RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 COL15A1P39059 1388 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 KCPQ6ZWJ8 1503 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 HSPA6P17066 643 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 ZNF790Q6PG37 636 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 IL17REQ8NFR9 667 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 ZBTB1Q9Y2K1 713 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 ADAMTS7Q9UKP4 1686 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 VIRMAQ69YN4 1812 aaKnown RBP17.03■□□□□ 0.32
LINC00643-202ENST00000553426 KIF13BQ9NQT8 1826 aa17.03■□□□□ 0.32
LINC00643-202ENST00000553426 A0A087WZG4 1122 aa17.02■□□□□ 0.32
LINC00643-202ENST00000553426 CANXP27824 592 aaKnown RBP17.02■□□□□ 0.32
LINC00643-202ENST00000553426 ARHGAP27Q6ZUM4 889 aa17.02■□□□□ 0.32
LINC00643-202ENST00000553426 RTF1Q92541 710 aaKnown RBP17.02■□□□□ 0.32
LINC00643-202ENST00000553426 RSPH6AQ9H0K4 717 aa17.02■□□□□ 0.32
LINC00643-202ENST00000553426 PIM2Q9P1W9 311 aa17.02■□□□□ 0.32
LINC00643-202ENST00000553426 NEFMP07197 916 aa17.01■□□□□ 0.31
LINC00643-202ENST00000553426 TM4SF1P30408 202 aa17.01■□□□□ 0.31
LINC00643-202ENST00000553426 DDR1Q08345 913 aa17.01■□□□□ 0.31
LINC00643-202ENST00000553426 ZNF496Q96IT1 587 aaPredicted RBP17.01■□□□□ 0.31
LINC00643-202ENST00000553426 PHACTR3Q96KR7 559 aa17.01■□□□□ 0.31
LINC00643-202ENST00000553426 FMNL2Q96PY5 1086 aa17.01■□□□□ 0.31
LINC00643-202ENST00000553426 BTBD11A6QL63 1104 aa17■□□□□ 0.31
LINC00643-202ENST00000553426 POLRMTO00411 1230 aaKnown RBP17■□□□□ 0.31
LINC00643-202ENST00000553426 DALRD3Q5D0E6 543 aaKnown RBP17■□□□□ 0.31
LINC00643-202ENST00000553426 HEG1Q9ULI3 1381 aa17■□□□□ 0.31
LINC00643-202ENST00000553426 N4BP2Q86UW6 1770 aaPredicted RBP17■□□□□ 0.31
LINC00643-202ENST00000553426 NFIXQ14938 502 aa16.98■□□□□ 0.31
LINC00643-202ENST00000553426 ZNF330Q9Y3S2 320 aaPredicted RBP16.98■□□□□ 0.31
LINC00643-202ENST00000553426 CEMIPQ8WUJ3 1361 aa16.98■□□□□ 0.31
LINC00643-202ENST00000553426 KCNA3P22001 575 aa16.97■□□□□ 0.31
LINC00643-202ENST00000553426 EIF5P55010 431 aaKnown RBP16.97■□□□□ 0.31
LINC00643-202ENST00000553426 UBR2Q8IWV8 1755 aa16.97■□□□□ 0.31
LINC00643-202ENST00000553426 KIAA1551Q9HCM1 1747 aa16.96■□□□□ 0.31
LINC00643-202ENST00000553426 KIF3CO14782 793 aa16.96■□□□□ 0.31
LINC00643-202ENST00000553426 SERPINB2P05120 415 aa16.96■□□□□ 0.31
LINC00643-202ENST00000553426 IL6STP40189 918 aaPredicted RBP16.96■□□□□ 0.31
LINC00643-202ENST00000553426 HTATSF1O43719 755 aaKnown RBP16.95■□□□□ 0.3
LINC00643-202ENST00000553426 CHRNA5P30532 468 aa16.95■□□□□ 0.3
LINC00643-202ENST00000553426 BICDL1Q6ZP65 573 aa16.94■□□□□ 0.3
LINC00643-202ENST00000553426 BCL2L12Q9HB09 334 aa16.94■□□□□ 0.3
LINC00643-202ENST00000553426 MCM10Q7L590 875 aa16.93■□□□□ 0.3
LINC00643-202ENST00000553426 PNNQ9H307 717 aaKnown RBP16.93■□□□□ 0.3
LINC00643-202ENST00000553426 TBC1D2BQ9UPU7 963 aa16.93■□□□□ 0.3
LINC00643-202ENST00000553426 H0YIN7 160 aa16.92■□□□□ 0.3
LINC00643-202ENST00000553426 NPHP1O15259 732 aa16.92■□□□□ 0.3
LINC00643-202ENST00000553426 KCNQ3O43525 872 aa16.92■□□□□ 0.3
LINC00643-202ENST00000553426 SNRPA1P09661 255 aaKnown RBP16.92■□□□□ 0.3
LINC00643-202ENST00000553426 SIPA1L3O60292 1781 aaPredicted RBP16.92■□□□□ 0.3
LINC00643-202ENST00000553426 A1BGP04217 495 aa16.91■□□□□ 0.3
LINC00643-202ENST00000553426 C9orf131Q5VYM1 1079 aa16.91■□□□□ 0.3
LINC00643-202ENST00000553426 PDZRN3Q9UPQ7 1066 aa16.91■□□□□ 0.3
LINC00643-202ENST00000553426 BRCA1P38398 1863 aaKnown RBP16.9■□□□□ 0.3
LINC00643-202ENST00000553426 TAF7Q15545 349 aaPredicted RBP16.9■□□□□ 0.3
LINC00643-202ENST00000553426 TBC1D9BQ66K14 1250 aa16.9■□□□□ 0.3
LINC00643-202ENST00000553426 C2CD5Q86YS7 1000 aa16.9■□□□□ 0.3
LINC00643-202ENST00000553426 TTLL6Q8N841 843 aa16.9■□□□□ 0.3
LINC00643-202ENST00000553426 SETDB2Q96T68 719 aa16.9■□□□□ 0.3
LINC00643-202ENST00000553426 ARFGEF1Q9Y6D6 1849 aa16.9■□□□□ 0.3
LINC00643-202ENST00000553426 CARMIL3Q8ND23 1372 aa16.89■□□□□ 0.3
LINC00643-202ENST00000553426 PDE6BP35913 854 aa16.89■□□□□ 0.29
LINC00643-202ENST00000553426 DCTN1Q14203 1278 aa16.89■□□□□ 0.29
LINC00643-202ENST00000553426 DNAJC5GQ8N7S2 189 aa16.89■□□□□ 0.29
LINC00643-202ENST00000553426 DZIP3Q86Y13 1208 aaKnown RBP16.88■□□□□ 0.29
LINC00643-202ENST00000553426 PNISRQ8TF01 805 aaKnown RBP16.88■□□□□ 0.29
LINC00643-202ENST00000553426 RNF181Q9P0P0 153 aa16.88■□□□□ 0.29
LINC00643-202ENST00000553426 ZNF652Q9Y2D9 606 aa16.88■□□□□ 0.29
LINC00643-202ENST00000553426 USP16Q9Y5T5 823 aa16.88■□□□□ 0.29
LINC00643-202ENST00000553426 MAPK8IP3Q9UPT6 1336 aa16.88■□□□□ 0.29
LINC00643-202ENST00000553426 AFDNP55196 1824 aaKnown RBP16.87■□□□□ 0.29
LINC00643-202ENST00000553426 CAMTA2O94983 1202 aa16.87■□□□□ 0.29
LINC00643-202ENST00000553426 RALBP1Q15311 655 aa16.87■□□□□ 0.29
LINC00643-202ENST00000553426 CNBD1Q8NA66 436 aa16.87■□□□□ 0.29
LINC00643-202ENST00000553426 BRIP1Q9BX63 1249 aa16.87■□□□□ 0.29
LINC00643-202ENST00000553426 NRXN2Q9P2S2 1712 aa16.87■□□□□ 0.29
LINC00643-202ENST00000553426 ST5P78524 1137 aa16.86■□□□□ 0.29
LINC00643-202ENST00000553426 CLEC4GQ6UXB4 293 aa16.86■□□□□ 0.29
LINC00643-202ENST00000553426 C16orf71Q8IYS4 520 aaPredicted RBP16.86■□□□□ 0.29
LINC00643-202ENST00000553426 KDM2BQ8NHM5 1336 aa16.86■□□□□ 0.29
LINC00643-202ENST00000553426 TOMM70O94826 608 aa16.85■□□□□ 0.29
LINC00643-202ENST00000553426 NFE2L2Q16236 605 aa16.85■□□□□ 0.29
LINC00643-202ENST00000553426 PRR5LQ6MZQ0 368 aa16.85■□□□□ 0.29
LINC00643-202ENST00000553426 ZNF622Q969S3 477 aaKnown RBP eCLIP16.85■□□□□ 0.29
LINC00643-202ENST00000553426 SCN7AQ01118 1682 aa16.85■□□□□ 0.29
LINC00643-202ENST00000553426 PRAMEF22A3QJZ6 481 aa16.84■□□□□ 0.29
LINC00643-202ENST00000553426 LMNB1P20700 586 aa16.84■□□□□ 0.29
LINC00643-202ENST00000553426 PIP4K2AP48426 406 aaPredicted RBP16.84■□□□□ 0.29
LINC00643-202ENST00000553426 APLP1P51693 650 aa16.84■□□□□ 0.29
LINC00643-202ENST00000553426 MIS18AQ9NYP9 233 aa16.84■□□□□ 0.29
LINC00643-202ENST00000553426 NBPF5PQ86XG9 351 aaPredicted RBP16.83■□□□□ 0.28
LINC00643-202ENST00000553426 PLEKHF1Q96S99 279 aa16.83■□□□□ 0.28
LINC00643-202ENST00000553426 NMRK2Q9NPI5 230 aa16.83■□□□□ 0.28
LINC00643-202ENST00000553426 ZC3H4Q9UPT8 1303 aaKnown RBP16.83■□□□□ 0.28
LINC00643-202ENST00000553426 HTRA3P83110 453 aa16.82■□□□□ 0.28
LINC00643-202ENST00000553426 WDR90Q96KV7 1748 aa16.82■□□□□ 0.28
LINC00643-202ENST00000553426 RGL2O15211 777 aa16.81■□□□□ 0.28
LINC00643-202ENST00000553426 RASSF7Q02833 373 aa16.81■□□□□ 0.28
LINC00643-202ENST00000553426 CCDC24Q8N4L8 307 aa16.81■□□□□ 0.28
LINC00643-202ENST00000553426 CNKSR1Q969H4 720 aa16.81■□□□□ 0.28
LINC00643-202ENST00000553426 NBPF26B4DH59 902 aa16.8■□□□□ 0.28
LINC00643-202ENST00000553426 NBPF10Q6P3W6 841 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms