RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CANXP27824 592 aaKnown RBP21.78■■□□□ 1.08
VPS29-207ENST00000549970 TGFB2P61812 414 aa21.78■■□□□ 1.08
VPS29-207ENST00000549970 A0A0G2JLW4 131 aa21.77■■□□□ 1.08
VPS29-207ENST00000549970 BTBD11A6QL63 1104 aa21.77■■□□□ 1.08
VPS29-207ENST00000549970 STARD3NLO95772 234 aa21.77■■□□□ 1.08
VPS29-207ENST00000549970 DDR1Q08345 913 aa21.77■■□□□ 1.08
VPS29-207ENST00000549970 RTF1Q92541 710 aaKnown RBP21.77■■□□□ 1.08
VPS29-207ENST00000549970 MCM10Q7L590 875 aa21.76■■□□□ 1.07
VPS29-207ENST00000549970 KCNQ3O43525 872 aa21.75■■□□□ 1.07
VPS29-207ENST00000549970 FMNL2Q96PY5 1086 aa21.75■■□□□ 1.07
VPS29-207ENST00000549970 NARFQ9UHQ1 456 aa21.75■■□□□ 1.07
VPS29-207ENST00000549970 DPEP1P16444 411 aa21.74■■□□□ 1.07
VPS29-207ENST00000549970 DCTN1Q14203 1278 aa21.74■■□□□ 1.07
VPS29-207ENST00000549970 BCS1LQ9Y276 419 aa21.74■■□□□ 1.07
VPS29-207ENST00000549970 POLRMTO00411 1230 aaKnown RBP21.73■■□□□ 1.07
VPS29-207ENST00000549970 TM4SF1P30408 202 aa21.73■■□□□ 1.07
VPS29-207ENST00000549970 TEX13AQ9BXU3 409 aaPredicted RBP21.73■■□□□ 1.07
VPS29-207ENST00000549970 ZNF330Q9Y3S2 320 aaPredicted RBP21.72■■□□□ 1.07
VPS29-207ENST00000549970 NEFMP07197 916 aa21.71■■□□□ 1.07
VPS29-207ENST00000549970 EIF5P55010 431 aaKnown RBP21.71■■□□□ 1.07
VPS29-207ENST00000549970 NFIXQ14938 502 aa21.71■■□□□ 1.07
VPS29-207ENST00000549970 BCL2L12Q9HB09 334 aa21.71■■□□□ 1.07
VPS29-207ENST00000549970 DDX10Q13206 875 aaKnown RBP21.7■■□□□ 1.06
VPS29-207ENST00000549970 BRCA1P38398 1863 aaKnown RBP21.7■■□□□ 1.06
VPS29-207ENST00000549970 ATP10DQ9P241 1426 aa21.7■■□□□ 1.06
VPS29-207ENST00000549970 A0A087WZG4 1122 aa21.69■■□□□ 1.06
VPS29-207ENST00000549970 HTATSF1O43719 755 aaKnown RBP21.69■■□□□ 1.06
VPS29-207ENST00000549970 A1BGP04217 495 aa21.68■■□□□ 1.06
VPS29-207ENST00000549970 KCNA3P22001 575 aa21.68■■□□□ 1.06
VPS29-207ENST00000549970 AFDNP55196 1824 aaKnown RBP21.68■■□□□ 1.06
VPS29-207ENST00000549970 DLG5Q8TDM6 1919 aa21.67■■□□□ 1.06
VPS29-207ENST00000549970 GIGYF1O75420 1035 aaPredicted RBP21.67■■□□□ 1.06
VPS29-207ENST00000549970 IL6STP40189 918 aaPredicted RBP21.67■■□□□ 1.06
VPS29-207ENST00000549970 RALBP1Q15311 655 aa21.67■■□□□ 1.06
VPS29-207ENST00000549970 BICDL1Q6ZP65 573 aa21.67■■□□□ 1.06
VPS29-207ENST00000549970 TBC1D2BQ9UPU7 963 aa21.67■■□□□ 1.06
VPS29-207ENST00000549970 ADCY9O60503 1353 aa21.66■■□□□ 1.06
VPS29-207ENST00000549970 PRAMEF22A3QJZ6 481 aa21.66■■□□□ 1.06
VPS29-207ENST00000549970 CHRNA5P30532 468 aa21.66■■□□□ 1.06
VPS29-207ENST00000549970 NPM2Q86SE8 214 aaKnown RBP21.66■■□□□ 1.06
VPS29-207ENST00000549970 PLEKHF1Q96S99 279 aa21.66■■□□□ 1.06
VPS29-207ENST00000549970 PIM2Q9P1W9 311 aa21.66■■□□□ 1.06
VPS29-207ENST00000549970 USP16Q9Y5T5 823 aa21.66■■□□□ 1.06
VPS29-207ENST00000549970 SERPINB2P05120 415 aa21.65■■□□□ 1.06
VPS29-207ENST00000549970 ARHGAP27Q6ZUM4 889 aa21.65■■□□□ 1.06
VPS29-207ENST00000549970 SCN7AQ01118 1682 aa21.65■■□□□ 1.06
VPS29-207ENST00000549970 NRXN2Q9P2S2 1712 aa21.64■■□□□ 1.06
VPS29-207ENST00000549970 MAPK8IP3Q9UPT6 1336 aa21.64■■□□□ 1.05
VPS29-207ENST00000549970 SNRPA1P09661 255 aaKnown RBP21.64■■□□□ 1.05
VPS29-207ENST00000549970 PIP4K2AP48426 406 aaPredicted RBP21.64■■□□□ 1.05
VPS29-207ENST00000549970 C1QTNF8P60827 252 aa21.64■■□□□ 1.05
VPS29-207ENST00000549970 TAF7Q15545 349 aaPredicted RBP21.64■■□□□ 1.05
VPS29-207ENST00000549970 ZNF526Q8TF50 670 aaPredicted RBP21.64■■□□□ 1.05
VPS29-207ENST00000549970 MIS18AQ9NYP9 233 aa21.64■■□□□ 1.05
VPS29-207ENST00000549970 NFE2L2Q16236 605 aa21.63■■□□□ 1.05
VPS29-207ENST00000549970 DALRD3Q5D0E6 543 aaKnown RBP21.63■■□□□ 1.05
VPS29-207ENST00000549970 TBC1D9BQ66K14 1250 aa21.63■■□□□ 1.05
VPS29-207ENST00000549970 ARFGEF1Q9Y6D6 1849 aa21.62■■□□□ 1.05
VPS29-207ENST00000549970 PNNQ9H307 717 aaKnown RBP21.62■■□□□ 1.05
VPS29-207ENST00000549970 GPBP1L1Q9HC44 474 aaPredicted RBP21.62■■□□□ 1.05
VPS29-207ENST00000549970 DZIP3Q86Y13 1208 aaKnown RBP21.6■■□□□ 1.05
VPS29-207ENST00000549970 THUMPD2Q9BTF0 503 aaKnown RBP21.6■■□□□ 1.05
VPS29-207ENST00000549970 CARMIL3Q8ND23 1372 aa21.6■■□□□ 1.05
VPS29-207ENST00000549970 MYBBP1AQ9BQG0 1328 aaKnown RBP21.59■■□□□ 1.05
VPS29-207ENST00000549970 CAMTA2O94983 1202 aa21.59■■□□□ 1.05
VPS29-207ENST00000549970 PNISRQ8TF01 805 aaKnown RBP21.58■■□□□ 1.05
VPS29-207ENST00000549970 BCORQ6W2J9 1755 aa21.58■■□□□ 1.04
VPS29-207ENST00000549970 KDM3BQ7LBC6 1761 aa21.57■■□□□ 1.04
VPS29-207ENST00000549970 C2CD5Q86YS7 1000 aa21.56■■□□□ 1.04
VPS29-207ENST00000549970 CCDC24Q8N4L8 307 aa21.56■■□□□ 1.04
VPS29-207ENST00000549970 LAMB4A4D0S4 1761 aa21.56■■□□□ 1.04
VPS29-207ENST00000549970 SENP3-EIF4A1A0A087X0R7 540 aa21.55■■□□□ 1.04
VPS29-207ENST00000549970 NBPF26B4DH59 902 aa21.55■■□□□ 1.04
VPS29-207ENST00000549970 NBPF10Q6P3W6 841 aaKnown RBP21.55■■□□□ 1.04
VPS29-207ENST00000549970 NBPF15Q8N660 670 aa21.55■■□□□ 1.04
VPS29-207ENST00000549970 SETDB2Q96T68 719 aa21.55■■□□□ 1.04
VPS29-207ENST00000549970 DLEC1Q9Y238 1755 aa21.55■■□□□ 1.04
VPS29-207ENST00000549970 H0YIN7 160 aa21.54■■□□□ 1.04
VPS29-207ENST00000549970 NPHP1O15259 732 aa21.54■■□□□ 1.04
VPS29-207ENST00000549970 PRR5LQ6MZQ0 368 aa21.54■■□□□ 1.04
VPS29-207ENST00000549970 ANKRD31Q8N7Z5 1873 aa21.54■■□□□ 1.04
VPS29-207ENST00000549970 RIPK4P57078 832 aa21.53■■□□□ 1.04
VPS29-207ENST00000549970 EIF4A1P60842 406 aaKnown RBP21.53■■□□□ 1.04
VPS29-207ENST00000549970 C9orf131Q5VYM1 1079 aa21.53■■□□□ 1.04
VPS29-207ENST00000549970 TTLL6Q8N841 843 aa21.52■■□□□ 1.04
VPS29-207ENST00000549970 CNBD1Q8NA66 436 aa21.52■■□□□ 1.04
VPS29-207ENST00000549970 ZNF652Q9Y2D9 606 aa21.52■■□□□ 1.04
VPS29-207ENST00000549970 CLEC4GQ6UXB4 293 aa21.51■■□□□ 1.03
VPS29-207ENST00000549970 CCDC146Q8IYE0 955 aa21.51■■□□□ 1.03
VPS29-207ENST00000549970 BRIP1Q9BX63 1249 aa21.51■■□□□ 1.03
VPS29-207ENST00000549970 PDE6BP35913 854 aa21.5■■□□□ 1.03
VPS29-207ENST00000549970 TMPOP42166 694 aaKnown RBP21.5■■□□□ 1.03
VPS29-207ENST00000549970 WDR43Q15061 677 aaKnown RBP eCLIP21.5■■□□□ 1.03
VPS29-207ENST00000549970 ZNF622Q969S3 477 aaKnown RBP eCLIP21.5■■□□□ 1.03
VPS29-207ENST00000549970 TSPYL4Q9UJ04 414 aa21.5■■□□□ 1.03
VPS29-207ENST00000549970 RRP7AQ9Y3A4 280 aaKnown RBP21.5■■□□□ 1.03
VPS29-207ENST00000549970 COL11A2P13942 1736 aaPredicted RBP21.49■■□□□ 1.03
VPS29-207ENST00000549970 ST5P78524 1137 aa21.49■■□□□ 1.03
VPS29-207ENST00000549970 RASSF7Q02833 373 aa21.49■■□□□ 1.03
VPS29-207ENST00000549970 NGEFQ8N5V2 710 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms