RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 PRKAR2BP31323 418 aa23.37■■□□□ 1.33
CHMP1A-205ENST00000548650 USPL1Q5W0Q7 1092 aa23.37■■□□□ 1.33
CHMP1A-205ENST00000548650 BCS1LQ9Y276 419 aa23.37■■□□□ 1.33
CHMP1A-205ENST00000548650 SENP3-EIF4A1A0A087X0R7 540 aa23.36■■□□□ 1.33
CHMP1A-205ENST00000548650 POLRMTO00411 1230 aaKnown RBP23.36■■□□□ 1.33
CHMP1A-205ENST00000548650 PPP2R1AP30153 589 aa23.36■■□□□ 1.33
CHMP1A-205ENST00000548650 TTC5Q8N0Z6 440 aa23.36■■□□□ 1.33
CHMP1A-205ENST00000548650 PHACTR3Q96KR7 559 aa23.36■■□□□ 1.33
CHMP1A-205ENST00000548650 ZPR1O75312 459 aa23.35■■□□□ 1.33
CHMP1A-205ENST00000548650 TEFQ10587 303 aa23.35■■□□□ 1.33
CHMP1A-205ENST00000548650 HEG1Q9ULI3 1381 aa23.35■■□□□ 1.33
CHMP1A-205ENST00000548650 KCNA3P22001 575 aa23.34■■□□□ 1.33
CHMP1A-205ENST00000548650 TM4SF1P30408 202 aa23.34■■□□□ 1.33
CHMP1A-205ENST00000548650 ZNF496Q96IT1 587 aaPredicted RBP23.34■■□□□ 1.33
CHMP1A-205ENST00000548650 GPBP1L1Q9HC44 474 aaPredicted RBP23.34■■□□□ 1.33
CHMP1A-205ENST00000548650 NARFQ9UHQ1 456 aa23.34■■□□□ 1.33
CHMP1A-205ENST00000548650 ZNF790Q6PG37 636 aa23.33■■□□□ 1.33
CHMP1A-205ENST00000548650 BCORQ6W2J9 1755 aa23.32■■□□□ 1.32
CHMP1A-205ENST00000548650 BCL2L12Q9HB09 334 aa23.32■■□□□ 1.32
CHMP1A-205ENST00000548650 FCHSD2O94868 740 aa23.31■■□□□ 1.32
CHMP1A-205ENST00000548650 NFIXQ14938 502 aa23.31■■□□□ 1.32
CHMP1A-205ENST00000548650 ZNF526Q8TF50 670 aaPredicted RBP23.31■■□□□ 1.32
CHMP1A-205ENST00000548650 NUDCQ9Y266 331 aa23.31■■□□□ 1.32
CHMP1A-205ENST00000548650 STARD3NLO95772 234 aa23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 U2AF1L5P0DN76 240 aaPredicted RBP23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 CANXP27824 592 aaKnown RBP23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 EIF5P55010 431 aaKnown RBP23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 U2AF1Q01081 240 aaKnown RBP eCLIP23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 ANKRD31Q8N7Z5 1873 aa23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 DLG5Q8TDM6 1919 aa23.29■■□□□ 1.32
CHMP1A-205ENST00000548650 CHRNA5P30532 468 aa23.28■■□□□ 1.32
CHMP1A-205ENST00000548650 PIM2Q9P1W9 311 aa23.28■■□□□ 1.32
CHMP1A-205ENST00000548650 SBF1O95248 1867 aa23.27■■□□□ 1.32
CHMP1A-205ENST00000548650 COL11A2P13942 1736 aaPredicted RBP23.27■■□□□ 1.32
CHMP1A-205ENST00000548650 CARMIL3Q8ND23 1372 aa23.27■■□□□ 1.31
CHMP1A-205ENST00000548650 ARHGAP27Q6ZUM4 889 aa23.26■■□□□ 1.31
CHMP1A-205ENST00000548650 FMNL2Q96PY5 1086 aa23.26■■□□□ 1.31
CHMP1A-205ENST00000548650 LAMB4A4D0S4 1761 aa23.26■■□□□ 1.31
CHMP1A-205ENST00000548650 KCNQ3O43525 872 aa23.25■■□□□ 1.31
CHMP1A-205ENST00000548650 DALRD3Q5D0E6 543 aaKnown RBP23.25■■□□□ 1.31
CHMP1A-205ENST00000548650 TEX13AQ9BXU3 409 aaPredicted RBP23.25■■□□□ 1.31
CHMP1A-205ENST00000548650 A0A087WZG4 1122 aa23.24■■□□□ 1.31
CHMP1A-205ENST00000548650 BTBD11A6QL63 1104 aa23.24■■□□□ 1.31
CHMP1A-205ENST00000548650 KDM3BQ7LBC6 1761 aa23.23■■□□□ 1.31
CHMP1A-205ENST00000548650 SERPINB2P05120 415 aa23.23■■□□□ 1.31
CHMP1A-205ENST00000548650 MCM10Q7L590 875 aa23.23■■□□□ 1.31
CHMP1A-205ENST00000548650 KIF3CO14782 793 aa23.22■■□□□ 1.31
CHMP1A-205ENST00000548650 IL6STP40189 918 aaPredicted RBP23.22■■□□□ 1.31
CHMP1A-205ENST00000548650 RTF1Q92541 710 aaKnown RBP23.2■■□□□ 1.3
CHMP1A-205ENST00000548650 ZNF330Q9Y3S2 320 aaPredicted RBP23.2■■□□□ 1.3
CHMP1A-205ENST00000548650 A1BGP04217 495 aa23.19■■□□□ 1.3
CHMP1A-205ENST00000548650 C9orf131Q5VYM1 1079 aa23.19■■□□□ 1.3
CHMP1A-205ENST00000548650 TBC1D9BQ66K14 1250 aa23.19■■□□□ 1.3
CHMP1A-205ENST00000548650 BICDL1Q6ZP65 573 aa23.19■■□□□ 1.3
CHMP1A-205ENST00000548650 TBC1D2BQ9UPU7 963 aa23.19■■□□□ 1.3
CHMP1A-205ENST00000548650 TIAM2Q8IVF5 1701 aa23.19■■□□□ 1.3
CHMP1A-205ENST00000548650 DCTN1Q14203 1278 aa23.18■■□□□ 1.3
CHMP1A-205ENST00000548650 CEP350Q5VT06 3117 aa23.18■■□□□ 1.3
CHMP1A-205ENST00000548650 TNRC6CQ9HCJ0 1690 aaKnown RBP23.18■■□□□ 1.3
CHMP1A-205ENST00000548650 PRAMEF22A3QJZ6 481 aa23.17■■□□□ 1.3
CHMP1A-205ENST00000548650 HTATSF1O43719 755 aaKnown RBP23.17■■□□□ 1.3
CHMP1A-205ENST00000548650 CAMTA2O94983 1202 aa23.17■■□□□ 1.3
CHMP1A-205ENST00000548650 ARFGEF2Q9Y6D5 1785 aa23.17■■□□□ 1.3
CHMP1A-205ENST00000548650 USP16Q9Y5T5 823 aa23.16■■□□□ 1.3
CHMP1A-205ENST00000548650 CACNA1SQ13698 1873 aa23.15■■□□□ 1.3
CHMP1A-205ENST00000548650 CCDC88AQ3V6T2 1871 aa23.14■■□□□ 1.29
CHMP1A-205ENST00000548650 PIP4K2AP48426 406 aaPredicted RBP23.14■■□□□ 1.29
CHMP1A-205ENST00000548650 PRR5LQ6MZQ0 368 aa23.14■■□□□ 1.29
CHMP1A-205ENST00000548650 C2CD5Q86YS7 1000 aa23.14■■□□□ 1.29
CHMP1A-205ENST00000548650 RNF181Q9P0P0 153 aa23.14■■□□□ 1.29
CHMP1A-205ENST00000548650 SNRPA1P09661 255 aaKnown RBP23.13■■□□□ 1.29
CHMP1A-205ENST00000548650 HSPA6P17066 643 aa23.13■■□□□ 1.29
CHMP1A-205ENST00000548650 DZIP3Q86Y13 1208 aaKnown RBP23.13■■□□□ 1.29
CHMP1A-205ENST00000548650 NMRK2Q9NPI5 230 aa23.13■■□□□ 1.29
CHMP1A-205ENST00000548650 RASSF7Q02833 373 aa23.12■■□□□ 1.29
CHMP1A-205ENST00000548650 FER1L6Q2WGJ9 1857 aa23.12■■□□□ 1.29
CHMP1A-205ENST00000548650 PLEKHF1Q96S99 279 aa23.12■■□□□ 1.29
CHMP1A-205ENST00000548650 NPM2Q86SE8 214 aaKnown RBP23.11■■□□□ 1.29
CHMP1A-205ENST00000548650 TTLL6Q8N841 843 aa23.11■■□□□ 1.29
CHMP1A-205ENST00000548650 H0YIN7 160 aa23.1■■□□□ 1.29
CHMP1A-205ENST00000548650 BRIP1Q9BX63 1249 aa23.1■■□□□ 1.29
CHMP1A-205ENST00000548650 NBPF26B4DH59 902 aa23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 PRELPP51888 382 aa23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 TAF7Q15545 349 aaPredicted RBP23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 NBPF10Q6P3W6 841 aaKnown RBP23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 CCDC24Q8N4L8 307 aa23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 NBPF15Q8N660 670 aa23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 CNBD1Q8NA66 436 aa23.09■■□□□ 1.29
CHMP1A-205ENST00000548650 SLX4Q8IY92 1834 aa23.08■■□□□ 1.29
CHMP1A-205ENST00000548650 DICER1Q9UPY3 1922 aaKnown RBP23.08■■□□□ 1.29
CHMP1A-205ENST00000548650 NEFMP07197 916 aa23.08■■□□□ 1.29
CHMP1A-205ENST00000548650 SETDB2Q96T68 719 aa23.08■■□□□ 1.29
CHMP1A-205ENST00000548650 ZC3H4Q9UPT8 1303 aaKnown RBP23.08■■□□□ 1.28
CHMP1A-205ENST00000548650 TOMM70O94826 608 aa23.07■■□□□ 1.28
CHMP1A-205ENST00000548650 PDE6BP35913 854 aa23.07■■□□□ 1.28
CHMP1A-205ENST00000548650 NFE2L2Q16236 605 aa23.07■■□□□ 1.28
CHMP1A-205ENST00000548650 MIS18AQ9NYP9 233 aa23.07■■□□□ 1.28
CHMP1A-205ENST00000548650 PDZRN3Q9UPQ7 1066 aa23.07■■□□□ 1.28
CHMP1A-205ENST00000548650 NFKBIEO00221 500 aa23.06■■□□□ 1.28
CHMP1A-205ENST00000548650 KDM2BQ8NHM5 1336 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms