RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 COL3A1P02461 1466 aaPredicted RBP17.09■□□□□ 0.33
RAPGEF3-216ENST00000547856 RAD51AP2Q09MP3 1159 aa17.08■□□□□ 0.33
RAPGEF3-216ENST00000547856 ADGRB2O60241 1585 aa17.08■□□□□ 0.33
RAPGEF3-216ENST00000547856 ABCC4O15439 1325 aa17.08■□□□□ 0.32
RAPGEF3-216ENST00000547856 USP27XA6NNY8 438 aa17.07■□□□□ 0.32
RAPGEF3-216ENST00000547856 CCDC192P0DO97 292 aa17.07■□□□□ 0.32
RAPGEF3-216ENST00000547856 MCCP23508 829 aa17.07■□□□□ 0.32
RAPGEF3-216ENST00000547856 ARHGAP45Q92619 1136 aa17.07■□□□□ 0.32
RAPGEF3-216ENST00000547856 ZSCAN22P10073 491 aaPredicted RBP17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 DNM1Q05193 864 aaKnown RBP17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 KRT24Q2M2I5 525 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 CKAP2LQ8IYA6 745 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 RILPL2Q969X0 211 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 ZNF446Q9NWS9 450 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 KIF13AQ9H1H9 1805 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 CYP2C19P33261 490 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 TMEM87AQ8NBN3 555 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 NEK11Q8NG66 645 aa17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 CACTINQ8WUQ7 758 aaKnown RBP17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 TRMT1Q9NXH9 659 aaKnown RBP17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 RPAP1Q9BWH6 1393 aaPredicted RBP17.06■□□□□ 0.32
RAPGEF3-216ENST00000547856 HDGFL2Q7Z4V5 671 aaPredicted RBP17.05■□□□□ 0.32
RAPGEF3-216ENST00000547856 RGS22Q8NE09 1264 aa17.05■□□□□ 0.32
RAPGEF3-216ENST00000547856 RSPH14Q9UHP6 348 aa17.05■□□□□ 0.32
RAPGEF3-216ENST00000547856 POLR3GO15318 223 aaPredicted RBP17.05■□□□□ 0.32
RAPGEF3-216ENST00000547856 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.05■□□□□ 0.32
RAPGEF3-216ENST00000547856 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
RAPGEF3-216ENST00000547856 SYT1P21579 422 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 ARID5BQ14865 1188 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 ESYT1Q9BSJ8 1104 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 TCHHQ07283 1943 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 NRXN3Q9Y4C0 1643 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 DLC1Q96QB1 1528 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 FBLN1P23142 703 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 TWISTNBQ3B726 338 aaPredicted RBP17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 ANKRD44Q8N8A2 993 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 FAM200AQ8TCP9 573 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 STX6O43752 255 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 PRKAR2BP31323 418 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 C8orf58Q8NAV2 365 aa17.04■□□□□ 0.32
RAPGEF3-216ENST00000547856 CCDC144BQ3MJ40 725 aa17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 CEP85Q6P2H3 762 aa17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 CCDC144CPQ8IYA2 1237 aa17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 SECISBP2LQ93073 1101 aaKnown RBP17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 FAM53CQ9NYF3 392 aa17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 BRPF1P55201 1214 aaPredicted RBP17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 SYTL4Q96C24 671 aaPredicted RBP17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 API5Q9BZZ5 524 aaKnown RBP17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 CLIP2Q9UDT6 1046 aa17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 MRVI1Q9Y6F6 885 aa17.03■□□□□ 0.32
RAPGEF3-216ENST00000547856 PIK3R4Q99570 1358 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 DIAPH1O60610 1272 aaKnown RBP17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 F13A1P00488 732 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 HMOX1P09601 288 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 PDE1AP54750 535 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 PTPN14Q15678 1187 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 ANO6Q4KMQ2 910 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 TSPYL1Q9H0U9 437 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 MBIPQ9NS73 344 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 PTCH1Q13635 1447 aa17.02■□□□□ 0.32
RAPGEF3-216ENST00000547856 METP08581 1390 aa17.02■□□□□ 0.31
RAPGEF3-216ENST00000547856 TYRO3Q06418 890 aa17.02■□□□□ 0.31
RAPGEF3-216ENST00000547856 CBX8Q9HC52 389 aa17.02■□□□□ 0.31
RAPGEF3-216ENST00000547856 ZNF75DP51815 510 aa17.01■□□□□ 0.31
RAPGEF3-216ENST00000547856 C10orf67Q8IYJ2 551 aa17.01■□□□□ 0.31
RAPGEF3-216ENST00000547856 KIF1BPQ96EK5 621 aa17.01■□□□□ 0.31
RAPGEF3-216ENST00000547856 PNPLA6Q8IY17 1366 aa17.01■□□□□ 0.31
RAPGEF3-216ENST00000547856 RTL1A6NKG5 1358 aa17■□□□□ 0.31
RAPGEF3-216ENST00000547856 ERCC6LQ2NKX8 1250 aa17■□□□□ 0.31
RAPGEF3-216ENST00000547856 ZNF428Q96B54 188 aa17■□□□□ 0.31
RAPGEF3-216ENST00000547856 PHACTR3Q96KR7 559 aa17■□□□□ 0.31
RAPGEF3-216ENST00000547856 ZKSCAN7Q9P0L1 754 aaPredicted RBP17■□□□□ 0.31
RAPGEF3-216ENST00000547856 TRIM66O15016 1216 aa17■□□□□ 0.31
RAPGEF3-216ENST00000547856 GYS2P54840 703 aa17■□□□□ 0.31
RAPGEF3-216ENST00000547856 BMS1Q14692 1282 aaKnown RBP16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 MAP3K11Q16584 847 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 SYT10Q6XYQ8 523 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 ERO1AQ96HE7 468 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 MEIS3Q99687 375 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 SMC3Q9UQE7 1217 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 RGS12O14924 1447 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 VPS37CA5D8V6 355 aaPredicted RBP16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 KRBA2Q6ZNG9 492 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 TXNDC2Q86VQ3 553 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 TEX2Q8IWB9 1127 aa16.99■□□□□ 0.31
RAPGEF3-216ENST00000547856 MAP2P11137 1827 aaKnown RBP16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 LIG1P18858 919 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 LRRN4CLQ8ND94 238 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 EXOC6BQ9Y2D4 811 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 ATP7BP35670 1465 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 CPA1P15085 419 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 FAM173BQ6P4H8 233 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 RPAP2Q8IXW5 612 aaPredicted RBP16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 NUP62CLQ9H1M0 184 aa16.98■□□□□ 0.31
RAPGEF3-216ENST00000547856 SLU7O95391 586 aaKnown RBP16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 NFATC2IPQ8NCF5 419 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 IL25Q9H293 177 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 RASSF4Q9H2L5 321 aa16.97■□□□□ 0.31
RAPGEF3-216ENST00000547856 ESF1Q9H501 851 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms