 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-231ENST00000557433 PRIMPOLQ96LW4 560 aa19.59■□□□□ 0.73
SHMT2-231ENST00000557433 TTC14Q96N46 770 aa19.59■□□□□ 0.73
SHMT2-231ENST00000557433 UPF3BQ9BZI7 483 aaKnown RBP19.59■□□□□ 0.73
SHMT2-231ENST00000557433 LIMCH1Q9UPQ0 1083 aa19.59■□□□□ 0.73
SHMT2-231ENST00000557433 USP42Q9H9J4 1324 aaKnown RBP19.59■□□□□ 0.73
SHMT2-231ENST00000557433 HMGN5P82970 282 aaKnown RBP19.59■□□□□ 0.73
SHMT2-231ENST00000557433 PKNOX2Q96KN3 472 aa19.59■□□□□ 0.73
SHMT2-231ENST00000557433 UNC5CLQ8IV45 518 aa19.58■□□□□ 0.72
SHMT2-231ENST00000557433 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.58■□□□□ 0.723e-7■■□□□ 13.1
SHMT2-231ENST00000557433 RIMS1Q86UR5 1692 aaKnown RBP19.58■□□□□ 0.72
SHMT2-231ENST00000557433 TTC41PQ6P2S7 1318 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 TPM3P06753 285 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 HOXB7P09629 217 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 PI4K2BQ8TCG2 481 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 RHPN1Q8TCX5 695 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 PIBF1Q8WXW3 757 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 CRYBG1Q9Y4K1 1723 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 GADD45BO75293 160 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-231ENST00000557433 RUFY2Q8WXA3 655 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 ZSCAN31Q96LW9 406 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-231ENST00000557433 LSG1Q9H089 658 aaKnown RBP19.57■□□□□ 0.72
SHMT2-231ENST00000557433 FAM13BQ9NYF5 915 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 SNX14Q9Y5W7 946 aa19.57■□□□□ 0.72
SHMT2-231ENST00000557433 STX6O43752 255 aa19.56■□□□□ 0.72
SHMT2-231ENST00000557433 NOL8Q76FK4 1167 aaKnown RBP19.56■□□□□ 0.72
SHMT2-231ENST00000557433 USP54Q70EL1 1684 aa19.56■□□□□ 0.72
SHMT2-231ENST00000557433 MLECQ14165 292 aa19.55■□□□□ 0.72
SHMT2-231ENST00000557433 SURF6O75683 361 aaKnown RBP19.55■□□□□ 0.72
SHMT2-231ENST00000557433 PLPPR3Q6T4P5 718 aa19.55■□□□□ 0.72
SHMT2-231ENST00000557433 PPP1R42Q7Z4L9 355 aa19.55■□□□□ 0.72
SHMT2-231ENST00000557433 MYRIPQ8NFW9 859 aa19.55■□□□□ 0.72
SHMT2-231ENST00000557433 TM6SF1Q9BZW5 370 aa19.55■□□□□ 0.72
SHMT2-231ENST00000557433 SH2B1Q9NRF2 756 aaPredicted RBP19.55■□□□□ 0.72
SHMT2-231ENST00000557433 SMC3Q9UQE7 1217 aa19.55■□□□□ 0.72
SHMT2-231ENST00000557433 F13A1P00488 732 aa19.54■□□□□ 0.72
SHMT2-231ENST00000557433 GLRX3O76003 335 aaKnown RBP19.53■□□□□ 0.72
SHMT2-231ENST00000557433 RBM10P98175 930 aaKnown RBP19.53■□□□□ 0.72
SHMT2-231ENST00000557433 HDGFL1Q5TGJ6 251 aa19.53■□□□□ 0.72
SHMT2-231ENST00000557433 HDAC5Q9UQL6 1122 aa19.53■□□□□ 0.72
SHMT2-231ENST00000557433 SYT1P21579 422 aa19.53■□□□□ 0.72
SHMT2-231ENST00000557433 AK2P54819 239 aa19.53■□□□□ 0.72
SHMT2-231ENST00000557433 KCNB2Q92953 911 aa19.53■□□□□ 0.72
SHMT2-231ENST00000557433 IL1RAPL2Q9NP60 686 aa19.53■□□□□ 0.72
SHMT2-231ENST00000557433 NWD1Q149M9 1564 aa19.52■□□□□ 0.72
SHMT2-231ENST00000557433 ANKARQ7Z5J8 1434 aa19.52■□□□□ 0.72
SHMT2-231ENST00000557433 GTF2F1P35269 517 aaKnown RBP eCLIP19.52■□□□□ 0.72
SHMT2-231ENST00000557433 VPS53Q5VIR6 699 aa19.52■□□□□ 0.72
SHMT2-231ENST00000557433 NUTM1Q86Y26 1132 aa19.52■□□□□ 0.72
SHMT2-231ENST00000557433 GDPD2Q9HCC8 539 aa19.52■□□□□ 0.72
SHMT2-231ENST00000557433 SPTLC3Q9NUV7 552 aa19.52■□□□□ 0.72
SHMT2-231ENST00000557433 DIP2AQ14689 1571 aa19.52■□□□□ 0.71
SHMT2-231ENST00000557433 PIK3C2AO00443 1686 aa19.52■□□□□ 0.71
SHMT2-231ENST00000557433 KDM4AO75164 1064 aa19.51■□□□□ 0.71
SHMT2-231ENST00000557433 ADCY5O95622 1261 aa19.51■□□□□ 0.71
SHMT2-231ENST00000557433 TRHP20396 242 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-231ENST00000557433 NGDNQ8NEJ9 315 aaKnown RBP19.51■□□□□ 0.71
SHMT2-231ENST00000557433 IL17REQ8NFR9 667 aa19.51■□□□□ 0.71
SHMT2-231ENST00000557433 CNPY2Q9Y2B0 182 aa19.51■□□□□ 0.71
SHMT2-231ENST00000557433 NOLC1Q14978 699 aaKnown RBP eCLIP19.51■□□□□ 0.711e-8■■■□□ 15.5
SHMT2-231ENST00000557433 RUFY3Q7L099 469 aa19.51■□□□□ 0.71
SHMT2-231ENST00000557433 IL25Q9H293 177 aa19.51■□□□□ 0.71
SHMT2-231ENST00000557433 SOX12O15370 315 aa19.5■□□□□ 0.71
SHMT2-231ENST00000557433 SRGAP3O43295 1099 aa19.5■□□□□ 0.71
SHMT2-231ENST00000557433 MTX1Q13505 466 aa19.5■□□□□ 0.71
SHMT2-231ENST00000557433 GPATCH3Q96I76 525 aa19.5■□□□□ 0.71
SHMT2-231ENST00000557433 USP25Q9UHP3 1055 aa19.5■□□□□ 0.71
SHMT2-231ENST00000557433 TSPOAP1O95153 1857 aa19.5■□□□□ 0.71
SHMT2-231ENST00000557433 HOXC9P31274 260 aa19.49■□□□□ 0.71
SHMT2-231ENST00000557433 FUCA2Q9BTY2 467 aa19.49■□□□□ 0.71
SHMT2-231ENST00000557433 CEMIPQ8WUJ3 1361 aa19.49■□□□□ 0.71
SHMT2-231ENST00000557433 DNTTIP2Q5QJE6 756 aaKnown RBP19.49■□□□□ 0.71
SHMT2-231ENST00000557433 ERC1Q8IUD2 1116 aa19.49■□□□□ 0.71
SHMT2-231ENST00000557433 DIAPH3Q9NSV4 1193 aa19.49■□□□□ 0.71
SHMT2-231ENST00000557433 HYPKQ9NX55 129 aa19.49■□□□□ 0.71
SHMT2-231ENST00000557433 MED1Q15648 1581 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-231ENST00000557433 GOLGA6L6A8MZA4 724 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 HIP1O00291 1037 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 DNAAF4Q8WXU2 420 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 ZSWIM6Q9HCJ5 1215 aa19.47■□□□□ 0.71
SHMT2-231ENST00000557433 TBX22Q9Y458 520 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms