RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 KIAA0232Q92628 1395 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 TUBGCP6Q96RT7 1819 aa5.84□□□□□ -1.48
LIMA1-214ENST00000552783 MYO5BQ9ULV0 1848 aa5.84□□□□□ -1.48
LIMA1-214ENST00000552783 TSPOAP1O95153 1857 aa5.84□□□□□ -1.48
LIMA1-214ENST00000552783 CHL1O00533 1208 aa5.84□□□□□ -1.48
LIMA1-214ENST00000552783 GTF2E1P29083 439 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-214ENST00000552783 LMOD3Q0VAK6 560 aa5.84□□□□□ -1.48
LIMA1-214ENST00000552783 ST3GAL1Q11201 340 aa5.84□□□□□ -1.48
LIMA1-214ENST00000552783 SYAP1Q96A49 352 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-214ENST00000552783 C16orf45Q96MC5 204 aaPredicted RBP5.84□□□□□ -1.48
LIMA1-214ENST00000552783 CTIFO43310 598 aaKnown RBP5.83□□□□□ -1.48
LIMA1-214ENST00000552783 ZSCAN22P10073 491 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-214ENST00000552783 UVSSAQ2YD98 709 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 GTPBP4Q9BZE4 634 aaKnown RBP5.83□□□□□ -1.48
LIMA1-214ENST00000552783 WDR33Q9C0J8 1336 aaKnown RBP5.83□□□□□ -1.48
LIMA1-214ENST00000552783 ZFYVE9O95405 1425 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 POGZQ7Z3K3 1410 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 KIF20BQ96Q89 1820 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 STX6O43752 255 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 HDGFP51858 240 aaKnown RBP5.83□□□□□ -1.48
LIMA1-214ENST00000552783 TMEM87AQ8NBN3 555 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 SPG7Q9UQ90 795 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 SNX14Q9Y5W7 946 aa5.83□□□□□ -1.48
LIMA1-214ENST00000552783 KIF24Q5T7B8 1368 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 ARID5BQ14865 1188 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 ADCK5Q3MIX3 580 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 FAM184AQ8NB25 1140 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 BBXQ8WY36 941 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 RBM33Q96EV2 1170 aaKnown RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 TTC14Q96N46 770 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 STK31Q9BXU1 1019 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 ST7Q9NRC1 585 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CGNQ9P2M7 1197 aaKnown RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 V9GYY5 206 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 VGLL3A8MV65 326 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 PHF14O94880 888 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 F13A1P00488 732 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 LIG1P18858 919 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 HSPA4P34932 840 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CEBPAP49715 358 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 UBE2HP62256 183 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 FERMT3Q86UX7 667 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CKAP2LQ8IYA6 745 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 LRRCC1Q9C099 1032 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 TMEM51Q9NW97 253 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CTNNA3Q9UI47 895 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 TSPYL4Q9UJ04 414 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CCDC61Q9Y6R9 512 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 ARAP3Q8WWN8 1544 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 EIF2S2P20042 333 aaKnown RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 MCM2P49736 904 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 EIF4A2Q14240 407 aaKnown RBP5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CCDC186Q7Z3E2 898 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CCDC83Q8IWF9 413 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 NECAB1Q8N987 351 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 PIK3C2BO00750 1634 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 CPS1P31327 1500 aa5.82□□□□□ -1.48
LIMA1-214ENST00000552783 A0A087WWV3 80 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 USP27XA6NNY8 438 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 KIF20AO95235 890 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 OS9Q13438 667 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-214ENST00000552783 LRRFIP2Q9Y608 721 aaKnown RBP5.81□□□□□ -1.48
LIMA1-214ENST00000552783 WASLO00401 505 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-214ENST00000552783 LETM1O95202 739 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-214ENST00000552783 ANAPC15P60006 121 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 CCDC144BQ3MJ40 725 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 HSP90AB2PQ58FF8 381 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 CCDC144CPQ8IYA2 1237 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 MTMR6Q9Y217 621 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 MRVI1Q9Y6F6 885 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 SLFN14P0C7P3 912 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 GJB2P29033 226 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 PTH1RQ03431 593 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 CWC27Q6UX04 472 aaKnown RBP5.81□□□□□ -1.48
LIMA1-214ENST00000552783 TTC6Q86TZ1 520 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 TCEANC2Q96MN5 208 aa5.81□□□□□ -1.48
LIMA1-214ENST00000552783 CPSF1Q10570 1443 aaKnown RBP5.81□□□□□ -1.48
LIMA1-214ENST00000552783 GNAI2P04899 355 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 MCCP23508 829 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 NLRP6P59044 892 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 LSG1Q9H089 658 aaKnown RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 TAF6LQ9Y6J9 622 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 HECW2Q9P2P5 1572 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 PTPRCP08575 1304 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 VPS37CA5D8V6 355 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 HMMRO75330 724 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 CASTP20810 708 aaKnown RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 ZNF771Q7L3S4 317 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 PI4K2BQ8TCG2 481 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 CACTINQ8WUQ7 758 aaKnown RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 SYTL4Q96C24 671 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 IL17RAQ96F46 866 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 HYPKQ9NX55 129 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 EID1Q9Y6B2 187 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 CRB1P82279 1406 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 HAP1P54257 671 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 CDC37L1Q7L3B6 337 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 CBX8Q9HC52 389 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms