RNA–Protein interactions for RNA: ENST00000554508.5

ACTN1-213, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-213ENST00000554508 PLEKHF1Q96S99 279 aa11.57□□□□□ -0.56
ACTN1-213ENST00000554508 SRP68Q9UHB9 627 aaKnown RBP11.57□□□□□ -0.56
ACTN1-213ENST00000554508 NARFQ9UHQ1 456 aa11.57□□□□□ -0.56
ACTN1-213ENST00000554508 COL15A1P39059 1388 aa11.56□□□□□ -0.56
ACTN1-213ENST00000554508 A0A087WZG4 1122 aa11.56□□□□□ -0.56
ACTN1-213ENST00000554508 YBX3P16989 372 aaKnown RBP eCLIP11.56□□□□□ -0.563e-6■■■■□ 24.3
ACTN1-213ENST00000554508 FKBP8Q14318 412 aa11.56□□□□□ -0.56
ACTN1-213ENST00000554508 TAF7Q15545 349 aaPredicted RBP11.56□□□□□ -0.56
ACTN1-213ENST00000554508 MCM10Q7L590 875 aa11.56□□□□□ -0.56
ACTN1-213ENST00000554508 ZBTB1Q9Y2K1 713 aa11.56□□□□□ -0.56
ACTN1-213ENST00000554508 N4BP2Q86UW6 1770 aaPredicted RBP11.56□□□□□ -0.56
ACTN1-213ENST00000554508 MYBBP1AQ9BQG0 1328 aaKnown RBP11.56□□□□□ -0.56
ACTN1-213ENST00000554508 CANXP27824 592 aaKnown RBP11.55□□□□□ -0.56
ACTN1-213ENST00000554508 TM4SF1P30408 202 aa11.55□□□□□ -0.56
ACTN1-213ENST00000554508 EIF5P55010 431 aaKnown RBP11.55□□□□□ -0.56
ACTN1-213ENST00000554508 NFE2L2Q16236 605 aa11.55□□□□□ -0.56
ACTN1-213ENST00000554508 USPL1Q5W0Q7 1092 aa11.55□□□□□ -0.56
ACTN1-213ENST00000554508 MAPK8IP3Q9UPT6 1336 aa11.55□□□□□ -0.56
ACTN1-213ENST00000554508 GOLGB1Q14789 3259 aaKnown RBP11.55□□□□□ -0.56
ACTN1-213ENST00000554508 C10orf71Q711Q0 1435 aa11.54□□□□□ -0.56
ACTN1-213ENST00000554508 AFDNP55196 1824 aaKnown RBP11.54□□□□□ -0.56
ACTN1-213ENST00000554508 KCNQ3O43525 872 aa11.54□□□□□ -0.56
ACTN1-213ENST00000554508 IL6STP40189 918 aaPredicted RBP11.54□□□□□ -0.56
ACTN1-213ENST00000554508 DCTN1Q14203 1278 aa11.54□□□□□ -0.56
ACTN1-213ENST00000554508 NPM2Q86SE8 214 aaKnown RBP11.54□□□□□ -0.56
ACTN1-213ENST00000554508 KIAA1551Q9HCM1 1747 aa11.54□□□□□ -0.56
ACTN1-213ENST00000554508 BRCA1P38398 1863 aaKnown RBP11.53□□□□□ -0.56
ACTN1-213ENST00000554508 SNRPA1P09661 255 aaKnown RBP11.53□□□□□ -0.56
ACTN1-213ENST00000554508 PNISRQ8TF01 805 aaKnown RBP11.53□□□□□ -0.56
ACTN1-213ENST00000554508 ZNF316A6NFI3 1004 aaPredicted RBP11.52□□□□□ -0.57
ACTN1-213ENST00000554508 POLRMTO00411 1230 aaKnown RBP11.52□□□□□ -0.57
ACTN1-213ENST00000554508 DDR1Q08345 913 aa11.52□□□□□ -0.57
ACTN1-213ENST00000554508 ZNF784Q8NCA9 323 aaPredicted RBP11.52□□□□□ -0.57
ACTN1-213ENST00000554508 NRXN2Q9P2S2 1712 aa11.52□□□□□ -0.57
ACTN1-213ENST00000554508 KDM3BQ7LBC6 1761 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 PXDNLA1KZ92 1463 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 ARFGEF1Q9Y6D6 1849 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 A0A0G2JLW4 131 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 A1BGP04217 495 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 PRKRIP1Q9H875 184 aaPredicted RBP11.51□□□□□ -0.57
ACTN1-213ENST00000554508 BCL2L12Q9HB09 334 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 USP16Q9Y5T5 823 aa11.51□□□□□ -0.57
ACTN1-213ENST00000554508 DPEP1P16444 411 aa11.5□□□□□ -0.57
ACTN1-213ENST00000554508 NFIXQ14938 502 aa11.5□□□□□ -0.57
ACTN1-213ENST00000554508 PIM2Q9P1W9 311 aa11.5□□□□□ -0.57
ACTN1-213ENST00000554508 ZNF330Q9Y3S2 320 aaPredicted RBP11.5□□□□□ -0.57
ACTN1-213ENST00000554508 SERPINB2P05120 415 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 KCNA3P22001 575 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 RIPK4P57078 832 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 LMOD3Q0VAK6 560 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 WDR43Q15061 677 aaKnown RBP eCLIP11.49□□□□□ -0.57
ACTN1-213ENST00000554508 MIS18AQ9NYP9 233 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 WWC3Q9ULE0 1092 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 TBC1D2BQ9UPU7 963 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 BCS1LQ9Y276 419 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 SCN7AQ01118 1682 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 LAMB4A4D0S4 1761 aa11.49□□□□□ -0.57
ACTN1-213ENST00000554508 PRAMEF22A3QJZ6 481 aa11.48□□□□□ -0.57
ACTN1-213ENST00000554508 TMPOP42166 694 aaKnown RBP11.48□□□□□ -0.57
ACTN1-213ENST00000554508 CLEC4GQ6UXB4 293 aa11.48□□□□□ -0.57
ACTN1-213ENST00000554508 DZIP3Q86Y13 1208 aaKnown RBP11.48□□□□□ -0.57
ACTN1-213ENST00000554508 BABAM1Q9NWV8 329 aa11.48□□□□□ -0.57
ACTN1-213ENST00000554508 BCORQ6W2J9 1755 aa11.48□□□□□ -0.57
ACTN1-213ENST00000554508 RGL2O15211 777 aa11.47□□□□□ -0.57
ACTN1-213ENST00000554508 CAMTA2O94983 1202 aa11.47□□□□□ -0.57
ACTN1-213ENST00000554508 EIF4A1P60842 406 aaKnown RBP11.47□□□□□ -0.57
ACTN1-213ENST00000554508 DALRD3Q5D0E6 543 aaKnown RBP11.47□□□□□ -0.57
ACTN1-213ENST00000554508 TBC1D9BQ66K14 1250 aa11.47□□□□□ -0.57
ACTN1-213ENST00000554508 RUNDC1Q96C34 613 aa11.47□□□□□ -0.57
ACTN1-213ENST00000554508 DLEC1Q9Y238 1755 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 NBPF26B4DH59 902 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 GIGYF1O75420 1035 aaPredicted RBP11.46□□□□□ -0.57
ACTN1-213ENST00000554508 NBPF10Q6P3W6 841 aaKnown RBP11.46□□□□□ -0.57
ACTN1-213ENST00000554508 BICDL1Q6ZP65 573 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 NBPF15Q8N660 670 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 SETDB2Q96T68 719 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 THUMPD2Q9BTF0 503 aaKnown RBP11.46□□□□□ -0.57
ACTN1-213ENST00000554508 ADAMTS8Q9UP79 889 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 PDZRN3Q9UPQ7 1066 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 ZNF652Q9Y2D9 606 aa11.46□□□□□ -0.57
ACTN1-213ENST00000554508 CARMIL3Q8ND23 1372 aa11.45□□□□□ -0.58
ACTN1-213ENST00000554508 CHRNA5P30532 468 aa11.45□□□□□ -0.58
ACTN1-213ENST00000554508 PIP4K2AP48426 406 aaPredicted RBP11.45□□□□□ -0.58
ACTN1-213ENST00000554508 ARHGAP27Q6ZUM4 889 aa11.45□□□□□ -0.58
ACTN1-213ENST00000554508 TSPYL4Q9UJ04 414 aa11.45□□□□□ -0.58
ACTN1-213ENST00000554508 SBF1O95248 1867 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 ANKRD31Q8N7Z5 1873 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 NUP98P52948 1817 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 H0YIN7 160 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 PDE6BP35913 854 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 CCDC146Q8IYE0 955 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 BRIP1Q9BX63 1249 aa11.44□□□□□ -0.58
ACTN1-213ENST00000554508 ADCY9O60503 1353 aa11.43□□□□□ -0.58
ACTN1-213ENST00000554508 ERBB4Q15303 1308 aa11.43□□□□□ -0.58
ACTN1-213ENST00000554508 NEUROD2Q15784 382 aa11.43□□□□□ -0.58
ACTN1-213ENST00000554508 PRR5LQ6MZQ0 368 aa11.43□□□□□ -0.58
ACTN1-213ENST00000554508 C2CD5Q86YS7 1000 aa11.43□□□□□ -0.58
ACTN1-213ENST00000554508 RRP7AQ9Y3A4 280 aaKnown RBP11.43□□□□□ -0.58
ACTN1-213ENST00000554508 ATP10DQ9P241 1426 aa11.43□□□□□ -0.58
ACTN1-213ENST00000554508 CCDC88AQ3V6T2 1871 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms