RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 THSD7AQ9UPZ6 1657 aa18.5■□□□□ 0.55
VPS33B-205ENST00000556096 PXDNLA1KZ92 1463 aa18.49■□□□□ 0.55
VPS33B-205ENST00000556096 F6X3S4 739 aa18.49■□□□□ 0.55
VPS33B-205ENST00000556096 EIF2S2P20042 333 aaKnown RBP18.49■□□□□ 0.55
VPS33B-205ENST00000556096 SIRT2Q8IXJ6 389 aa18.49■□□□□ 0.55
VPS33B-205ENST00000556096 RPAP2Q8IXW5 612 aaPredicted RBP18.49■□□□□ 0.55
VPS33B-205ENST00000556096 C1orf115Q9H7X2 142 aa18.49■□□□□ 0.55
VPS33B-205ENST00000556096 PCDH11XQ9BZA7 1347 aa18.49■□□□□ 0.55
VPS33B-205ENST00000556096 PCDH11YQ9BZA8 1340 aa18.49■□□□□ 0.55
VPS33B-205ENST00000556096 ONECUT3O60422 494 aaPredicted RBP18.48■□□□□ 0.55
VPS33B-205ENST00000556096 ZNF790Q6PG37 636 aa18.48■□□□□ 0.55
VPS33B-205ENST00000556096 NFATC2IPQ8NCF5 419 aa18.48■□□□□ 0.55
VPS33B-205ENST00000556096 NUCB1Q02818 461 aa18.47■□□□□ 0.55
VPS33B-205ENST00000556096 C8orf34Q49A92 452 aa18.47■□□□□ 0.55
VPS33B-205ENST00000556096 SLC4A10Q6U841 1118 aa18.47■□□□□ 0.55
VPS33B-205ENST00000556096 DBF4Q9UBU7 674 aaPredicted RBP18.47■□□□□ 0.55
VPS33B-205ENST00000556096 NKX1-1Q15270 411 aaPredicted RBP18.46■□□□□ 0.55
VPS33B-205ENST00000556096 DDB1Q16531 1140 aa18.46■□□□□ 0.55
VPS33B-205ENST00000556096 ANKRD44Q8N8A2 993 aa18.46■□□□□ 0.55
VPS33B-205ENST00000556096 CHPF2Q9P2E5 772 aa18.46■□□□□ 0.55
VPS33B-205ENST00000556096 MEIS3Q99687 375 aa18.46■□□□□ 0.55
VPS33B-205ENST00000556096 PHAXQ9H814 394 aaKnown RBP18.46■□□□□ 0.55
VPS33B-205ENST00000556096 N4BP2Q86UW6 1770 aaPredicted RBP18.45■□□□□ 0.54
VPS33B-205ENST00000556096 TOGARAM1Q9Y4F4 1720 aa18.45■□□□□ 0.54
VPS33B-205ENST00000556096 ATP10DQ9P241 1426 aa18.45■□□□□ 0.54
VPS33B-205ENST00000556096 TNS2Q63HR2 1409 aa18.44■□□□□ 0.54
VPS33B-205ENST00000556096 EXOC5O00471 708 aa18.44■□□□□ 0.54
VPS33B-205ENST00000556096 DDX54Q8TDD1 881 aaKnown RBP18.44■□□□□ 0.54
VPS33B-205ENST00000556096 ERVV-2B6SEH9 535 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 GNAI3P08754 354 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 CABP4P57796 275 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 CEP85Q6P2H3 762 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 SLC39A6Q13433 755 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 KRT27Q7Z3Y8 459 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 CHD1LQ86WJ1 897 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 CDCA7Q9BWT1 371 aaPredicted RBP18.43■□□□□ 0.54
VPS33B-205ENST00000556096 DCTPP1Q9H773 170 aa18.43■□□□□ 0.54
VPS33B-205ENST00000556096 HYPKQ9NX55 129 aa18.42■□□□□ 0.54
VPS33B-205ENST00000556096 TTC5Q8N0Z6 440 aa18.41■□□□□ 0.54
VPS33B-205ENST00000556096 MARCH10Q8NA82 808 aaPredicted RBP18.41■□□□□ 0.54
VPS33B-205ENST00000556096 DDX21Q9NR30 783 aaKnown RBP eCLIP18.41■□□□□ 0.54
VPS33B-205ENST00000556096 GNAI2P04899 355 aa18.4■□□□□ 0.54
VPS33B-205ENST00000556096 ITGB4P16144 1822 aa18.4■□□□□ 0.54
VPS33B-205ENST00000556096 PRAMEF22A3QJZ6 481 aa18.4■□□□□ 0.54
VPS33B-205ENST00000556096 SNRPA1P09661 255 aaKnown RBP18.4■□□□□ 0.54
VPS33B-205ENST00000556096 ANP32AP39687 249 aaKnown RBP18.4■□□□□ 0.54
VPS33B-205ENST00000556096 DNAAF4Q8WXU2 420 aa18.4■□□□□ 0.54
VPS33B-205ENST00000556096 ZNF496Q96IT1 587 aaPredicted RBP18.4■□□□□ 0.54
VPS33B-205ENST00000556096 FMNL2Q96PY5 1086 aa18.4■□□□□ 0.54
VPS33B-205ENST00000556096 ANKRD45Q5TZF3 282 aa18.39■□□□□ 0.53
VPS33B-205ENST00000556096 SRCIN1Q9C0H9 1055 aa18.39■□□□□ 0.53
VPS33B-205ENST00000556096 DOT1LQ8TEK3 1739 aa18.39■□□□□ 0.53
VPS33B-205ENST00000556096 PI4KAP2A4QPH2 592 aa18.38■□□□□ 0.53
VPS33B-205ENST00000556096 HMMRO75330 724 aa18.38■□□□□ 0.53
VPS33B-205ENST00000556096 PI4KAP1Q8N8J0 262 aa18.38■□□□□ 0.53
VPS33B-205ENST00000556096 ADCY9O60503 1353 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 ANXA1P04083 346 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 PDIA6Q15084 440 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 BEND3Q5T5X7 828 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 LNPKQ9C0E8 428 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 USP44Q9H0E7 712 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 C5P01031 1676 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 PROSER3Q2NL68 480 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 KSR2Q6VAB6 950 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 EP400Q96L91 3159 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 PAPPAQ13219 1627 aa18.37■□□□□ 0.53
VPS33B-205ENST00000556096 KAT6BQ8WYB5 2073 aa18.36■□□□□ 0.53
VPS33B-205ENST00000556096 DDX58O95786 925 aaKnown RBP18.35■□□□□ 0.53
VPS33B-205ENST00000556096 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
VPS33B-205ENST00000556096 ATP8B2P98198 1209 aa18.35■□□□□ 0.53
VPS33B-205ENST00000556096 ALDH1L1O75891 902 aa18.34■□□□□ 0.53
VPS33B-205ENST00000556096 UBTFL1P0CB47 393 aaPredicted RBP18.34■□□□□ 0.53
VPS33B-205ENST00000556096 UBR2Q8IWV8 1755 aa18.33■□□□□ 0.53
VPS33B-205ENST00000556096 PTF1AQ7RTS3 328 aa18.33■□□□□ 0.52
VPS33B-205ENST00000556096 MAP3K2Q9Y2U5 619 aa18.33■□□□□ 0.52
VPS33B-205ENST00000556096 USP16Q9Y5T5 823 aa18.33■□□□□ 0.52
VPS33B-205ENST00000556096 IBTKQ9P2D0 1353 aaPredicted RBP18.33■□□□□ 0.52
VPS33B-205ENST00000556096 ERBB4Q15303 1308 aa18.32■□□□□ 0.52
VPS33B-205ENST00000556096 IPO9Q96P70 1041 aaKnown RBP18.32■□□□□ 0.52
VPS33B-205ENST00000556096 LRRFIP2Q9Y608 721 aaKnown RBP18.32■□□□□ 0.52
VPS33B-205ENST00000556096 LAMB4A4D0S4 1761 aa18.31■□□□□ 0.52
VPS33B-205ENST00000556096 LRP10Q7Z4F1 713 aa18.31■□□□□ 0.52
VPS33B-205ENST00000556096 ZBTB47Q9UFB7 747 aaPredicted RBP18.31■□□□□ 0.52
VPS33B-205ENST00000556096 KCNQ2O43526 872 aa18.3■□□□□ 0.52
VPS33B-205ENST00000556096 TRIM37O94972 964 aa18.3■□□□□ 0.52
VPS33B-205ENST00000556096 NPM2Q86SE8 214 aaKnown RBP18.3■□□□□ 0.52
VPS33B-205ENST00000556096 LINS1Q8NG48 757 aa18.3■□□□□ 0.52
VPS33B-205ENST00000556096 SYTL4Q96C24 671 aaPredicted RBP18.3■□□□□ 0.52
VPS33B-205ENST00000556096 KCPQ6ZWJ8 1503 aa18.3■□□□□ 0.52
VPS33B-205ENST00000556096 MSH5O43196 834 aa18.29■□□□□ 0.52
VPS33B-205ENST00000556096 BMP2KLQ5H9B9 411 aa18.29■□□□□ 0.52
VPS33B-205ENST00000556096 FAM196AQ6ZSG2 479 aa18.29■□□□□ 0.52
VPS33B-205ENST00000556096 HDAC5Q9UQL6 1122 aa18.29■□□□□ 0.52
VPS33B-205ENST00000556096 TMOD3Q9NYL9 352 aa18.29■□□□□ 0.52
VPS33B-205ENST00000556096 MYL6BP14649 208 aa18.28■□□□□ 0.52
VPS33B-205ENST00000556096 AIMP1Q12904 312 aaKnown RBP18.28■□□□□ 0.52
VPS33B-205ENST00000556096 COPS6Q7L5N1 327 aa18.28■□□□□ 0.52
VPS33B-205ENST00000556096 SSH3Q8TE77 659 aa18.28■□□□□ 0.52
VPS33B-205ENST00000556096 XAGE3Q8WTP9 111 aa18.28■□□□□ 0.52
VPS33B-205ENST00000556096 PNMA6EA0A0J9YXQ4 647 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms