RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 RAB15P59190 212 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 NEUROD1Q13562 356 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 TSGA10IPQ3SY00 556 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 TRAF7Q6Q0C0 670 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 PHTF2Q8N3S3 785 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 ITPKCQ96DU7 683 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 ALG2Q9H553 416 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 ZFAND3Q9H8U3 227 aa8.53□□□□□ -1.04
VPS33B-203ENST00000554264 NEURL4Q96JN8 1562 aa8.52□□□□□ -1.04
VPS33B-203ENST00000554264 PZPP20742 1482 aa8.52□□□□□ -1.05
VPS33B-203ENST00000554264 SMCPP49901 116 aaPredicted RBP8.52□□□□□ -1.05
VPS33B-203ENST00000554264 WDR4P57081 412 aaKnown RBP8.52□□□□□ -1.05
VPS33B-203ENST00000554264 EIF4G2P78344 907 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS33B-203ENST00000554264 NBPF20Q3BBV1 942 aa8.52□□□□□ -1.05
VPS33B-203ENST00000554264 PPP1R26Q5T8A7 1209 aaPredicted RBP8.52□□□□□ -1.05
VPS33B-203ENST00000554264 THEMISQ8N1K5 641 aaPredicted RBP8.52□□□□□ -1.05
VPS33B-203ENST00000554264 CRIPAKQ8N1N5 446 aa8.52□□□□□ -1.05
VPS33B-203ENST00000554264 TMPRSS4Q9NRS4 437 aa8.52□□□□□ -1.05
VPS33B-203ENST00000554264 ZNF330Q9Y3S2 320 aaPredicted RBP8.52□□□□□ -1.05
VPS33B-203ENST00000554264 POLR1AO95602 1720 aaPredicted RBP8.51□□□□□ -1.05
VPS33B-203ENST00000554264 NLRP1Q9C000 1473 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 MTUS2Q5JR59 1369 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 KDM5DQ9BY66 1539 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 ERVH48-1M5A8F1 160 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 CCDC116Q8IYX3 515 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 ZMYND15Q9H091 742 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 NPHP4O75161 1426 aaPredicted RBP8.51□□□□□ -1.05
VPS33B-203ENST00000554264 MED14O60244 1454 aa8.51□□□□□ -1.05
VPS33B-203ENST00000554264 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS33B-203ENST00000554264 KIF3BO15066 747 aa8.5□□□□□ -1.05
VPS33B-203ENST00000554264 TRAK2O60296 914 aa8.5□□□□□ -1.05
VPS33B-203ENST00000554264 ZIC2O95409 532 aaPredicted RBP8.5□□□□□ -1.05
VPS33B-203ENST00000554264 MCCD1P59942 119 aaPredicted RBP8.5□□□□□ -1.05
VPS33B-203ENST00000554264 VWDEQ8N2E2 1590 aa8.5□□□□□ -1.05
VPS33B-203ENST00000554264 MIA2Q96PC5 1412 aa8.5□□□□□ -1.05
VPS33B-203ENST00000554264 MBD5Q9P267 1494 aa8.5□□□□□ -1.05
VPS33B-203ENST00000554264 WASHC2CQ9Y4E1 1318 aa8.5□□□□□ -1.05
VPS33B-203ENST00000554264 UGGT1Q9NYU2 1555 aa8.49□□□□□ -1.05
VPS33B-203ENST00000554264 PIK3CDO00329 1044 aa8.49□□□□□ -1.05
VPS33B-203ENST00000554264 AXIN1O15169 862 aa8.49□□□□□ -1.05
VPS33B-203ENST00000554264 CTC1Q2NKJ3 1217 aa8.49□□□□□ -1.05
VPS33B-203ENST00000554264 HDGFL1Q5TGJ6 251 aa8.49□□□□□ -1.05
VPS33B-203ENST00000554264 CCDC85AQ96PX6 553 aaPredicted RBP8.49□□□□□ -1.05
VPS33B-203ENST00000554264 DEPDC5O75140 1603 aa8.48□□□□□ -1.05
VPS33B-203ENST00000554264 CAPN5O15484 640 aaPredicted RBP8.48□□□□□ -1.05
VPS33B-203ENST00000554264 LILRA1O75019 489 aa8.48□□□□□ -1.05
VPS33B-203ENST00000554264 CBLBQ13191 982 aa8.48□□□□□ -1.05
VPS33B-203ENST00000554264 SEMA3FQ13275 785 aa8.48□□□□□ -1.05
VPS33B-203ENST00000554264 SEPT12Q8IYM1 358 aa8.48□□□□□ -1.05
VPS33B-203ENST00000554264 ZNF644Q9H582 1327 aaPredicted RBP8.48□□□□□ -1.05
VPS33B-203ENST00000554264 ALKQ9UM73 1620 aa8.47□□□□□ -1.05
VPS33B-203ENST00000554264 CCDC141Q6ZP82 1450 aa8.47□□□□□ -1.05
VPS33B-203ENST00000554264 ADD1P35611 737 aaKnown RBP8.47□□□□□ -1.05
VPS33B-203ENST00000554264 WWC1Q8IX03 1113 aa8.47□□□□□ -1.05
VPS33B-203ENST00000554264 ZNF784Q8NCA9 323 aaPredicted RBP8.47□□□□□ -1.05
VPS33B-203ENST00000554264 CDCA7Q9BWT1 371 aaPredicted RBP8.47□□□□□ -1.05
VPS33B-203ENST00000554264 CHIC2Q9UKJ5 165 aa8.47□□□□□ -1.05
VPS33B-203ENST00000554264 EMILIN1Q9Y6C2 1016 aa8.47□□□□□ -1.05
VPS33B-203ENST00000554264 TIAM1Q13009 1591 aa8.47□□□□□ -1.05
VPS33B-203ENST00000554264 EHBP1L1Q8N3D4 1523 aa8.46□□□□□ -1.05
VPS33B-203ENST00000554264 LRRC7Q96NW7 1537 aa8.46□□□□□ -1.05
VPS33B-203ENST00000554264 POTECB2RU33 542 aa8.46□□□□□ -1.06
VPS33B-203ENST00000554264 SOX11P35716 441 aa8.46□□□□□ -1.06
VPS33B-203ENST00000554264 SCTRP47872 440 aa8.46□□□□□ -1.06
VPS33B-203ENST00000554264 TRIM46Q7Z4K8 759 aa8.46□□□□□ -1.06
VPS33B-203ENST00000554264 SYNMO15061 1565 aa8.46□□□□□ -1.06
VPS33B-203ENST00000554264 RNF17Q9BXT8 1623 aaKnown RBP8.46□□□□□ -1.06
VPS33B-203ENST00000554264 IQGAP1P46940 1657 aa8.46□□□□□ -1.06
VPS33B-203ENST00000554264 MAP3K1Q13233 1512 aa8.45□□□□□ -1.06
VPS33B-203ENST00000554264 BMP1P13497 986 aa8.45□□□□□ -1.06
VPS33B-203ENST00000554264 DHX9Q08211 1270 aaKnown RBP8.45□□□□□ -1.06
VPS33B-203ENST00000554264 UCN2Q96RP3 112 aa8.45□□□□□ -1.06
VPS33B-203ENST00000554264 TSPY4P0CV99 314 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 TSPY10P0CW01 314 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 RNF20Q5VTR2 975 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 KDF1Q8NAX2 398 aaPredicted RBP8.44□□□□□ -1.06
VPS33B-203ENST00000554264 ZNF592Q92610 1267 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 GLMNQ92990 594 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 ATP13A2Q9NQ11 1180 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 CYLDQ9NQC7 956 aa8.44□□□□□ -1.06
VPS33B-203ENST00000554264 SLFNL1Q499Z3 407 aa8.43□□□□□ -1.06
VPS33B-203ENST00000554264 Q6ZVU0 165 aa8.43□□□□□ -1.06
VPS33B-203ENST00000554264 C14orf37Q86TY3 774 aa8.43□□□□□ -1.06
VPS33B-203ENST00000554264 RNF135Q8IUD6 432 aa8.43□□□□□ -1.06
VPS33B-203ENST00000554264 PGPEP1Q9NXJ5 209 aa8.43□□□□□ -1.06
VPS33B-203ENST00000554264 PCDHB11Q9Y5F2 797 aa8.43□□□□□ -1.06
VPS33B-203ENST00000554264 RRBP1Q9P2E9 1410 aaKnown RBP8.43□□□□□ -1.06
VPS33B-203ENST00000554264 MEIOBQ8N635 442 aa8.42□□□□□ -1.06
VPS33B-203ENST00000554264 AGBL1Q96MI9 1066 aa8.42□□□□□ -1.06
VPS33B-203ENST00000554264 RGS17Q9UGC6 210 aaPredicted RBP8.42□□□□□ -1.06
VPS33B-203ENST00000554264 TIMELESSQ9UNS1 1208 aa8.42□□□□□ -1.06
VPS33B-203ENST00000554264 CAMSAP2Q08AD1 1489 aa8.42□□□□□ -1.06
VPS33B-203ENST00000554264 ZC3H13Q5T200 1668 aaKnown RBP8.41□□□□□ -1.06
VPS33B-203ENST00000554264 ERVK-7P63135 1459 aa8.41□□□□□ -1.06
VPS33B-203ENST00000554264 SCAF11Q99590 1463 aaKnown RBP8.41□□□□□ -1.06
VPS33B-203ENST00000554264 ERVK-9P63128 1117 aa8.41□□□□□ -1.06
VPS33B-203ENST00000554264 MRPL14Q6P1L8 145 aaKnown RBP8.41□□□□□ -1.06
VPS33B-203ENST00000554264 TBC1D9Q6ZT07 1266 aa8.41□□□□□ -1.06
VPS33B-203ENST00000554264 GMPR2Q9P2T1 348 aaKnown RBP8.41□□□□□ -1.06
VPS33B-203ENST00000554264 ARHGEF5Q12774 1597 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms