RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 RNMTO43148 476 aaKnown RBP8.6□□□□□ -1.03
TMEM260-209ENST00000556079 PRKAR2BP31323 418 aa8.6□□□□□ -1.03
TMEM260-209ENST00000556079 ATP6V1AP38606 617 aa8.6□□□□□ -1.03
TMEM260-209ENST00000556079 RSPH6AQ9H0K4 717 aa8.6□□□□□ -1.03
TMEM260-209ENST00000556079 ATP10DQ9P241 1426 aa8.6□□□□□ -1.03
TMEM260-209ENST00000556079 UBR2Q8IWV8 1755 aa8.6□□□□□ -1.03
TMEM260-209ENST00000556079 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.59□□□□□ -1.03
TMEM260-209ENST00000556079 ERVV-2B6SEH9 535 aa8.59□□□□□ -1.03
TMEM260-209ENST00000556079 GNPATO15228 680 aa8.59□□□□□ -1.03
TMEM260-209ENST00000556079 GALR2O43603 387 aaPredicted RBP8.59□□□□□ -1.03
TMEM260-209ENST00000556079 GRIN3BO60391 1043 aa8.59□□□□□ -1.03
TMEM260-209ENST00000556079 AMOTQ4VCS5 1084 aa8.59□□□□□ -1.03
TMEM260-209ENST00000556079 IFFO2Q5TF58 517 aa8.59□□□□□ -1.03
TMEM260-209ENST00000556079 ZNF526Q8TF50 670 aaPredicted RBP8.59□□□□□ -1.03
TMEM260-209ENST00000556079 SMARCC1Q92922 1105 aaPredicted RBP8.59□□□□□ -1.03
TMEM260-209ENST00000556079 AK7Q96M32 723 aa8.59□□□□□ -1.03
TMEM260-209ENST00000556079 RTN4Q9NQC3 1192 aaKnown RBP8.59□□□□□ -1.03
TMEM260-209ENST00000556079 KCNQ3O43525 872 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 U2AF1L5P0DN76 240 aaPredicted RBP8.58□□□□□ -1.04
TMEM260-209ENST00000556079 CLCN6P51797 869 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 U2AF1Q01081 240 aaKnown RBP eCLIP8.58□□□□□ -1.04
TMEM260-209ENST00000556079 DCTN1Q14203 1278 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 AKAP4Q5JQC9 854 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 DNAJC10Q8IXB1 793 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 IL17REQ8NFR9 667 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 DCBLD2Q96PD2 775 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 SLC52A2Q9HAB3 445 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 ZNF831Q5JPB2 1677 aa8.58□□□□□ -1.04
TMEM260-209ENST00000556079 PCNTO95613 3336 aa8.57□□□□□ -1.04
TMEM260-209ENST00000556079 RASEFQ8IZ41 740 aa8.57□□□□□ -1.04
TMEM260-209ENST00000556079 ZBTB47Q9UFB7 747 aaPredicted RBP8.57□□□□□ -1.04
TMEM260-209ENST00000556079 SRP68Q9UHB9 627 aaKnown RBP8.57□□□□□ -1.04
TMEM260-209ENST00000556079 CICQ96RK0 1608 aaPredicted RBP8.56□□□□□ -1.04
TMEM260-209ENST00000556079 HSP90AB1P08238 724 aaKnown RBP8.56□□□□□ -1.04
TMEM260-209ENST00000556079 MCM10Q7L590 875 aa8.56□□□□□ -1.04
TMEM260-209ENST00000556079 GPBP1L1Q9HC44 474 aaPredicted RBP8.56□□□□□ -1.04
TMEM260-209ENST00000556079 CD2APQ9Y5K6 639 aa8.56□□□□□ -1.04
TMEM260-209ENST00000556079 KIAA1551Q9HCM1 1747 aa8.56□□□□□ -1.04
TMEM260-209ENST00000556079 PLEKHG2Q9H7P9 1386 aa8.56□□□□□ -1.04
TMEM260-209ENST00000556079 N4BP2Q86UW6 1770 aaPredicted RBP8.56□□□□□ -1.04
TMEM260-209ENST00000556079 PRAMEF22A3QJZ6 481 aa8.55□□□□□ -1.04
TMEM260-209ENST00000556079 POTEIP0CG38 1075 aa8.55□□□□□ -1.04
TMEM260-209ENST00000556079 CRKLP46109 303 aaKnown RBP8.55□□□□□ -1.04
TMEM260-209ENST00000556079 PIP4K2AP48426 406 aaPredicted RBP8.55□□□□□ -1.04
TMEM260-209ENST00000556079 INTS5Q6P9B9 1019 aaKnown RBP8.55□□□□□ -1.04
TMEM260-209ENST00000556079 CFAP53Q96M91 514 aa8.55□□□□□ -1.04
TMEM260-209ENST00000556079 THUMPD2Q9BTF0 503 aaKnown RBP8.55□□□□□ -1.04
TMEM260-209ENST00000556079 ADCY9O60503 1353 aa8.54□□□□□ -1.04
TMEM260-209ENST00000556079 GNAT3A8MTJ3 354 aa8.54□□□□□ -1.04
TMEM260-209ENST00000556079 ARHGEF1Q92888 912 aaKnown RBP8.54□□□□□ -1.04
TMEM260-209ENST00000556079 MIS18AQ9NYP9 233 aa8.54□□□□□ -1.04
TMEM260-209ENST00000556079 HSPA6P17066 643 aa8.53□□□□□ -1.04
TMEM260-209ENST00000556079 SSFA2P28290 1259 aa8.53□□□□□ -1.04
TMEM260-209ENST00000556079 CCDC146Q8IYE0 955 aa8.53□□□□□ -1.04
TMEM260-209ENST00000556079 FLAD1Q8NFF5 587 aa8.53□□□□□ -1.04
TMEM260-209ENST00000556079 ZNF496Q96IT1 587 aaPredicted RBP8.53□□□□□ -1.04
TMEM260-209ENST00000556079 ZBTB1Q9Y2K1 713 aa8.53□□□□□ -1.04
TMEM260-209ENST00000556079 CNTNAP4Q9C0A0 1308 aa8.53□□□□□ -1.04
TMEM260-209ENST00000556079 AFDNP55196 1824 aaKnown RBP8.52□□□□□ -1.04
TMEM260-209ENST00000556079 CEMIPQ8WUJ3 1361 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 RPS6KA4O75676 772 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 MMP10P09238 476 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 CYP19A1P11511 503 aaPredicted RBP8.52□□□□□ -1.05
TMEM260-209ENST00000556079 GYS1P13807 737 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 VASPP50552 380 aaPredicted RBP8.52□□□□□ -1.05
TMEM260-209ENST00000556079 DDR1Q08345 913 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 CCDC184Q52MB2 194 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 GAS2L2Q8NHY3 880 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 PLEKHF1Q96S99 279 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 RRP7AQ9Y3A4 280 aaKnown RBP8.52□□□□□ -1.05
TMEM260-209ENST00000556079 RTCBQ9Y3I0 505 aaKnown RBP8.52□□□□□ -1.05
TMEM260-209ENST00000556079 KDM3BQ7LBC6 1761 aa8.52□□□□□ -1.05
TMEM260-209ENST00000556079 KIF3CO14782 793 aa8.51□□□□□ -1.05
TMEM260-209ENST00000556079 CANXP27824 592 aaKnown RBP8.51□□□□□ -1.05
TMEM260-209ENST00000556079 MS4A3Q96HJ5 214 aa8.51□□□□□ -1.05
TMEM260-209ENST00000556079 CCDC87Q9NVE4 849 aa8.51□□□□□ -1.05
TMEM260-209ENST00000556079 NUDCQ9Y266 331 aa8.51□□□□□ -1.05
TMEM260-209ENST00000556079 KIF13BQ9NQT8 1826 aa8.51□□□□□ -1.05
TMEM260-209ENST00000556079 SOS1Q07889 1333 aaPredicted RBP8.51□□□□□ -1.05
TMEM260-209ENST00000556079 SCN7AQ01118 1682 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 FCHSD2O94868 740 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 A1BGP04217 495 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 NUBP1P53384 320 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 TEFQ10587 303 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 TRAPPC3LQ5T215 181 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 RC3H1Q5TC82 1133 aaKnown RBP8.5□□□□□ -1.05
TMEM260-209ENST00000556079 BCL2L12Q9HB09 334 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 PXDNLA1KZ92 1463 aa8.5□□□□□ -1.05
TMEM260-209ENST00000556079 USP42Q9H9J4 1324 aaKnown RBP8.5□□□□□ -1.05
TMEM260-209ENST00000556079 COL15A1P39059 1388 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 HEG1Q9ULI3 1381 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 BTBD11A6QL63 1104 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 RFC4P35249 363 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 USPL1Q5W0Q7 1092 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 ZNF790Q6PG37 636 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 CCDC24Q8N4L8 307 aa8.49□□□□□ -1.05
TMEM260-209ENST00000556079 ZNF330Q9Y3S2 320 aaPredicted RBP8.49□□□□□ -1.05
TMEM260-209ENST00000556079 MYBBP1AQ9BQG0 1328 aaKnown RBP8.49□□□□□ -1.05
TMEM260-209ENST00000556079 BRCA1P38398 1863 aaKnown RBP8.49□□□□□ -1.05
TMEM260-209ENST00000556079 CARMIL3Q8ND23 1372 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms