RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 ITGB4P16144 1822 aa13.03□□□□□ -0.32
SRP54-208ENST00000555557 KRT27Q7Z3Y8 459 aa13.02□□□□□ -0.32
SRP54-208ENST00000555557 FTSJ3Q8IY81 847 aaKnown RBP13.02□□□□□ -0.32
SRP54-208ENST00000555557 DZIP1LQ8IYY4 767 aaKnown RBP13.02□□□□□ -0.32
SRP54-208ENST00000555557 KCPQ6ZWJ8 1503 aa13.02□□□□□ -0.33
SRP54-208ENST00000555557 SLC4A9Q96Q91 983 aa13.01□□□□□ -0.33
SRP54-208ENST00000555557 FLIIQ13045 1269 aa13.01□□□□□ -0.33
SRP54-208ENST00000555557 PDIA6Q15084 440 aa13.01□□□□□ -0.33
SRP54-208ENST00000555557 ARHGAP45Q92619 1136 aa13.01□□□□□ -0.33
SRP54-208ENST00000555557 DBF4Q9UBU7 674 aaPredicted RBP13.01□□□□□ -0.33
SRP54-208ENST00000555557 MYL6BP14649 208 aa13□□□□□ -0.33
SRP54-208ENST00000555557 DNAJC10Q8IXB1 793 aa13□□□□□ -0.33
SRP54-208ENST00000555557 TMEM57Q8N5G2 664 aa13□□□□□ -0.33
SRP54-208ENST00000555557 RGS12O14924 1447 aa13□□□□□ -0.33
SRP54-208ENST00000555557 F6X3S4 739 aa13□□□□□ -0.33
SRP54-208ENST00000555557 A1BGP04217 495 aa13□□□□□ -0.33
SRP54-208ENST00000555557 FKBP5Q13451 457 aaPredicted RBP13□□□□□ -0.33
SRP54-208ENST00000555557 CHMP4AQ9BY43 222 aa13□□□□□ -0.33
SRP54-208ENST00000555557 EP400Q96L91 3159 aa12.99□□□□□ -0.33
SRP54-208ENST00000555557 PAPPAQ13219 1627 aa12.99□□□□□ -0.33
SRP54-208ENST00000555557 PTPRCP08575 1304 aa12.99□□□□□ -0.33
SRP54-208ENST00000555557 ITPRIPQ8IWB1 547 aa12.99□□□□□ -0.33
SRP54-208ENST00000555557 API5Q9BZZ5 524 aaKnown RBP12.99□□□□□ -0.33
SRP54-208ENST00000555557 DDX21Q9NR30 783 aaKnown RBP eCLIP12.99□□□□□ -0.33
SRP54-208ENST00000555557 C5P01031 1676 aa12.99□□□□□ -0.33
SRP54-208ENST00000555557 AIMP1Q12904 312 aaKnown RBP12.98□□□□□ -0.33
SRP54-208ENST00000555557 ERICH6BQ5W0A0 696 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 VSIG10Q8N0Z9 540 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 UBR2Q8IWV8 1755 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 PALLDQ8WX93 1383 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 NBPF26B4DH59 902 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 MS4A1P11836 297 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 MVPQ14764 893 aaKnown RBP12.98□□□□□ -0.33
SRP54-208ENST00000555557 NBPF14Q5TI25 921 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 NBPF10Q6P3W6 841 aaKnown RBP12.98□□□□□ -0.33
SRP54-208ENST00000555557 SLC4A10Q6U841 1118 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 FAM196AQ6ZSG2 479 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 NBPF15Q8N660 670 aa12.98□□□□□ -0.33
SRP54-208ENST00000555557 ABCC4O15439 1325 aa12.97□□□□□ -0.33
SRP54-208ENST00000555557 LOC102724428A0A0B4J2F2 783 aa12.97□□□□□ -0.33
SRP54-208ENST00000555557 ATP6V1AP38606 617 aa12.97□□□□□ -0.33
SRP54-208ENST00000555557 KCNQ4P56696 695 aa12.97□□□□□ -0.33
SRP54-208ENST00000555557 SIK1P57059 783 aa12.97□□□□□ -0.33
SRP54-208ENST00000555557 HYPKQ9NX55 129 aa12.97□□□□□ -0.33
SRP54-208ENST00000555557 B4GALNT3Q6L9W6 998 aa12.96□□□□□ -0.33
SRP54-208ENST00000555557 LRP10Q7Z4F1 713 aa12.96□□□□□ -0.33
SRP54-208ENST00000555557 SMARCC1Q92922 1105 aaPredicted RBP12.96□□□□□ -0.33
SRP54-208ENST00000555557 PPP4R2Q9NY27 417 aa12.96□□□□□ -0.33
SRP54-208ENST00000555557 BRWD3Q6RI45 1802 aa12.96□□□□□ -0.33
SRP54-208ENST00000555557 PI4KAP2A4QPH2 592 aa12.96□□□□□ -0.34
SRP54-208ENST00000555557 TRIM37O94972 964 aa12.96□□□□□ -0.34
SRP54-208ENST00000555557 COPS6Q7L5N1 327 aa12.96□□□□□ -0.34
SRP54-208ENST00000555557 PI4KAP1Q8N8J0 262 aa12.96□□□□□ -0.34
SRP54-208ENST00000555557 XAGE3Q8WTP9 111 aa12.96□□□□□ -0.34
SRP54-208ENST00000555557 TEX13AQ9BXU3 409 aaPredicted RBP12.96□□□□□ -0.34
SRP54-208ENST00000555557 STARD3NLO95772 234 aa12.95□□□□□ -0.34
SRP54-208ENST00000555557 CYP19A1P11511 503 aaPredicted RBP12.95□□□□□ -0.34
SRP54-208ENST00000555557 ITPK1Q13572 414 aa12.95□□□□□ -0.34
SRP54-208ENST00000555557 BCL11BQ9C0K0 894 aaPredicted RBP12.95□□□□□ -0.34
SRP54-208ENST00000555557 ZNF330Q9Y3S2 320 aaPredicted RBP12.94□□□□□ -0.34
SRP54-208ENST00000555557 INTS3Q68E01 1043 aaKnown RBP12.93□□□□□ -0.34
SRP54-208ENST00000555557 UPF1Q92900 1129 aaKnown RBP eCLIP12.93□□□□□ -0.34
SRP54-208ENST00000555557 DDX19BQ9UMR2 479 aa12.93□□□□□ -0.34
SRP54-208ENST00000555557 MAP3K2Q9Y2U5 619 aa12.93□□□□□ -0.34
SRP54-208ENST00000555557 ADCY9O60503 1353 aa12.93□□□□□ -0.34
SRP54-208ENST00000555557 ZBTB7BO15156 539 aaPredicted RBP12.92□□□□□ -0.34
SRP54-208ENST00000555557 KSR2Q6VAB6 950 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 DNAAF4Q8WXU2 420 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 ZBTB1Q9Y2K1 713 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 ERBB4Q15303 1308 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 NHSQ6T4R5 1651 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 TTLL7Q6ZT98 887 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 CCDC136Q96JN2 1154 aa12.92□□□□□ -0.34
SRP54-208ENST00000555557 DDX58O95786 925 aaKnown RBP12.91□□□□□ -0.34
SRP54-208ENST00000555557 CRKLP46109 303 aaKnown RBP12.91□□□□□ -0.34
SRP54-208ENST00000555557 INTS5Q6P9B9 1019 aaKnown RBP12.91□□□□□ -0.34
SRP54-208ENST00000555557 ANKRD13DQ6ZTN6 518 aa12.91□□□□□ -0.34
SRP54-208ENST00000555557 RIC3Q7Z5B4 369 aa12.91□□□□□ -0.34
SRP54-208ENST00000555557 LINC00116Q8NCU8 138 aa12.91□□□□□ -0.34
SRP54-208ENST00000555557 ARXQ96QS3 562 aa12.91□□□□□ -0.34
SRP54-208ENST00000555557 BTAF1O14981 1849 aa12.91□□□□□ -0.34
SRP54-208ENST00000555557 SBF2Q86WG5 1849 aa12.91□□□□□ -0.34
SRP54-208ENST00000555557 LAMB4A4D0S4 1761 aa12.9□□□□□ -0.34
SRP54-208ENST00000555557 CCT4P50991 539 aaKnown RBP12.9□□□□□ -0.34
SRP54-208ENST00000555557 ZBTB40Q9NUA8 1239 aa12.9□□□□□ -0.34
SRP54-208ENST00000555557 CCNL1Q9UK58 526 aaPredicted RBP12.9□□□□□ -0.34
SRP54-208ENST00000555557 CACNA1FO60840 1977 aa12.9□□□□□ -0.34
SRP54-208ENST00000555557 BEND3Q5T5X7 828 aa12.9□□□□□ -0.35
SRP54-208ENST00000555557 C1orf115Q9H7X2 142 aa12.9□□□□□ -0.35
SRP54-208ENST00000555557 PCDHB15Q9Y5E8 787 aa12.9□□□□□ -0.35
SRP54-208ENST00000555557 MEIS3Q99687 375 aa12.89□□□□□ -0.35
SRP54-208ENST00000555557 ZBTB3Q9H5J0 574 aa12.89□□□□□ -0.35
SRP54-208ENST00000555557 CCDC87Q9NVE4 849 aa12.89□□□□□ -0.35
SRP54-208ENST00000555557 TJP1Q07157 1748 aa12.89□□□□□ -0.35
SRP54-208ENST00000555557 CWF19L2Q2TBE0 894 aaKnown RBP12.88□□□□□ -0.35
SRP54-208ENST00000555557 SRCIN1Q9C0H9 1055 aa12.88□□□□□ -0.35
SRP54-208ENST00000555557 LRRC4BQ9NT99 713 aa12.88□□□□□ -0.35
SRP54-208ENST00000555557 SMIM5Q71RC9 77 aa12.88□□□□□ -0.35
SRP54-208ENST00000555557 PLBD2Q8NHP8 589 aa12.88□□□□□ -0.35
SRP54-208ENST00000555557 MYD88Q99836 296 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms