RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 DNAJC10Q8IXB1 793 aa15.44■□□□□ 0.06
VPS33B-204ENST00000554660 MRC1P22897 1456 aa15.44■□□□□ 0.06
VPS33B-204ENST00000554660 SOS1Q07889 1333 aaPredicted RBP15.43■□□□□ 0.06
VPS33B-204ENST00000554660 TIAM2Q8IVF5 1701 aa15.43■□□□□ 0.06
VPS33B-204ENST00000554660 AFDNP55196 1824 aaKnown RBP15.43■□□□□ 0.06
VPS33B-204ENST00000554660 COL13A1Q5TAT6 717 aaPredicted RBP15.43■□□□□ 0.06
VPS33B-204ENST00000554660 MORC1Q86VD1 984 aa15.43■□□□□ 0.06
VPS33B-204ENST00000554660 DLEC1Q9Y238 1755 aa15.43■□□□□ 0.06
VPS33B-204ENST00000554660 NRXN2Q9P2S2 1712 aa15.43■□□□□ 0.06
VPS33B-204ENST00000554660 COL15A1P39059 1388 aa15.42■□□□□ 0.06
VPS33B-204ENST00000554660 ZPR1O75312 459 aa15.42■□□□□ 0.06
VPS33B-204ENST00000554660 TM4SF1P30408 202 aa15.42■□□□□ 0.06
VPS33B-204ENST00000554660 JMYQ8N9B5 988 aa15.42■□□□□ 0.06
VPS33B-204ENST00000554660 PCNTO95613 3336 aa15.42■□□□□ 0.06
VPS33B-204ENST00000554660 CARMIL3Q8ND23 1372 aa15.41■□□□□ 0.06
VPS33B-204ENST00000554660 IL13P35225 146 aa15.41■□□□□ 0.06
VPS33B-204ENST00000554660 HSPA5P11021 654 aaKnown RBP15.4■□□□□ 0.06
VPS33B-204ENST00000554660 PRELPP51888 382 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 SLC39A6Q13433 755 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 NFIXQ14938 502 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 SMC1BQ8NDV3 1235 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 SLC52A2Q9HAB3 445 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 LGR6Q9HBX8 967 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 ZBTB1Q9Y2K1 713 aa15.4■□□□□ 0.06
VPS33B-204ENST00000554660 VIRMAQ69YN4 1812 aaKnown RBP15.39■□□□□ 0.05
VPS33B-204ENST00000554660 CAPN15O75808 1086 aa15.39■□□□□ 0.05
VPS33B-204ENST00000554660 CYP19A1P11511 503 aaPredicted RBP15.39■□□□□ 0.05
VPS33B-204ENST00000554660 AKAP4Q5JQC9 854 aa15.39■□□□□ 0.05
VPS33B-204ENST00000554660 EIF4G2P78344 907 aaKnown RBP eCLIP15.38■□□□□ 0.05
VPS33B-204ENST00000554660 BCL2L12Q9HB09 334 aa15.38■□□□□ 0.05
VPS33B-204ENST00000554660 NARFQ9UHQ1 456 aa15.38■□□□□ 0.05
VPS33B-204ENST00000554660 ZC3H4Q9UPT8 1303 aaKnown RBP15.38■□□□□ 0.05
VPS33B-204ENST00000554660 UBR2Q8IWV8 1755 aa15.37■□□□□ 0.05
VPS33B-204ENST00000554660 HMOX1P09601 288 aa15.37■□□□□ 0.05
VPS33B-204ENST00000554660 LMNB1P20700 586 aa15.37■□□□□ 0.05
VPS33B-204ENST00000554660 SCN7AQ01118 1682 aa15.36■□□□□ 0.05
VPS33B-204ENST00000554660 RNMTO43148 476 aaKnown RBP15.36■□□□□ 0.05
VPS33B-204ENST00000554660 SERPINB2P05120 415 aa15.36■□□□□ 0.05
VPS33B-204ENST00000554660 C2CD5Q86YS7 1000 aa15.36■□□□□ 0.05
VPS33B-204ENST00000554660 COL11A2P13942 1736 aaPredicted RBP15.36■□□□□ 0.05
VPS33B-204ENST00000554660 GLTPD2A6NH11 291 aa15.35■□□□□ 0.05
VPS33B-204ENST00000554660 NFKBIEO00221 500 aa15.35■□□□□ 0.05
VPS33B-204ENST00000554660 BICDL1Q6ZP65 573 aa15.35■□□□□ 0.05
VPS33B-204ENST00000554660 ANKRD31Q8N7Z5 1873 aa15.35■□□□□ 0.05
VPS33B-204ENST00000554660 ANP32CO43423 234 aa15.34■□□□□ 0.05
VPS33B-204ENST00000554660 CANXP27824 592 aaKnown RBP15.34■□□□□ 0.05
VPS33B-204ENST00000554660 TNS4Q8IZW8 715 aa15.34■□□□□ 0.05
VPS33B-204ENST00000554660 TTLL6Q8N841 843 aa15.34■□□□□ 0.05
VPS33B-204ENST00000554660 KNSTRNQ9Y448 316 aa15.34■□□□□ 0.05
VPS33B-204ENST00000554660 SUPT16HQ9Y5B9 1047 aaKnown RBP15.34■□□□□ 0.05
VPS33B-204ENST00000554660 VEGFAP15692 232 aaPredicted RBP15.33■□□□□ 0.04
VPS33B-204ENST00000554660 MTHFSDQ2M296 383 aaKnown RBP15.33■□□□□ 0.04
VPS33B-204ENST00000554660 CCDC88AQ3V6T2 1871 aa15.33■□□□□ 0.04
VPS33B-204ENST00000554660 HSPA1AP0DMV8 641 aaKnown RBP15.32■□□□□ 0.04
VPS33B-204ENST00000554660 HSPA1BP0DMV9 641 aaKnown RBP15.32■□□□□ 0.04
VPS33B-204ENST00000554660 DDX10Q13206 875 aaKnown RBP15.32■□□□□ 0.04
VPS33B-204ENST00000554660 ZNF219Q9P2Y4 722 aaPredicted RBP15.32■□□□□ 0.04
VPS33B-204ENST00000554660 H0YIN7 160 aa15.31■□□□□ 0.04
VPS33B-204ENST00000554660 AMER1Q5JTC6 1135 aaPredicted RBP15.31■□□□□ 0.04
VPS33B-204ENST00000554660 CCDC24Q8N4L8 307 aa15.31■□□□□ 0.04
VPS33B-204ENST00000554660 POTECB2RU33 542 aa15.3■□□□□ 0.04
VPS33B-204ENST00000554660 TBC1D9BQ66K14 1250 aa15.3■□□□□ 0.04
VPS33B-204ENST00000554660 VSIG10Q8N0Z9 540 aa15.3■□□□□ 0.04
VPS33B-204ENST00000554660 ZNF330Q9Y3S2 320 aaPredicted RBP15.3■□□□□ 0.04
VPS33B-204ENST00000554660 EIF5P55010 431 aaKnown RBP15.29■□□□□ 0.04
VPS33B-204ENST00000554660 TTC5Q8N0Z6 440 aa15.29■□□□□ 0.04
VPS33B-204ENST00000554660 ZNF622Q969S3 477 aaKnown RBP eCLIP15.29■□□□□ 0.04
VPS33B-204ENST00000554660 C21orf2O43822 256 aa15.28■□□□□ 0.04
VPS33B-204ENST00000554660 CACNA1SQ13698 1873 aa15.28■□□□□ 0.04
VPS33B-204ENST00000554660 FER1L6Q2WGJ9 1857 aa15.28■□□□□ 0.04
VPS33B-204ENST00000554660 SIPA1L3O60292 1781 aaPredicted RBP15.27■□□□□ 0.04
VPS33B-204ENST00000554660 ERFEQ4G0M1 354 aa15.27■□□□□ 0.04
VPS33B-204ENST00000554660 PRR5LQ6MZQ0 368 aa15.27■□□□□ 0.04
VPS33B-204ENST00000554660 ZNF496Q96IT1 587 aaPredicted RBP15.27■□□□□ 0.04
VPS33B-204ENST00000554660 TBC1D2BQ9UPU7 963 aa15.27■□□□□ 0.04
VPS33B-204ENST00000554660 COL3A1P02461 1466 aaPredicted RBP15.27■□□□□ 0.03
VPS33B-204ENST00000554660 BCORQ6W2J9 1755 aa15.26■□□□□ 0.03
VPS33B-204ENST00000554660 HEG1Q9ULI3 1381 aa15.26■□□□□ 0.03
VPS33B-204ENST00000554660 DICER1Q9UPY3 1922 aaKnown RBP15.26■□□□□ 0.03
VPS33B-204ENST00000554660 DIAPH1O60610 1272 aaKnown RBP15.26■□□□□ 0.03
VPS33B-204ENST00000554660 STARD3NLO95772 234 aa15.26■□□□□ 0.03
VPS33B-204ENST00000554660 KIF7Q2M1P5 1343 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 A0A087WZG4 1122 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 POTEIP0CG38 1075 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 POTEJP0CG39 1038 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 PDE6BP35913 854 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 DPY19L2Q6NUT2 758 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 BRIP1Q9BX63 1249 aa15.25■□□□□ 0.03
VPS33B-204ENST00000554660 MKRN1Q9UHC7 482 aaKnown RBP15.25■□□□□ 0.03
VPS33B-204ENST00000554660 ARFGEF2Q9Y6D5 1785 aa15.24■□□□□ 0.03
VPS33B-204ENST00000554660 TEFQ10587 303 aa15.24■□□□□ 0.03
VPS33B-204ENST00000554660 CC2D1BQ5T0F9 858 aaKnown RBP15.24■□□□□ 0.03
VPS33B-204ENST00000554660 ZNF790Q6PG37 636 aa15.24■□□□□ 0.03
VPS33B-204ENST00000554660 CNBD1Q8NA66 436 aa15.24■□□□□ 0.03
VPS33B-204ENST00000554660 TAOK3Q9H2K8 898 aa15.24■□□□□ 0.03
VPS33B-204ENST00000554660 SLX4Q8IY92 1834 aa15.24■□□□□ 0.03
VPS33B-204ENST00000554660 NPHP1O15259 732 aa15.23■□□□□ 0.03
VPS33B-204ENST00000554660 DDNO94850 711 aaPredicted RBP15.23■□□□□ 0.03
VPS33B-204ENST00000554660 IL17REQ8NFR9 667 aa15.23■□□□□ 0.03
VPS33B-204ENST00000554660 LTBP3Q9NS15 1303 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms