RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 BRCA1P38398 1863 aaKnown RBP12.93□□□□□ -0.34
SYNE2-224ENST00000557024 WASHC2AQ641Q2 1341 aa12.93□□□□□ -0.34
SYNE2-224ENST00000557024 ERVV-2B6SEH9 535 aa12.93□□□□□ -0.34
SYNE2-224ENST00000557024 VEGFAP15692 232 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-224ENST00000557024 CARD14Q9BXL6 1004 aa12.93□□□□□ -0.34
SYNE2-224ENST00000557024 TNRC6CQ9HCJ0 1690 aaKnown RBP12.93□□□□□ -0.34
SYNE2-224ENST00000557024 USP42Q9H9J4 1324 aaKnown RBP12.92□□□□□ -0.34
SYNE2-224ENST00000557024 PTCD1O75127 700 aaKnown RBP12.92□□□□□ -0.34
SYNE2-224ENST00000557024 CRKLP46109 303 aaKnown RBP12.92□□□□□ -0.34
SYNE2-224ENST00000557024 ZC3H4Q9UPT8 1303 aaKnown RBP12.91□□□□□ -0.34
SYNE2-224ENST00000557024 ARFGEF1Q9Y6D6 1849 aa12.91□□□□□ -0.34
SYNE2-224ENST00000557024 GLTPD2A6NH11 291 aa12.91□□□□□ -0.34
SYNE2-224ENST00000557024 POLRMTO00411 1230 aaKnown RBP12.91□□□□□ -0.34
SYNE2-224ENST00000557024 LMNB1P20700 586 aa12.91□□□□□ -0.34
SYNE2-224ENST00000557024 KDM6AO15550 1401 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-224ENST00000557024 CABP4P57796 275 aa12.9□□□□□ -0.34
SYNE2-224ENST00000557024 KIF20BQ96Q89 1820 aa12.9□□□□□ -0.34
SYNE2-224ENST00000557024 HSP90AB1P08238 724 aaKnown RBP12.89□□□□□ -0.35
SYNE2-224ENST00000557024 EIF4A2Q14240 407 aaKnown RBP12.89□□□□□ -0.35
SYNE2-224ENST00000557024 POLKQ9UBT6 870 aa12.89□□□□□ -0.35
SYNE2-224ENST00000557024 COL5A3P25940 1745 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-224ENST00000557024 TM4SF1P30408 202 aa12.88□□□□□ -0.35
SYNE2-224ENST00000557024 ZNF530Q6P9A1 599 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-224ENST00000557024 MKRN1Q9UHC7 482 aaKnown RBP12.88□□□□□ -0.35
SYNE2-224ENST00000557024 ZNF831Q5JPB2 1677 aa12.88□□□□□ -0.35
SYNE2-224ENST00000557024 TNNT2P45379 298 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-224ENST00000557024 CDCA8Q53HL2 280 aa12.87□□□□□ -0.35
SYNE2-224ENST00000557024 USPL1Q5W0Q7 1092 aa12.87□□□□□ -0.35
SYNE2-224ENST00000557024 INTS5Q6P9B9 1019 aaKnown RBP12.87□□□□□ -0.35
SYNE2-224ENST00000557024 ANKRD26Q9UPS8 1709 aa12.86□□□□□ -0.35
SYNE2-224ENST00000557024 POTECB2RU33 542 aa12.86□□□□□ -0.35
SYNE2-224ENST00000557024 NFKBIEO00221 500 aa12.86□□□□□ -0.35
SYNE2-224ENST00000557024 FOXN1O15353 648 aa12.86□□□□□ -0.35
SYNE2-224ENST00000557024 ZPR1O75312 459 aa12.86□□□□□ -0.35
SYNE2-224ENST00000557024 PLEKHO1Q53GL0 409 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-224ENST00000557024 SLC34A2O95436 690 aa12.85□□□□□ -0.35
SYNE2-224ENST00000557024 MTHFSP49914 203 aa12.85□□□□□ -0.35
SYNE2-224ENST00000557024 NFIXQ14938 502 aa12.85□□□□□ -0.35
SYNE2-224ENST00000557024 TTLL6Q8N841 843 aa12.85□□□□□ -0.35
SYNE2-224ENST00000557024 NFATC2IPQ8NCF5 419 aa12.85□□□□□ -0.35
SYNE2-224ENST00000557024 CREBZFQ9NS37 354 aa12.85□□□□□ -0.35
SYNE2-224ENST00000557024 MYH14Q7Z406 1995 aaKnown RBP12.84□□□□□ -0.35
SYNE2-224ENST00000557024 C2CD5Q86YS7 1000 aa12.84□□□□□ -0.35
SYNE2-224ENST00000557024 CCER1Q8TC90 406 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-224ENST00000557024 SBF1O95248 1867 aa12.83□□□□□ -0.36
SYNE2-224ENST00000557024 AMOTQ4VCS5 1084 aa12.83□□□□□ -0.36
SYNE2-224ENST00000557024 C1orf141Q5JVX7 400 aa12.83□□□□□ -0.36
SYNE2-224ENST00000557024 DPY19L2Q6NUT2 758 aa12.83□□□□□ -0.36
SYNE2-224ENST00000557024 DNAJC10Q8IXB1 793 aa12.83□□□□□ -0.36
SYNE2-224ENST00000557024 SOS1Q07889 1333 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-224ENST00000557024 H0YIN7 160 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 SERPINB2P05120 415 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 POTEIP0CG38 1075 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 POTEJP0CG39 1038 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 CHADLQ6NUI6 762 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 AEBP1Q8IUX7 1158 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 PLCD3Q8N3E9 789 aa12.82□□□□□ -0.36
SYNE2-224ENST00000557024 CARMIL3Q8ND23 1372 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 ERFEQ4G0M1 354 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 PRDM10Q9NQV6 1147 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 NARFQ9UHQ1 456 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 TJP1Q07157 1748 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 TIAM2Q8IVF5 1701 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 CNTNAP1P78357 1384 aa12.81□□□□□ -0.36
SYNE2-224ENST00000557024 ADAMTS7Q9UKP4 1686 aa12.8□□□□□ -0.36
SYNE2-224ENST00000557024 CTCFP49711 727 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-224ENST00000557024 AIDAQ96BJ3 306 aa12.8□□□□□ -0.36
SYNE2-224ENST00000557024 BCL2L12Q9HB09 334 aa12.8□□□□□ -0.36
SYNE2-224ENST00000557024 COL15A1P39059 1388 aa12.8□□□□□ -0.36
SYNE2-224ENST00000557024 C21orf2O43822 256 aa12.79□□□□□ -0.36
SYNE2-224ENST00000557024 CYP19A1P11511 503 aaPredicted RBP12.79□□□□□ -0.36
SYNE2-224ENST00000557024 BICDL1Q6ZP65 573 aa12.79□□□□□ -0.36
SYNE2-224ENST00000557024 ZNF622Q969S3 477 aaKnown RBP eCLIP12.79□□□□□ -0.36
SYNE2-224ENST00000557024 PITPNM1O00562 1244 aa12.78□□□□□ -0.36
SYNE2-224ENST00000557024 DDNO94850 711 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-224ENST00000557024 VEGFBP49765 207 aa12.78□□□□□ -0.36
SYNE2-224ENST00000557024 MIER1Q8N108 512 aa12.78□□□□□ -0.36
SYNE2-224ENST00000557024 SPOCK2Q92563 424 aa12.78□□□□□ -0.36
SYNE2-224ENST00000557024 ZBTB1Q9Y2K1 713 aa12.78□□□□□ -0.36
SYNE2-224ENST00000557024 LBX1P52954 281 aa12.77□□□□□ -0.37
SYNE2-224ENST00000557024 SLC39A6Q13433 755 aa12.77□□□□□ -0.37
SYNE2-224ENST00000557024 FAM161AQ3B820 660 aa12.77□□□□□ -0.37
SYNE2-224ENST00000557024 SULT6B1Q6IMI4 303 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 CCDC24Q8N4L8 307 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 POLR3GLQ9BT43 218 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 TAOK3Q9H2K8 898 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 SLC52A2Q9HAB3 445 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 PASKQ96RG2 1323 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 NRXN2Q9P2S2 1712 aa12.76□□□□□ -0.37
SYNE2-224ENST00000557024 CANXP27824 592 aaKnown RBP12.75□□□□□ -0.37
SYNE2-224ENST00000557024 LDHDQ86WU2 507 aa12.75□□□□□ -0.37
SYNE2-224ENST00000557024 ABHD8Q96I13 439 aa12.75□□□□□ -0.37
SYNE2-224ENST00000557024 DLEC1Q9Y238 1755 aa12.74□□□□□ -0.37
SYNE2-224ENST00000557024 LTBP3Q9NS15 1303 aa12.74□□□□□ -0.37
SYNE2-224ENST00000557024 TMEM88BA6NKF7 163 aa12.74□□□□□ -0.37
SYNE2-224ENST00000557024 LGR6Q9HBX8 967 aa12.74□□□□□ -0.37
SYNE2-224ENST00000557024 WBP1LQ9NX94 342 aa12.74□□□□□ -0.37
SYNE2-224ENST00000557024 AFDNP55196 1824 aaKnown RBP12.74□□□□□ -0.37
SYNE2-224ENST00000557024 IQCA1LA6NCM1 817 aa12.73□□□□□ -0.37
SYNE2-224ENST00000557024 HSPA8P11142 646 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms