RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 RGPD8O14715 1765 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-239ENST00000545694 KIF24Q5T7B8 1368 aa8.09□□□□□ -1.12
SYNE1-239ENST00000545694 USP31Q70CQ4 1352 aa8.09□□□□□ -1.12
SYNE1-239ENST00000545694 ACEP12821 1306 aa8.08□□□□□ -1.12
SYNE1-239ENST00000545694 TTC21BQ7Z4L5 1316 aa8.08□□□□□ -1.12
SYNE1-239ENST00000545694 IQSEC2Q5JU85 1478 aa8.08□□□□□ -1.12
SYNE1-239ENST00000545694 APAF1O14727 1248 aa8.08□□□□□ -1.12
SYNE1-239ENST00000545694 CT47B1P0C2W7 299 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-239ENST00000545694 SLFN5Q08AF3 891 aa8.08□□□□□ -1.12
SYNE1-239ENST00000545694 ADGRL3Q9HAR2 1447 aa8.08□□□□□ -1.12
SYNE1-239ENST00000545694 OVOS2A0A0J9YW53 1432 aa8.07□□□□□ -1.12
SYNE1-239ENST00000545694 OVOS2Q6IE36 1432 aa8.07□□□□□ -1.12
SYNE1-239ENST00000545694 U2AF1L5P0DN76 240 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-239ENST00000545694 TNNT2P45379 298 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-239ENST00000545694 U2AF1Q01081 240 aaKnown RBP eCLIP8.07□□□□□ -1.12
SYNE1-239ENST00000545694 RBM26Q5T8P6 1007 aaKnown RBP8.07□□□□□ -1.12
SYNE1-239ENST00000545694 DUSP27Q5VZP5 1158 aa8.07□□□□□ -1.12
SYNE1-239ENST00000545694 TRIM67Q6ZTA4 783 aa8.07□□□□□ -1.12
SYNE1-239ENST00000545694 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.07□□□□□ -1.12
SYNE1-239ENST00000545694 POLKQ9UBT6 870 aa8.07□□□□□ -1.12
SYNE1-239ENST00000545694 IL16Q14005 1332 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 MAPK8IP3Q9UPT6 1336 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.06□□□□□ -1.12
SYNE1-239ENST00000545694 RRP1P56182 461 aaKnown RBP8.06□□□□□ -1.12
SYNE1-239ENST00000545694 CALD1Q05682 793 aaKnown RBP8.06□□□□□ -1.12
SYNE1-239ENST00000545694 ZNF787Q6DD87 383 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 LIAT1Q6ZQX7 453 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 WWC1Q8IX03 1113 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 TCP11L2Q8N4U5 519 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 NGDNQ8NEJ9 315 aaKnown RBP8.06□□□□□ -1.12
SYNE1-239ENST00000545694 PXYLP1Q8TE99 480 aa8.06□□□□□ -1.12
SYNE1-239ENST00000545694 OATP04181 439 aa8.05□□□□□ -1.12
SYNE1-239ENST00000545694 PUS10Q3MIT2 529 aaKnown RBP8.05□□□□□ -1.12
SYNE1-239ENST00000545694 SPRYD7Q5W111 196 aa8.05□□□□□ -1.12
SYNE1-239ENST00000545694 ANKLE1Q8NAG6 615 aa8.05□□□□□ -1.12
SYNE1-239ENST00000545694 MYH16Q9H6N6 1097 aa8.05□□□□□ -1.12
SYNE1-239ENST00000545694 KIF1AQ12756 1690 aa8.05□□□□□ -1.12
SYNE1-239ENST00000545694 DCCP43146 1447 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 NR1I2O75469 434 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 ADH1BP00325 375 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 FECHP22830 423 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 LMOD3Q0VAK6 560 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 AAMPQ13685 434 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 NME9Q86XW9 330 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 CCDC146Q8IYE0 955 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 PLEKHF1Q96S99 279 aa8.04□□□□□ -1.12
SYNE1-239ENST00000545694 SALL2Q9Y467 1007 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-239ENST00000545694 U2SURPO15042 1029 aaKnown RBP8.03□□□□□ -1.12
SYNE1-239ENST00000545694 ZNF598Q86UK7 904 aaKnown RBP8.03□□□□□ -1.12
SYNE1-239ENST00000545694 SCUBE3Q8IX30 993 aa8.03□□□□□ -1.12
SYNE1-239ENST00000545694 PIK3C2AO00443 1686 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 SBNO1A3KN83 1393 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 IL13P35225 146 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 TMPOP42166 694 aaKnown RBP8.02□□□□□ -1.13
SYNE1-239ENST00000545694 HIC1Q14526 733 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 METTL3Q86U44 580 aaKnown RBP8.02□□□□□ -1.13
SYNE1-239ENST00000545694 NLRP7Q8WX94 980 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 ZNF428Q96B54 188 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 SLC6A16Q9GZN6 736 aa8.02□□□□□ -1.13
SYNE1-239ENST00000545694 RTL1A6NKG5 1358 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 FLT4P35916 1363 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 PHRF1Q9P1Y6 1649 aaKnown RBP8.01□□□□□ -1.13
SYNE1-239ENST00000545694 TESPA1A2RU30 521 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-239ENST00000545694 TNFRSF10AO00220 468 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 MS4A1P11836 297 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 PLA2G2CQ5R387 149 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 ZNF697Q5TEC3 545 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 RSPH6AQ9H0K4 717 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 C19orf44Q9H6X5 657 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 MST1RQ04912 1400 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 DLG5Q8TDM6 1919 aa8.01□□□□□ -1.13
SYNE1-239ENST00000545694 RGPD1P0DJD0 1748 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 ARHGEF10O15013 1369 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 HAP1P54257 671 aaPredicted RBP8□□□□□ -1.13
SYNE1-239ENST00000545694 PDE3AQ14432 1141 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 NFE2L2Q16236 605 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 PKDCCQ504Y2 493 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 KCNH5Q8NCM2 988 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 EMILIN1Q9Y6C2 1016 aa8□□□□□ -1.13
SYNE1-239ENST00000545694 MARF1Q9Y4F3 1742 aaKnown RBP8□□□□□ -1.13
SYNE1-239ENST00000545694 GNPATO15228 680 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 PPM1GO15355 546 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-239ENST00000545694 RIPK4P57078 832 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 PROSER2Q86WR7 435 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-239ENST00000545694 RDH13Q8NBN7 331 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 PMFBP1Q8TBY8 1022 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 CCDC136Q96JN2 1154 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 SPSB2Q99619 263 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 CACNA1FO60840 1977 aa7.99□□□□□ -1.13
SYNE1-239ENST00000545694 PRKAR2BP31323 418 aa7.98□□□□□ -1.13
SYNE1-239ENST00000545694 MYT1Q01538 1121 aa7.98□□□□□ -1.13
SYNE1-239ENST00000545694 SMYD5Q6GMV2 418 aa7.98□□□□□ -1.13
SYNE1-239ENST00000545694 C14orf37Q86TY3 774 aa7.98□□□□□ -1.13
SYNE1-239ENST00000545694 PEAK1Q9H792 1746 aa7.98□□□□□ -1.13
SYNE1-239ENST00000545694 KDRP35968 1356 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 LTN1O94822 1766 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 DDX11L8A8MPP1 907 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 GDF9O60383 454 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 DGAT1O75907 488 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 BRPF1P55201 1214 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms