RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 BICRAQ9NZM4 1560 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 PIK3R4Q99570 1358 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 IDH1O75874 414 aaKnown RBP12.47□□□□□ -0.41
ACTN1-216ENST00000556083 NEBLO76041 1014 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 USP37Q86T82 979 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 FAM177BA6PVY3 158 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 POLR3DP05423 398 aaPredicted RBP12.47□□□□□ -0.41
ACTN1-216ENST00000556083 CCDC172P0C7W6 258 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 MYL6BP14649 208 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 GSDMDP57764 484 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 SLC26A8Q96RN1 970 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 GRIN2AQ12879 1464 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 TUBB4AP04350 444 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 DZIP1Q86YF9 867 aaKnown RBP12.47□□□□□ -0.41
ACTN1-216ENST00000556083 USO1O60763 962 aaKnown RBP12.47□□□□□ -0.41
ACTN1-216ENST00000556083 RNF214Q8ND24 703 aa12.47□□□□□ -0.41
ACTN1-216ENST00000556083 SMARCC1Q92922 1105 aaPredicted RBP12.47□□□□□ -0.41
ACTN1-216ENST00000556083 EXOC5O00471 708 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 BRPF1P55201 1214 aaPredicted RBP12.46□□□□□ -0.41
ACTN1-216ENST00000556083 ZHX3Q9H4I2 956 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 MCM5P33992 734 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 GNAQP50148 359 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 FERMT1Q9BQL6 677 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 SIL1Q9H173 461 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 MTMR7Q9Y216 660 aa12.46□□□□□ -0.41
ACTN1-216ENST00000556083 MCM4P33991 863 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 TSPYL1Q9H0U9 437 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 B4DLN1 442 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 GOLIM4O00461 696 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 RAPGEF3O95398 923 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 SFPQP23246 707 aaKnown RBP eCLIP12.46□□□□□ -0.42
ACTN1-216ENST00000556083 MRPL12P52815 198 aaKnown RBP12.46□□□□□ -0.42
ACTN1-216ENST00000556083 CATIPQ7Z7H3 387 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 TAOK3Q9H2K8 898 aa12.46□□□□□ -0.42
ACTN1-216ENST00000556083 ZNF213O14771 459 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 PDE4BQ07343 736 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 CCDC183Q5T5S1 534 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 FEZ1Q99689 392 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 LIMCH1Q9UPQ0 1083 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 BCAR3O75815 825 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 C8orf76Q96K31 380 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 FAM107BQ9H098 131 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 GRPEL1Q9HAV7 217 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 KIAA1328Q86T90 577 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 C14orf93Q9H972 538 aaKnown RBP12.45□□□□□ -0.42
ACTN1-216ENST00000556083 ECHDC1Q9NTX5 307 aa12.45□□□□□ -0.42
ACTN1-216ENST00000556083 HLA-DOAP06340 250 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 TUBB4BP68371 445 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 CWC27Q6UX04 472 aaKnown RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 NAA15Q9BXJ9 866 aaKnown RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 CCDC194A0A1B0GVG4 234 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 TAF3Q5VWG9 929 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 EHBP1Q8NDI1 1231 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 RPGRQ92834 1020 aaKnown RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 SLC12A7Q9Y666 1083 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 FMNL3Q8IVF7 1028 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 NBPF7P0C2Y1 421 aaPredicted RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 RARSP54136 660 aaKnown RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 IFI16Q16666 785 aaKnown RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 ZSCAN16Q9H4T2 348 aaPredicted RBP12.44□□□□□ -0.42
ACTN1-216ENST00000556083 TCP11L1Q9NUJ3 509 aa12.44□□□□□ -0.42
ACTN1-216ENST00000556083 ALDH1L1O75891 902 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 UBXN4Q92575 508 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 CABP5Q9NP86 173 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 SSBP05455 408 aaKnown RBP eCLIP12.43□□□□□ -0.42
ACTN1-216ENST00000556083 TMEM57Q8N5G2 664 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 PLVAPQ9BX97 442 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 PTPN23Q9H3S7 1636 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 ABCC5O15440 1437 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 PATL2C9JE40 543 aaKnown RBP12.43□□□□□ -0.42
ACTN1-216ENST00000556083 CASTP20810 708 aaKnown RBP12.43□□□□□ -0.42
ACTN1-216ENST00000556083 SSRP1Q08945 709 aaKnown RBP12.43□□□□□ -0.42
ACTN1-216ENST00000556083 UVSSAQ2YD98 709 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 BMP2KLQ5H9B9 411 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 HOOK3Q86VS8 718 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 CALML4Q96GE6 196 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 KIF5CO60282 957 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 PAFAH1B1P43034 410 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 DHX37Q8IY37 1157 aaKnown RBP12.43□□□□□ -0.42
ACTN1-216ENST00000556083 CNNM2Q9H8M5 875 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 RMND1Q9NWS8 449 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 ABCF2Q9UG63 623 aa12.43□□□□□ -0.42
ACTN1-216ENST00000556083 C1orf115Q9H7X2 142 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 CWC25Q9NXE8 425 aaPredicted RBP12.42□□□□□ -0.42
ACTN1-216ENST00000556083 SNRPA1P09661 255 aaKnown RBP12.42□□□□□ -0.42
ACTN1-216ENST00000556083 ANAPC15P60006 121 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 AMOTL2Q9Y2J4 779 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 YEATS4O95619 227 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 SPAG1Q07617 926 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 CFAP100Q494V2 611 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 LRRC45Q96CN5 670 aa12.42□□□□□ -0.42
ACTN1-216ENST00000556083 TRMT112Q9UI30 125 aaKnown RBP12.42□□□□□ -0.42
ACTN1-216ENST00000556083 GOLGA6L10A0A0M3HER8 536 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 NUTM2BA6NNL0 878 aaPredicted RBP12.41□□□□□ -0.42
ACTN1-216ENST00000556083 NUTM2EB1AL46 878 aaPredicted RBP12.41□□□□□ -0.42
ACTN1-216ENST00000556083 GCOM1H8Y6P7 765 aaPredicted RBP12.41□□□□□ -0.42
ACTN1-216ENST00000556083 MYZAPP0CAP1 466 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 FILIP1Q7Z7B0 1213 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 NUTM2AQ8IVF1 878 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms