RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ESPNB1AK53 854 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 M0R082 166 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 CD33P20138 364 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 NEUROD2Q15784 382 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 ZNF417Q8TAU3 575 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 ADAM32Q8TC27 787 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 ZNF587Q96SQ5 575 aaPredicted RBP4.78□□□□□ -1.64
SLIRP-208ENST00000556956 FAM117AQ9C073 453 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 GPBP1L1Q9HC44 474 aaPredicted RBP4.78□□□□□ -1.64
SLIRP-208ENST00000556956 GOPCQ9HD26 462 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 AVENQ9NQS1 362 aaPredicted RBP4.78□□□□□ -1.64
SLIRP-208ENST00000556956 DNAAF2Q9NVR5 837 aaKnown RBP4.78□□□□□ -1.64
SLIRP-208ENST00000556956 LIMD1Q9UGP4 676 aa4.78□□□□□ -1.64
SLIRP-208ENST00000556956 KIAA1324LA8MWY0 1029 aaPredicted RBP4.77□□□□□ -1.65
SLIRP-208ENST00000556956 NID1P14543 1247 aa4.77□□□□□ -1.65
SLIRP-208ENST00000556956 POU5F2Q8N7G0 328 aa4.77□□□□□ -1.65
SLIRP-208ENST00000556956 PNMA1Q8ND90 353 aa4.77□□□□□ -1.65
SLIRP-208ENST00000556956 LENG1Q96BZ8 264 aaPredicted RBP4.77□□□□□ -1.65
SLIRP-208ENST00000556956 ELOA3CA0A087WX78 387 aaPredicted RBP4.76□□□□□ -1.65
SLIRP-208ENST00000556956 ELOA3DA6NLF2 546 aaPredicted RBP4.76□□□□□ -1.65
SLIRP-208ENST00000556956 ELOA3BQ3SY89 546 aa4.76□□□□□ -1.65
SLIRP-208ENST00000556956 TPRNQ4KMQ1 711 aa4.76□□□□□ -1.65
SLIRP-208ENST00000556956 ELOA3Q8NG57 546 aa4.76□□□□□ -1.65
SLIRP-208ENST00000556956 PCMTD1Q96MG8 357 aaPredicted RBP4.76□□□□□ -1.65
SLIRP-208ENST00000556956 MDFIQ99750 246 aa4.76□□□□□ -1.65
SLIRP-208ENST00000556956 ZCCHC2Q9C0B9 1178 aaKnown RBP4.76□□□□□ -1.65
SLIRP-208ENST00000556956 STARD13Q9Y3M8 1113 aa4.76□□□□□ -1.65
SLIRP-208ENST00000556956 QPCTQ16769 361 aa4.75□□□□□ -1.65
SLIRP-208ENST00000556956 ZNF468Q5VIY5 522 aaPredicted RBP4.75□□□□□ -1.65
SLIRP-208ENST00000556956 ADGRE2Q9UHX3 823 aa4.75□□□□□ -1.65
SLIRP-208ENST00000556956 ALBP02768 609 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 ZNF865P0CJ78 1059 aaPredicted RBP4.74□□□□□ -1.65
SLIRP-208ENST00000556956 TMEM259Q4ZIN3 620 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 RTL5Q5HYW3 569 aaPredicted RBP4.74□□□□□ -1.65
SLIRP-208ENST00000556956 FAM182BQ5T319 152 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 PPP2R2DQ66LE6 453 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.74□□□□□ -1.652e-6■□□□□ 10.5
SLIRP-208ENST00000556956 ARHGEF10LQ9HCE6 1279 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 PRDM6Q9NQX0 595 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 FKBPLQ9UIM3 349 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 PCDHGC4Q9Y5F7 938 aa4.74□□□□□ -1.65
SLIRP-208ENST00000556956 DCDC2BA2VCK2 349 aa4.73□□□□□ -1.65
SLIRP-208ENST00000556956 FSTP19883 344 aa4.73□□□□□ -1.65
SLIRP-208ENST00000556956 PRR23CQ6ZRP0 262 aa4.73□□□□□ -1.65
SLIRP-208ENST00000556956 IL27Q8NEV9 243 aa4.73□□□□□ -1.65
SLIRP-208ENST00000556956 CRISPLD1Q9H336 500 aa4.73□□□□□ -1.65
SLIRP-208ENST00000556956 MAPTP10636 758 aaKnown RBP4.72□□□□□ -1.65
SLIRP-208ENST00000556956 ALAS2P22557 587 aa4.72□□□□□ -1.65
SLIRP-208ENST00000556956 CTDSPL2Q05D32 466 aa4.72□□□□□ -1.65
SLIRP-208ENST00000556956 C4orf17Q53FE4 359 aa4.72□□□□□ -1.65
SLIRP-208ENST00000556956 TRAPPC3LQ5T215 181 aa4.72□□□□□ -1.65
SLIRP-208ENST00000556956 MICALL1Q8N3F8 863 aa4.72□□□□□ -1.65
SLIRP-208ENST00000556956 PROCA1Q8NCQ7 364 aaPredicted RBP4.72□□□□□ -1.65
SLIRP-208ENST00000556956 RAB6BQ9NRW1 208 aa4.72□□□□□ -1.65
SLIRP-208ENST00000556956 A0A0A0MRY4 1105 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 AP1G2O75843 785 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 TGFB1P01137 390 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 BRPF1P55201 1214 aaPredicted RBP4.71□□□□□ -1.66
SLIRP-208ENST00000556956 TNP2Q05952 138 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 USP21Q9UK80 565 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 PRR12Q9ULL5 1215 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 NCANO14594 1321 aa4.71□□□□□ -1.66
SLIRP-208ENST00000556956 ZC3H4Q9UPT8 1303 aaKnown RBP4.71□□□□□ -1.66
SLIRP-208ENST00000556956 APBB1O00213 710 aa4.7□□□□□ -1.66
SLIRP-208ENST00000556956 ATXN7O15265 892 aaPredicted RBP4.7□□□□□ -1.66
SLIRP-208ENST00000556956 CENPCQ03188 943 aa4.7□□□□□ -1.66
SLIRP-208ENST00000556956 PTK2Q05397 1052 aa4.7□□□□□ -1.66
SLIRP-208ENST00000556956 FIGNL1Q6PIW4 674 aa4.7□□□□□ -1.66
SLIRP-208ENST00000556956 DZIP3Q86Y13 1208 aaKnown RBP4.7□□□□□ -1.66
SLIRP-208ENST00000556956 PRRG2O14669 202 aa4.69□□□□□ -1.66
SLIRP-208ENST00000556956 ERVK-9P63128 1117 aa4.69□□□□□ -1.66
SLIRP-208ENST00000556956 MEGF10Q96KG7 1140 aa4.69□□□□□ -1.66
SLIRP-208ENST00000556956 GPSM3Q9Y4H4 160 aa4.69□□□□□ -1.66
SLIRP-208ENST00000556956 KHNYNO15037 678 aaKnown RBP4.68□□□□□ -1.66
SLIRP-208ENST00000556956 IL2RAP01589 272 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 SPINK2P20155 84 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 RFC5P40937 340 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 BUD31P41223 144 aaPredicted RBP4.68□□□□□ -1.66
SLIRP-208ENST00000556956 SCTRP47872 440 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 IREB2P48200 963 aaKnown RBP4.68□□□□□ -1.66
SLIRP-208ENST00000556956 CC2D2BQ6DHV5 1058 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 SEPT12Q8IYM1 358 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 WFDC12Q8WWY7 111 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 ZSCAN10Q96SZ4 725 aaPredicted RBP4.68□□□□□ -1.66
SLIRP-208ENST00000556956 STRN4Q9NRL3 753 aa4.68□□□□□ -1.66
SLIRP-208ENST00000556956 NOS3P29474 1203 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 KRTAP1-1Q07627 177 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 ZNF124Q15973 351 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 CYP2U1Q7Z449 544 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 SYT9Q86SS6 491 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 SLC51AQ86UW1 340 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 BANK1Q8NDB2 785 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 ZNF592Q92610 1267 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 CNKSR1Q969H4 720 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 PRM3Q9NNZ6 103 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 CCDC180Q9P1Z9 1646 aa4.67□□□□□ -1.66
SLIRP-208ENST00000556956 ADARB2-AS1A8MUL3 147 aa4.66□□□□□ -1.66
SLIRP-208ENST00000556956 NR6A1Q15406 480 aa4.66□□□□□ -1.66
SLIRP-208ENST00000556956 GNASQ5JWF2 1037 aa4.66□□□□□ -1.66
SLIRP-208ENST00000556956 C20orf204Q6ZNR8 217 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms