RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 DIAPH1O60610 1272 aaKnown RBP16.04■□□□□ 0.16
CKAP4-202ENST00000552828 CHRNA5P30532 468 aa16.04■□□□□ 0.16
CKAP4-202ENST00000552828 NFIXQ14938 502 aa16.03■□□□□ 0.16
CKAP4-202ENST00000552828 DNAJC5GQ8N7S2 189 aa16.03■□□□□ 0.16
CKAP4-202ENST00000552828 BCL2L12Q9HB09 334 aa16.03■□□□□ 0.16
CKAP4-202ENST00000552828 ARFGEF1Q9Y6D6 1849 aa16.03■□□□□ 0.16
CKAP4-202ENST00000552828 COL15A1P39059 1388 aa16.02■□□□□ 0.16
CKAP4-202ENST00000552828 RBM46Q8TBY0 533 aaKnown RBP16.02■□□□□ 0.16
CKAP4-202ENST00000552828 ZBTB1Q9Y2K1 713 aa16.02■□□□□ 0.16
CKAP4-202ENST00000552828 NPC1L1Q9UHC9 1359 aa16.01■□□□□ 0.15
CKAP4-202ENST00000552828 CC2D1BQ5T0F9 858 aaKnown RBP16■□□□□ 0.15
CKAP4-202ENST00000552828 RNF181Q9P0P0 153 aa16■□□□□ 0.15
CKAP4-202ENST00000552828 KDM2BQ8NHM5 1336 aa15.99■□□□□ 0.15
CKAP4-202ENST00000552828 EIF5P55010 431 aaKnown RBP15.99■□□□□ 0.15
CKAP4-202ENST00000552828 ZC3H4Q9UPT8 1303 aaKnown RBP15.98■□□□□ 0.15
CKAP4-202ENST00000552828 COL3A1P02461 1466 aaPredicted RBP15.98■□□□□ 0.15
CKAP4-202ENST00000552828 STARD3NLO95772 234 aa15.98■□□□□ 0.15
CKAP4-202ENST00000552828 SERPINB2P05120 415 aa15.98■□□□□ 0.15
CKAP4-202ENST00000552828 FSTL1Q12841 308 aa15.98■□□□□ 0.15
CKAP4-202ENST00000552828 IL17REQ8NFR9 667 aa15.98■□□□□ 0.15
CKAP4-202ENST00000552828 NRXN2Q9P2S2 1712 aa15.98■□□□□ 0.15
CKAP4-202ENST00000552828 A0A087WZG4 1122 aa15.97■□□□□ 0.15
CKAP4-202ENST00000552828 CANXP27824 592 aaKnown RBP15.97■□□□□ 0.15
CKAP4-202ENST00000552828 TTC5Q8N0Z6 440 aa15.97■□□□□ 0.15
CKAP4-202ENST00000552828 GNAT3A8MTJ3 354 aa15.96■□□□□ 0.15
CKAP4-202ENST00000552828 ZNF790Q6PG37 636 aa15.96■□□□□ 0.15
CKAP4-202ENST00000552828 C16orf71Q8IYS4 520 aaPredicted RBP15.96■□□□□ 0.15
CKAP4-202ENST00000552828 TTLL6Q8N841 843 aa15.96■□□□□ 0.15
CKAP4-202ENST00000552828 GAS2L2Q8NHY3 880 aa15.96■□□□□ 0.15
CKAP4-202ENST00000552828 ZNF496Q96IT1 587 aaPredicted RBP15.96■□□□□ 0.15
CKAP4-202ENST00000552828 TEX13AQ9BXU3 409 aaPredicted RBP15.96■□□□□ 0.15
CKAP4-202ENST00000552828 UBR2Q8IWV8 1755 aa15.95■□□□□ 0.14
CKAP4-202ENST00000552828 LMNB1P20700 586 aa15.95■□□□□ 0.14
CKAP4-202ENST00000552828 ZEB1P37275 1124 aaPredicted RBP15.95■□□□□ 0.14
CKAP4-202ENST00000552828 RRAGCQ9HB90 399 aa15.95■□□□□ 0.14
CKAP4-202ENST00000552828 HEG1Q9ULI3 1381 aa15.95■□□□□ 0.14
CKAP4-202ENST00000552828 H0YIN7 160 aa15.94■□□□□ 0.14
CKAP4-202ENST00000552828 PRELPP51888 382 aa15.94■□□□□ 0.14
CKAP4-202ENST00000552828 TEFQ10587 303 aa15.94■□□□□ 0.14
CKAP4-202ENST00000552828 C2CD5Q86YS7 1000 aa15.94■□□□□ 0.14
CKAP4-202ENST00000552828 CEMIPQ8WUJ3 1361 aa15.94■□□□□ 0.14
CKAP4-202ENST00000552828 CARMIL3Q8ND23 1372 aa15.93■□□□□ 0.14
CKAP4-202ENST00000552828 U2SURPO15042 1029 aaKnown RBP15.93■□□□□ 0.14
CKAP4-202ENST00000552828 IL6STP40189 918 aaPredicted RBP15.93■□□□□ 0.14
CKAP4-202ENST00000552828 RASSF7Q02833 373 aa15.93■□□□□ 0.14
CKAP4-202ENST00000552828 PDZRN3Q9UPQ7 1066 aa15.93■□□□□ 0.14
CKAP4-202ENST00000552828 AFDNP55196 1824 aaKnown RBP15.93■□□□□ 0.14
CKAP4-202ENST00000552828 GLTPD2A6NH11 291 aa15.92■□□□□ 0.14
CKAP4-202ENST00000552828 TBC1D9BQ66K14 1250 aa15.92■□□□□ 0.14
CKAP4-202ENST00000552828 BRIP1Q9BX63 1249 aa15.92■□□□□ 0.14
CKAP4-202ENST00000552828 SBF1O95248 1867 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 NFKBIEO00221 500 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 BICDL1Q6ZP65 573 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 JMYQ8N9B5 988 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 SMC1BQ8NDV3 1235 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 KLRG1Q96E93 195 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 PHACTR3Q96KR7 559 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 FMNL2Q96PY5 1086 aa15.91■□□□□ 0.14
CKAP4-202ENST00000552828 DLEC1Q9Y238 1755 aa15.9■□□□□ 0.14
CKAP4-202ENST00000552828 VIRMAQ69YN4 1812 aaKnown RBP15.9■□□□□ 0.14
CKAP4-202ENST00000552828 PDE6BP35913 854 aa15.9■□□□□ 0.14
CKAP4-202ENST00000552828 TBC1D2BQ9UPU7 963 aa15.9■□□□□ 0.14
CKAP4-202ENST00000552828 TNRC6CQ9HCJ0 1690 aaKnown RBP15.89■□□□□ 0.13
CKAP4-202ENST00000552828 A1BGP04217 495 aa15.89■□□□□ 0.13
CKAP4-202ENST00000552828 VEGFAP15692 232 aaPredicted RBP15.89■□□□□ 0.13
CKAP4-202ENST00000552828 PRR5LQ6MZQ0 368 aa15.89■□□□□ 0.13
CKAP4-202ENST00000552828 RSPH6AQ9H0K4 717 aa15.89■□□□□ 0.13
CKAP4-202ENST00000552828 PCNTO95613 3336 aa15.89■□□□□ 0.13
CKAP4-202ENST00000552828 WDR90Q96KV7 1748 aa15.88■□□□□ 0.13
CKAP4-202ENST00000552828 BTBD11A6QL63 1104 aa15.88■□□□□ 0.13
CKAP4-202ENST00000552828 CAMTA2O94983 1202 aa15.88■□□□□ 0.13
CKAP4-202ENST00000552828 HTRA3P83110 453 aa15.88■□□□□ 0.13
CKAP4-202ENST00000552828 SIPA1L3O60292 1781 aaPredicted RBP15.87■□□□□ 0.13
CKAP4-202ENST00000552828 KCNQ3O43525 872 aa15.87■□□□□ 0.13
CKAP4-202ENST00000552828 PRKAR2BP31323 418 aa15.87■□□□□ 0.13
CKAP4-202ENST00000552828 SETDB2Q96T68 719 aa15.87■□□□□ 0.13
CKAP4-202ENST00000552828 SCN7AQ01118 1682 aa15.86■□□□□ 0.13
CKAP4-202ENST00000552828 POTECB2RU33 542 aa15.86■□□□□ 0.13
CKAP4-202ENST00000552828 ZNF622Q969S3 477 aaKnown RBP eCLIP15.86■□□□□ 0.13
CKAP4-202ENST00000552828 CFAP53Q96M91 514 aa15.86■□□□□ 0.13
CKAP4-202ENST00000552828 LTBP3Q9NS15 1303 aa15.86■□□□□ 0.13
CKAP4-202ENST00000552828 C21orf2O43822 256 aa15.85■□□□□ 0.13
CKAP4-202ENST00000552828 CNGB1Q14028 1251 aaPredicted RBP15.85■□□□□ 0.13
CKAP4-202ENST00000552828 STYK1Q6J9G0 422 aa15.85■□□□□ 0.13
CKAP4-202ENST00000552828 CLEC4GQ6UXB4 293 aa15.85■□□□□ 0.13
CKAP4-202ENST00000552828 CNBD1Q8NA66 436 aa15.85■□□□□ 0.13
CKAP4-202ENST00000552828 ZNF330Q9Y3S2 320 aaPredicted RBP15.85■□□□□ 0.13
CKAP4-202ENST00000552828 USP16Q9Y5T5 823 aa15.85■□□□□ 0.13
CKAP4-202ENST00000552828 RGL2O15211 777 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 SRGNP10124 158 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 DPY19L2Q6NUT2 758 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 NPM2Q86SE8 214 aaKnown RBP15.84■□□□□ 0.13
CKAP4-202ENST00000552828 CCDC24Q8N4L8 307 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 CNKSR1Q969H4 720 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 NUDCQ9Y266 331 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 ANKRD31Q8N7Z5 1873 aa15.84■□□□□ 0.13
CKAP4-202ENST00000552828 SNRPA1P09661 255 aaKnown RBP15.83■□□□□ 0.12
CKAP4-202ENST00000552828 DZIP3Q86Y13 1208 aaKnown RBP15.83■□□□□ 0.12
CKAP4-202ENST00000552828 KLRG2A4D1S0 409 aaPredicted RBP15.82■□□□□ 0.12
CKAP4-202ENST00000552828 HTATSF1O43719 755 aaKnown RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms