RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	MAPK8IP3	Q9UPT6	1336 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	LOC102724428	A0A0B4J2F2	783 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	TTLL13P	A6NNM8	815 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	APAF1	O14727	1248 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	ATN1	P54259	1190 aa	Predicted RBP	11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	SIK1	P57059	783 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	AMIGO3	Q86WK7	504 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	FAM9B	Q8IZU0	186 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	RUNDC1	Q96C34	613 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	TOGARAM1	Q9Y4F4	1720 aa		11.66	□□□□□ -0.54
PRKCH-222	ENST00000556778	NHS	Q6T4R5	1651 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	ATP6V1A	P38606	617 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	SLC15A2	Q16348	729 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	SLC27A3	Q5K4L6	730 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	NBPF14	Q5TI25	921 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	LINC00116	Q8NCU8	138 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	RTF1	Q92541	710 aa	Known RBP	11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	SMARCC1	Q92922	1105 aa	Predicted RBP	11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	PNN	Q9H307	717 aa	Known RBP	11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	TRIM35	Q9UPQ4	493 aa		11.65	□□□□□ -0.54
PRKCH-222	ENST00000556778	DOT1L	Q8TEK3	1739 aa		11.64	□□□□□ -0.55
PRKCH-222	ENST00000556778	BTBD11	A6QL63	1104 aa		11.64	□□□□□ -0.55
PRKCH-222	ENST00000556778	NEFM	P07197	916 aa		11.64	□□□□□ -0.55
PRKCH-222	ENST00000556778	TEF	Q10587	303 aa		11.64	□□□□□ -0.55
PRKCH-222	ENST00000556778	RNF25	Q96BH1	459 aa	Predicted RBP	11.64	□□□□□ -0.55
PRKCH-222	ENST00000556778	CEMIP	Q8WUJ3	1361 aa		11.64	□□□□□ -0.55
PRKCH-222	ENST00000556778	HTATSF1	O43719	755 aa	Known RBP	11.63	□□□□□ -0.55
PRKCH-222	ENST00000556778	STK32B	Q9NY57	414 aa		11.63	□□□□□ -0.55
PRKCH-222	ENST00000556778	SALL2	Q9Y467	1007 aa	Predicted RBP	11.63	□□□□□ -0.55
PRKCH-222	ENST00000556778	SBF2	Q86WG5	1849 aa		11.63	□□□□□ -0.55
PRKCH-222	ENST00000556778	PRAMEF22	A3QJZ6	481 aa		11.62	□□□□□ -0.55
PRKCH-222	ENST00000556778	DNAJC10	Q8IXB1	793 aa		11.62	□□□□□ -0.55
PRKCH-222	ENST00000556778	ZNF496	Q96IT1	587 aa	Predicted RBP	11.62	□□□□□ -0.55
PRKCH-222	ENST00000556778	TAF7	Q15545	349 aa	Predicted RBP	11.61	□□□□□ -0.55
PRKCH-222	ENST00000556778	ZNF790	Q6PG37	636 aa		11.61	□□□□□ -0.55
PRKCH-222	ENST00000556778	TMEM106C	Q9BVX2	250 aa		11.61	□□□□□ -0.55
PRKCH-222	ENST00000556778	TFCP2L1	Q9NZI6	479 aa		11.61	□□□□□ -0.55
PRKCH-222	ENST00000556778	BTAF1	O14981	1849 aa		11.6	□□□□□ -0.55
PRKCH-222	ENST00000556778	ZBTB7A	O95365	584 aa		11.6	□□□□□ -0.55
PRKCH-222	ENST00000556778	COL23A1	Q86Y22	540 aa	Predicted RBP	11.6	□□□□□ -0.55
PRKCH-222	ENST00000556778	PNPLA7	Q6ZV29	1317 aa		11.6	□□□□□ -0.55
PRKCH-222	ENST00000556778	PHF14	O94880	888 aa		11.59	□□□□□ -0.55
PRKCH-222	ENST00000556778	INTS5	Q6P9B9	1019 aa	Known RBP	11.59	□□□□□ -0.55
PRKCH-222	ENST00000556778	TTC5	Q8N0Z6	440 aa		11.59	□□□□□ -0.55
PRKCH-222	ENST00000556778	LAS1L	Q9Y4W2	734 aa	Known RBP	11.59	□□□□□ -0.55
PRKCH-222	ENST00000556778	MRC1	P22897	1456 aa		11.58	□□□□□ -0.56
PRKCH-222	ENST00000556778	ECM2	O94769	699 aa	Predicted RBP	11.58	□□□□□ -0.56
PRKCH-222	ENST00000556778	CYP19A1	P11511	503 aa	Predicted RBP	11.58	□□□□□ -0.56
PRKCH-222	ENST00000556778	USP16	Q9Y5T5	823 aa		11.58	□□□□□ -0.56
PRKCH-222	ENST00000556778	SRCAP	Q6ZRS2	3230 aa		11.58	□□□□□ -0.56
PRKCH-222	ENST00000556778	CCER2	I3L3R5	266 aa		11.57	□□□□□ -0.56
PRKCH-222	ENST00000556778	GNPAT	O15228	680 aa		11.57	□□□□□ -0.56
PRKCH-222	ENST00000556778	CRKL	P46109	303 aa	Known RBP	11.57	□□□□□ -0.56
PRKCH-222	ENST00000556778	PIP4K2A	P48426	406 aa	Predicted RBP	11.57	□□□□□ -0.56
PRKCH-222	ENST00000556778	KRT24	Q2M2I5	525 aa		11.57	□□□□□ -0.56
PRKCH-222	ENST00000556778	AK7	Q96M32	723 aa		11.57	□□□□□ -0.56
PRKCH-222	ENST00000556778	KCP	Q6ZWJ8	1503 aa		11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	A1BG	P04217	495 aa		11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	PSEN1	P49768	467 aa		11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	EIF4A1	P60842	406 aa	Known RBP	11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	PDAP1	Q13442	181 aa	Known RBP	11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	NUP188	Q5SRE5	1749 aa		11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	FMNL2	Q96PY5	1086 aa		11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	TSPYL4	Q9UJ04	414 aa		11.56	□□□□□ -0.56
PRKCH-222	ENST00000556778	RREB1	Q92766	1687 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	ADAMTS7	Q9UKP4	1686 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	HEG1	Q9ULI3	1381 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	CHL1	O00533	1208 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	RIOK3	O14730	519 aa	Known RBP	11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	CANX	P27824	592 aa	Known RBP	11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	MSL1	Q68DK7	614 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	WWC1	Q8IX03	1113 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	SLC39A7	Q92504	469 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	ARHGEF1	Q92888	912 aa	Known RBP	11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	METRN	Q9UJH8	293 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	ZBTB1	Q9Y2K1	713 aa		11.55	□□□□□ -0.56
PRKCH-222	ENST00000556778	PAPPA	Q13219	1627 aa		11.54	□□□□□ -0.56
PRKCH-222	ENST00000556778	ITGB4	P16144	1822 aa		11.54	□□□□□ -0.56
PRKCH-222	ENST00000556778	RPS6KA4	O75676	772 aa		11.54	□□□□□ -0.56
PRKCH-222	ENST00000556778	LMOD3	Q0VAK6	560 aa		11.54	□□□□□ -0.56
PRKCH-222	ENST00000556778	RC3H1	Q5TC82	1133 aa	Known RBP	11.54	□□□□□ -0.56
PRKCH-222	ENST00000556778	VSIG10	Q8N0Z9	540 aa		11.54	□□□□□ -0.56
PRKCH-222	ENST00000556778	GIGYF1	O75420	1035 aa	Predicted RBP	11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	ZNF853	P0CG23	659 aa		11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	PTGER2	P43116	358 aa		11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	TRAPPC3L	Q5T215	181 aa		11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	MBIP	Q9NS73	344 aa		11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	CCDC87	Q9NVE4	849 aa		11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	SRP68	Q9UHB9	627 aa	Known RBP	11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	RTCB	Q9Y3I0	505 aa	Known RBP	11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	CNTNAP4	Q9C0A0	1308 aa		11.53	□□□□□ -0.56
PRKCH-222	ENST00000556778	NBPF26	B4DH59	902 aa		11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	RGL2	O15211	777 aa		11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	SNRPA1	P09661	255 aa	Known RBP	11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	NBPF10	Q6P3W6	841 aa	Known RBP	11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	NBPF15	Q8N660	670 aa		11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	NECTIN2	Q92692	538 aa		11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	TSR2	Q969E8	191 aa	Known RBP	11.52	□□□□□ -0.57
PRKCH-222	ENST00000556778	CFAP44	Q96MT7	982 aa		11.52	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms