RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 ADCY9O60503 1353 aa12.51□□□□□ -0.41
VIPAS39-207ENST00000555854 SCN7AQ01118 1682 aa12.51□□□□□ -0.41
VIPAS39-207ENST00000555854 GNAT3A8MTJ3 354 aa12.5□□□□□ -0.41
VIPAS39-207ENST00000555854 FKBP8Q14318 412 aa12.5□□□□□ -0.41
VIPAS39-207ENST00000555854 CFAP53Q96M91 514 aa12.5□□□□□ -0.41
VIPAS39-207ENST00000555854 COL15A1P39059 1388 aa12.5□□□□□ -0.41
VIPAS39-207ENST00000555854 NRXN2Q9P2S2 1712 aa12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 HEG1Q9ULI3 1381 aa12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 KCNQ3O43525 872 aa12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 RFC4P35249 363 aa12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 NLGN1Q8N2Q7 840 aa12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 ZNF496Q96IT1 587 aaPredicted RBP12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 BCL2L12Q9HB09 334 aa12.49□□□□□ -0.41
VIPAS39-207ENST00000555854 U2AF1L5P0DN76 240 aaPredicted RBP12.48□□□□□ -0.41
VIPAS39-207ENST00000555854 U2AF1Q01081 240 aaKnown RBP eCLIP12.48□□□□□ -0.41
VIPAS39-207ENST00000555854 VSIG10Q8N0Z9 540 aa12.48□□□□□ -0.41
VIPAS39-207ENST00000555854 AFDNP55196 1824 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-207ENST00000555854 DLG5Q8TDM6 1919 aa12.47□□□□□ -0.41
VIPAS39-207ENST00000555854 POLRMTO00411 1230 aaKnown RBP12.47□□□□□ -0.41
VIPAS39-207ENST00000555854 GRIN3BO60391 1043 aa12.47□□□□□ -0.41
VIPAS39-207ENST00000555854 USPL1Q5W0Q7 1092 aa12.47□□□□□ -0.41
VIPAS39-207ENST00000555854 ZNF790Q6PG37 636 aa12.47□□□□□ -0.41
VIPAS39-207ENST00000555854 ATP10DQ9P241 1426 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 BCORQ6W2J9 1755 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 CEP350Q5VT06 3117 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 ABCB7O75027 752 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 TEFQ10587 303 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 MCM10Q7L590 875 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 NUDCQ9Y266 331 aa12.46□□□□□ -0.41
VIPAS39-207ENST00000555854 CARMIL3Q8ND23 1372 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 A0A0G2JLW4 131 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 FCHSD2O94868 740 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 DPEP1P16444 411 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 KCNA3P22001 575 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 TM4SF1P30408 202 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 EIF5P55010 431 aaKnown RBP12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 DCTN1Q14203 1278 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 NARFQ9UHQ1 456 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 KDM3BQ7LBC6 1761 aa12.45□□□□□ -0.42
VIPAS39-207ENST00000555854 ARFGEF1Q9Y6D6 1849 aa12.44□□□□□ -0.42
VIPAS39-207ENST00000555854 PRAMEF22A3QJZ6 481 aa12.44□□□□□ -0.42
VIPAS39-207ENST00000555854 NFIXQ14938 502 aa12.44□□□□□ -0.42
VIPAS39-207ENST00000555854 TTC5Q8N0Z6 440 aa12.44□□□□□ -0.42
VIPAS39-207ENST00000555854 PLEKHF1Q96S99 279 aa12.44□□□□□ -0.42
VIPAS39-207ENST00000555854 PARP3Q9Y6F1 533 aa12.44□□□□□ -0.42
VIPAS39-207ENST00000555854 LAMB4A4D0S4 1761 aa12.43□□□□□ -0.42
VIPAS39-207ENST00000555854 DLEC1Q9Y238 1755 aa12.43□□□□□ -0.42
VIPAS39-207ENST00000555854 CANXP27824 592 aaKnown RBP12.43□□□□□ -0.42
VIPAS39-207ENST00000555854 TGFB2P61812 414 aa12.43□□□□□ -0.42
VIPAS39-207ENST00000555854 COL11A2P13942 1736 aaPredicted RBP12.42□□□□□ -0.42
VIPAS39-207ENST00000555854 ANKRD31Q8N7Z5 1873 aa12.42□□□□□ -0.42
VIPAS39-207ENST00000555854 BTBD11A6QL63 1104 aa12.42□□□□□ -0.42
VIPAS39-207ENST00000555854 FMNL2Q96PY5 1086 aa12.42□□□□□ -0.42
VIPAS39-207ENST00000555854 ZPR1O75312 459 aa12.41□□□□□ -0.42
VIPAS39-207ENST00000555854 PIP4K2AP48426 406 aaPredicted RBP12.41□□□□□ -0.42
VIPAS39-207ENST00000555854 STARD3NLO95772 234 aa12.4□□□□□ -0.42
VIPAS39-207ENST00000555854 A1BGP04217 495 aa12.4□□□□□ -0.42
VIPAS39-207ENST00000555854 CHRNA5P30532 468 aa12.4□□□□□ -0.42
VIPAS39-207ENST00000555854 IL6STP40189 918 aaPredicted RBP12.4□□□□□ -0.42
VIPAS39-207ENST00000555854 BCS1LQ9Y276 419 aa12.4□□□□□ -0.42
VIPAS39-207ENST00000555854 USP16Q9Y5T5 823 aa12.4□□□□□ -0.42
VIPAS39-207ENST00000555854 HTATSF1O43719 755 aaKnown RBP12.39□□□□□ -0.43
VIPAS39-207ENST00000555854 CAMTA2O94983 1202 aa12.39□□□□□ -0.43
VIPAS39-207ENST00000555854 DDX10Q13206 875 aaKnown RBP12.39□□□□□ -0.43
VIPAS39-207ENST00000555854 TBC1D9BQ66K14 1250 aa12.39□□□□□ -0.43
VIPAS39-207ENST00000555854 THUMPD2Q9BTF0 503 aaKnown RBP12.39□□□□□ -0.43
VIPAS39-207ENST00000555854 NBPF26B4DH59 902 aa12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 SERPINB2P05120 415 aa12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 NFE2L2Q16236 605 aa12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 NBPF10Q6P3W6 841 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 NBPF15Q8N660 670 aa12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 RTF1Q92541 710 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 MIS18AQ9NYP9 233 aa12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 TBC1D2BQ9UPU7 963 aa12.38□□□□□ -0.43
VIPAS39-207ENST00000555854 C1QTNF8P60827 252 aa12.37□□□□□ -0.43
VIPAS39-207ENST00000555854 RALBP1Q15311 655 aa12.37□□□□□ -0.43
VIPAS39-207ENST00000555854 TEX13AQ9BXU3 409 aaPredicted RBP12.37□□□□□ -0.43
VIPAS39-207ENST00000555854 ZNF330Q9Y3S2 320 aaPredicted RBP12.37□□□□□ -0.43
VIPAS39-207ENST00000555854 A0A087WZG4 1122 aa12.36□□□□□ -0.43
VIPAS39-207ENST00000555854 GIGYF1O75420 1035 aaPredicted RBP12.36□□□□□ -0.43
VIPAS39-207ENST00000555854 BICDL1Q6ZP65 573 aa12.36□□□□□ -0.43
VIPAS39-207ENST00000555854 MYBBP1AQ9BQG0 1328 aaKnown RBP12.36□□□□□ -0.43
VIPAS39-207ENST00000555854 SNRPA1P09661 255 aaKnown RBP12.35□□□□□ -0.43
VIPAS39-207ENST00000555854 TAF7Q15545 349 aaPredicted RBP12.35□□□□□ -0.43
VIPAS39-207ENST00000555854 PRR5LQ6MZQ0 368 aa12.35□□□□□ -0.43
VIPAS39-207ENST00000555854 CCDC24Q8N4L8 307 aa12.35□□□□□ -0.43
VIPAS39-207ENST00000555854 ZNF526Q8TF50 670 aaPredicted RBP12.35□□□□□ -0.43
VIPAS39-207ENST00000555854 PIM2Q9P1W9 311 aa12.35□□□□□ -0.43
VIPAS39-207ENST00000555854 SBF1O95248 1867 aa12.34□□□□□ -0.43
VIPAS39-207ENST00000555854 PRELPP51888 382 aa12.34□□□□□ -0.43
VIPAS39-207ENST00000555854 DALRD3Q5D0E6 543 aaKnown RBP12.34□□□□□ -0.43
VIPAS39-207ENST00000555854 DZIP3Q86Y13 1208 aaKnown RBP12.34□□□□□ -0.43
VIPAS39-207ENST00000555854 TNRC6CQ9HCJ0 1690 aaKnown RBP12.34□□□□□ -0.43
VIPAS39-207ENST00000555854 KIF3CO14782 793 aa12.33□□□□□ -0.44
VIPAS39-207ENST00000555854 EIF4A1P60842 406 aaKnown RBP12.33□□□□□ -0.44
VIPAS39-207ENST00000555854 RASSF7Q02833 373 aa12.33□□□□□ -0.44
VIPAS39-207ENST00000555854 ARHGAP27Q6ZUM4 889 aa12.33□□□□□ -0.44
VIPAS39-207ENST00000555854 MAPK8IP3Q9UPT6 1336 aa12.33□□□□□ -0.44
VIPAS39-207ENST00000555854 ARFGEF2Q9Y6D5 1785 aa12.33□□□□□ -0.44
VIPAS39-207ENST00000555854 C2CD5Q86YS7 1000 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms