RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 NPC1L1Q9UHC9 1359 aa15.43■□□□□ 0.06
NEK3-204ENST00000552973 TJP1Q07157 1748 aa15.43■□□□□ 0.06
NEK3-204ENST00000552973 N4BP2Q86UW6 1770 aaPredicted RBP15.42■□□□□ 0.06
NEK3-204ENST00000552973 MRC1P22897 1456 aa15.42■□□□□ 0.06
NEK3-204ENST00000552973 COL15A1P39059 1388 aa15.42■□□□□ 0.06
NEK3-204ENST00000552973 ZNF496Q96IT1 587 aaPredicted RBP15.42■□□□□ 0.06
NEK3-204ENST00000552973 PHACTR3Q96KR7 559 aa15.42■□□□□ 0.06
NEK3-204ENST00000552973 ZNF330Q9Y3S2 320 aaPredicted RBP15.42■□□□□ 0.06
NEK3-204ENST00000552973 KCPQ6ZWJ8 1503 aa15.42■□□□□ 0.06
NEK3-204ENST00000552973 COL3A1P02461 1466 aaPredicted RBP15.41■□□□□ 0.06
NEK3-204ENST00000552973 STARD3NLO95772 234 aa15.41■□□□□ 0.06
NEK3-204ENST00000552973 SERPINB2P05120 415 aa15.41■□□□□ 0.06
NEK3-204ENST00000552973 HSPA6P17066 643 aa15.41■□□□□ 0.06
NEK3-204ENST00000552973 PRKAR2BP31323 418 aa15.41■□□□□ 0.06
NEK3-204ENST00000552973 ZNF790Q6PG37 636 aa15.41■□□□□ 0.06
NEK3-204ENST00000552973 SCN11AQ9UI33 1791 aa15.41■□□□□ 0.06
NEK3-204ENST00000552973 KIAA1551Q9HCM1 1747 aa15.4■□□□□ 0.06
NEK3-204ENST00000552973 KCNQ3O43525 872 aa15.4■□□□□ 0.06
NEK3-204ENST00000552973 CFAP53Q96M91 514 aa15.4■□□□□ 0.06
NEK3-204ENST00000552973 NMRK2Q9NPI5 230 aa15.4■□□□□ 0.06
NEK3-204ENST00000552973 EIF5P55010 431 aaKnown RBP15.39■□□□□ 0.05
NEK3-204ENST00000552973 TBC1D2BQ9UPU7 963 aa15.39■□□□□ 0.05
NEK3-204ENST00000552973 KIF13BQ9NQT8 1826 aa15.38■□□□□ 0.05
NEK3-204ENST00000552973 HEG1Q9ULI3 1381 aa15.38■□□□□ 0.05
NEK3-204ENST00000552973 A1BGP04217 495 aa15.38■□□□□ 0.05
NEK3-204ENST00000552973 U2AF1L5P0DN76 240 aaPredicted RBP15.38■□□□□ 0.05
NEK3-204ENST00000552973 U2AF1Q01081 240 aaKnown RBP eCLIP15.38■□□□□ 0.05
NEK3-204ENST00000552973 RSPH6AQ9H0K4 717 aa15.38■□□□□ 0.05
NEK3-204ENST00000552973 RNF181Q9P0P0 153 aa15.38■□□□□ 0.05
NEK3-204ENST00000552973 BTBD11A6QL63 1104 aa15.37■□□□□ 0.05
NEK3-204ENST00000552973 PPP2R1AP30153 589 aa15.37■□□□□ 0.05
NEK3-204ENST00000552973 TBC1D9BQ66K14 1250 aa15.37■□□□□ 0.05
NEK3-204ENST00000552973 CCDC24Q8N4L8 307 aa15.37■□□□□ 0.05
NEK3-204ENST00000552973 FMNL2Q96PY5 1086 aa15.37■□□□□ 0.05
NEK3-204ENST00000552973 NUDCQ9Y266 331 aa15.37■□□□□ 0.05
NEK3-204ENST00000552973 A0A087WZG4 1122 aa15.36■□□□□ 0.05
NEK3-204ENST00000552973 C2CD5Q86YS7 1000 aa15.36■□□□□ 0.05
NEK3-204ENST00000552973 TEX13AQ9BXU3 409 aaPredicted RBP15.36■□□□□ 0.05
NEK3-204ENST00000552973 ADAMTS7Q9UKP4 1686 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 PRAMEF22A3QJZ6 481 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 TOMM70O94826 608 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 PIP4K2AP48426 406 aaPredicted RBP15.35■□□□□ 0.05
NEK3-204ENST00000552973 RASSF7Q02833 373 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 DCTN1Q14203 1278 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 MCM10Q7L590 875 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 CARMIL3Q8ND23 1372 aa15.35■□□□□ 0.05
NEK3-204ENST00000552973 NPM2Q86SE8 214 aaKnown RBP15.34■□□□□ 0.05
NEK3-204ENST00000552973 TTLL6Q8N841 843 aa15.34■□□□□ 0.05
NEK3-204ENST00000552973 USP16Q9Y5T5 823 aa15.34■□□□□ 0.05
NEK3-204ENST00000552973 H0YIN7 160 aa15.33■□□□□ 0.04
NEK3-204ENST00000552973 IL6STP40189 918 aaPredicted RBP15.33■□□□□ 0.04
NEK3-204ENST00000552973 RTF1Q92541 710 aaKnown RBP15.33■□□□□ 0.04
NEK3-204ENST00000552973 RRAGCQ9HB90 399 aa15.33■□□□□ 0.04
NEK3-204ENST00000552973 ZNF219Q9P2Y4 722 aaPredicted RBP15.33■□□□□ 0.04
NEK3-204ENST00000552973 CEMIPQ8WUJ3 1361 aa15.33■□□□□ 0.04
NEK3-204ENST00000552973 PRELPP51888 382 aa15.32■□□□□ 0.04
NEK3-204ENST00000552973 C16orf71Q8IYS4 520 aaPredicted RBP15.32■□□□□ 0.04
NEK3-204ENST00000552973 ZNF622Q969S3 477 aaKnown RBP eCLIP15.32■□□□□ 0.04
NEK3-204ENST00000552973 CAMTA2O94983 1202 aa15.31■□□□□ 0.04
NEK3-204ENST00000552973 PRR5LQ6MZQ0 368 aa15.31■□□□□ 0.04
NEK3-204ENST00000552973 NPHP1O15259 732 aa15.3■□□□□ 0.04
NEK3-204ENST00000552973 DZIP3Q86Y13 1208 aaKnown RBP15.3■□□□□ 0.04
NEK3-204ENST00000552973 KDM2BQ8NHM5 1336 aa15.3■□□□□ 0.04
NEK3-204ENST00000552973 SETDB2Q96T68 719 aa15.3■□□□□ 0.04
NEK3-204ENST00000552973 MIS18AQ9NYP9 233 aa15.3■□□□□ 0.04
NEK3-204ENST00000552973 SNRPA1P09661 255 aaKnown RBP15.29■□□□□ 0.04
NEK3-204ENST00000552973 LMNB1P20700 586 aa15.29■□□□□ 0.04
NEK3-204ENST00000552973 APLP1P51693 650 aa15.29■□□□□ 0.04
NEK3-204ENST00000552973 BRIP1Q9BX63 1249 aa15.29■□□□□ 0.04
NEK3-204ENST00000552973 NFKBIEO00221 500 aa15.28■□□□□ 0.04
NEK3-204ENST00000552973 C21orf2O43822 256 aa15.28■□□□□ 0.04
NEK3-204ENST00000552973 PDE6BP35913 854 aa15.28■□□□□ 0.04
NEK3-204ENST00000552973 HTRA3P83110 453 aa15.28■□□□□ 0.04
NEK3-204ENST00000552973 RBM46Q8TBY0 533 aaKnown RBP15.28■□□□□ 0.04
NEK3-204ENST00000552973 BRCA1P38398 1863 aaKnown RBP15.28■□□□□ 0.04
NEK3-204ENST00000552973 UBR2Q8IWV8 1755 aa15.27■□□□□ 0.04
NEK3-204ENST00000552973 CNBD1Q8NA66 436 aa15.27■□□□□ 0.04
NEK3-204ENST00000552973 TAF7Q15545 349 aaPredicted RBP15.26■□□□□ 0.03
NEK3-204ENST00000552973 FAM177BA6PVY3 158 aa15.25■□□□□ 0.03
NEK3-204ENST00000552973 NBPF26B4DH59 902 aa15.25■□□□□ 0.03
NEK3-204ENST00000552973 HTATSF1O43719 755 aaKnown RBP15.25■□□□□ 0.03
NEK3-204ENST00000552973 ST5P78524 1137 aa15.25■□□□□ 0.03
NEK3-204ENST00000552973 NBPF10Q6P3W6 841 aaKnown RBP15.25■□□□□ 0.03
NEK3-204ENST00000552973 NBPF15Q8N660 670 aa15.25■□□□□ 0.03
NEK3-204ENST00000552973 DNAJC5GQ8N7S2 189 aa15.25■□□□□ 0.03
NEK3-204ENST00000552973 AFDNP55196 1824 aaKnown RBP15.24■□□□□ 0.03
NEK3-204ENST00000552973 VIRMAQ69YN4 1812 aaKnown RBP15.24■□□□□ 0.03
NEK3-204ENST00000552973 ARFGEF1Q9Y6D6 1849 aa15.24■□□□□ 0.03
NEK3-204ENST00000552973 NRXN2Q9P2S2 1712 aa15.24■□□□□ 0.03
NEK3-204ENST00000552973 GLTPD2A6NH11 291 aa15.24■□□□□ 0.03
NEK3-204ENST00000552973 NBPF5PQ86XG9 351 aaPredicted RBP15.24■□□□□ 0.03
NEK3-204ENST00000552973 NGEFQ8N5V2 710 aa15.24■□□□□ 0.03
NEK3-204ENST00000552973 PDZRN3Q9UPQ7 1066 aa15.24■□□□□ 0.03
NEK3-204ENST00000552973 NEFMP07197 916 aa15.23■□□□□ 0.03
NEK3-204ENST00000552973 FSTL1Q12841 308 aa15.23■□□□□ 0.03
NEK3-204ENST00000552973 THUMPD2Q9BTF0 503 aaKnown RBP15.23■□□□□ 0.03
NEK3-204ENST00000552973 SRGNP10124 158 aa15.22■□□□□ 0.03
NEK3-204ENST00000552973 ERFEQ4G0M1 354 aa15.22■□□□□ 0.03
NEK3-204ENST00000552973 CLEC4GQ6UXB4 293 aa15.22■□□□□ 0.03
NEK3-204ENST00000552973 CNKSR1Q969H4 720 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms