RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 KTN1Q86UP2 1357 aaKnown RBP3.32□□□□□ -1.88
PRPF39-207ENST00000554439 RBM47A0AV96 593 aaKnown RBP3.32□□□□□ -1.88
PRPF39-207ENST00000554439 FOXC1Q12948 553 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 RGL3Q3MIN7 710 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 RSPH4AQ5TD94 716 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 DESI1Q6ICB0 168 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 FAM174AQ8TBP5 190 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 SCARF2Q96GP6 870 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-207ENST00000554439 ADAMTS8Q9UP79 889 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 KDM2BQ8NHM5 1336 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 PARD3Q8TEW0 1356 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 E9PCH4 1651 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L3A6NCW0 530 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L4A6NCW7 530 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 ADH1BP00325 375 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 SSFA2P28290 1259 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 NR1H3Q13133 447 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 PDE3BQ13370 1112 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 CRTC2Q53ET0 693 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L2Q6R6M4 530 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L1Q7RTZ2 530 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 NOVA2Q9UNW9 492 aaKnown RBP3.32□□□□□ -1.88
PRPF39-207ENST00000554439 UHRF1BP1Q6BDS2 1440 aa3.32□□□□□ -1.88
PRPF39-207ENST00000554439 NUP153P49790 1475 aaKnown RBP3.32□□□□□ -1.88
PRPF39-207ENST00000554439 TTC24A2A3L6 582 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-207ENST00000554439 K7ELQ4 463 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-207ENST00000554439 CFHP08603 1231 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 ATP6V1AP38606 617 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 COPS2P61201 443 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 LCE1DQ5T752 114 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 NFATC2IPQ8NCF5 419 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 PANK3Q9H999 370 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 GOLGA2P5Q9HBQ8 144 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 KIAA1522Q9P206 1035 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-207ENST00000554439 PCDHB3Q9Y5E6 796 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 DISP3Q9P2K9 1392 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 ANKRD50Q9ULJ7 1429 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 F12P00748 615 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-207ENST00000554439 LYPD8Q6UX82 237 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 RETREG3Q86VR2 466 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 PLEKHM2Q8IWE5 1019 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 PLEKHH1Q9ULM0 1364 aa3.31□□□□□ -1.88
PRPF39-207ENST00000554439 PBRM1Q86U86 1689 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 FAM196BA6NMK8 535 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 PTK7Q13308 1070 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 MORN1Q5T089 497 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 DUSP27Q5VZP5 1158 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 UBE2Q2Q8WVN8 375 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 OCSTAMPQ9BR26 566 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 POGKQ9P215 609 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 GPATCH8Q9UKJ3 1502 aaKnown RBP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 TARBP1Q13395 1621 aaKnown RBP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 BLMP54132 1417 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 ADGBQ8N7X0 1667 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 DISP1Q96F81 1524 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 ZNF608Q9ULD9 1512 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 ZBBXA8MT70 800 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L5A8MUK1 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L15C9J2P7 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L10C9JJH3 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L13C9JLJ4 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L12C9JPN9 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L11C9JVI0 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L21D6R901 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L18D6R9N7 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L22D6RA61 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L17D6RBQ6 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L19D6RCP7 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L20D6RJB6 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 SCNN1AP37088 669 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 USP17L24Q0WX57 530 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 GRIPAP1Q4V328 841 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 CENPQQ7L2Z9 268 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 DEPDC4Q8N2C3 294 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 SLC27A5Q9Y2P5 690 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 ANKRD30AQ9BXX3 1397 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 BCAR3O75815 825 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 IGHDP01880 384 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 HNRNPMP52272 730 aaKnown RBP eCLIP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 CCDC146Q8IYE0 955 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 TESK2Q96S53 571 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 SLKQ9H2G2 1235 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-207ENST00000554439 FKBPLQ9UIM3 349 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 ERBB4Q15303 1308 aa3.3□□□□□ -1.88
PRPF39-207ENST00000554439 PLB1Q6P1J6 1458 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 ZMYM4Q5VZL5 1548 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 RAPGEF6Q8TEU7 1601 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 CROCC2H7BZ55 1655 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 PUS10Q3MIT2 529 aaKnown RBP3.29□□□□□ -1.88
PRPF39-207ENST00000554439 RNF19BQ6ZMZ0 732 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 PHTF2Q8N3S3 785 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 PNMA1Q8ND90 353 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 RRAGDQ9NQL2 400 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-207ENST00000554439 USP19O94966 1318 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 TROQ12816 1431 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-207ENST00000554439 PRAG1Q86YV5 1406 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 ADGRL2O95490 1459 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 ADAMTS12P58397 1594 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 KIAA0556O60303 1618 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 SOWAHDA6NJG2 315 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms