RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 CCDC183Q5T5S1 534 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 FOXD4L5Q5VV16 416 aaPredicted RBP10.57□□□□□ -0.72
TDP1-204ENST00000545686 TSHZ3Q63HK5 1081 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 SSH3Q8TE77 659 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 FOXD4L4Q8WXT5 416 aaPredicted RBP10.57□□□□□ -0.72
TDP1-204ENST00000545686 RNF214Q8ND24 703 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 MIS18AQ9NYP9 233 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 DIP2AQ14689 1571 aa10.56□□□□□ -0.72
TDP1-204ENST00000545686 FOXO3O43524 673 aa10.56□□□□□ -0.72
TDP1-204ENST00000545686 PTMAP06454 111 aaKnown RBP10.56□□□□□ -0.72
TDP1-204ENST00000545686 LRRFIP2Q9Y608 721 aaKnown RBP10.56□□□□□ -0.72
TDP1-204ENST00000545686 MED1Q15648 1581 aaPredicted RBP10.56□□□□□ -0.72
TDP1-204ENST00000545686 USP48Q86UV5 1035 aa10.56□□□□□ -0.72
TDP1-204ENST00000545686 ATP6V1DQ9Y5K8 247 aa10.56□□□□□ -0.72
TDP1-204ENST00000545686 MAP3K5Q99683 1374 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 GNAT3A8MTJ3 354 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 UBTFL1P0CB47 393 aaPredicted RBP10.55□□□□□ -0.72
TDP1-204ENST00000545686 TTC14Q96N46 770 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 UPF3BQ9BZI7 483 aaKnown RBP10.55□□□□□ -0.72
TDP1-204ENST00000545686 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.55□□□□□ -0.72
TDP1-204ENST00000545686 LTN1O94822 1766 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 SGSM2O43147 1006 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 ZSCAN22P10073 491 aaPredicted RBP10.55□□□□□ -0.72
TDP1-204ENST00000545686 UBE2HP62256 183 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 POLA2Q14181 598 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 UNC5CLQ8IV45 518 aa10.55□□□□□ -0.72
TDP1-204ENST00000545686 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.55□□□□□ -0.72
TDP1-204ENST00000545686 USP42Q9H9J4 1324 aaKnown RBP10.54□□□□□ -0.72
TDP1-204ENST00000545686 LMO7Q8WWI1 1683 aa10.54□□□□□ -0.72
TDP1-204ENST00000545686 GADD45BO75293 160 aaPredicted RBP10.54□□□□□ -0.72
TDP1-204ENST00000545686 PI4K2BQ8TCG2 481 aa10.54□□□□□ -0.72
TDP1-204ENST00000545686 PIBF1Q8WXW3 757 aa10.54□□□□□ -0.72
TDP1-204ENST00000545686 PRIMPOLQ96LW4 560 aa10.54□□□□□ -0.72
TDP1-204ENST00000545686 EYA1Q99502 592 aa10.54□□□□□ -0.72
TDP1-204ENST00000545686 USP44Q9H0E7 712 aa10.54□□□□□ -0.72
TDP1-204ENST00000545686 NOL8Q76FK4 1167 aaKnown RBP10.53□□□□□ -0.72
TDP1-204ENST00000545686 FAM13BQ9NYF5 915 aa10.53□□□□□ -0.72
TDP1-204ENST00000545686 HMGN5P82970 282 aaKnown RBP10.53□□□□□ -0.72
TDP1-204ENST00000545686 RBM10P98175 930 aaKnown RBP10.53□□□□□ -0.72
TDP1-204ENST00000545686 CNTROBQ8N137 903 aa10.53□□□□□ -0.72
TDP1-204ENST00000545686 KIF1BPQ96EK5 621 aa10.53□□□□□ -0.72
TDP1-204ENST00000545686 CHMP4AQ9BY43 222 aa10.53□□□□□ -0.72
TDP1-204ENST00000545686 LIMCH1Q9UPQ0 1083 aa10.53□□□□□ -0.72
TDP1-204ENST00000545686 SNX14Q9Y5W7 946 aa10.53□□□□□ -0.72
TDP1-204ENST00000545686 STX6O43752 255 aa10.52□□□□□ -0.72
TDP1-204ENST00000545686 FAM69CQ0P6D2 419 aa10.52□□□□□ -0.72
TDP1-204ENST00000545686 HSP90AB4PQ58FF6 505 aa10.52□□□□□ -0.72
TDP1-204ENST00000545686 MYRIPQ8NFW9 859 aa10.52□□□□□ -0.72
TDP1-204ENST00000545686 LSG1Q9H089 658 aaKnown RBP10.52□□□□□ -0.72
TDP1-204ENST00000545686 PDIA4P13667 645 aaKnown RBP10.52□□□□□ -0.73
TDP1-204ENST00000545686 AMPHP49418 695 aa10.52□□□□□ -0.73
TDP1-204ENST00000545686 RHPN1Q8TCX5 695 aa10.52□□□□□ -0.73
TDP1-204ENST00000545686 IL25Q9H293 177 aa10.52□□□□□ -0.73
TDP1-204ENST00000545686 ESF1Q9H501 851 aaKnown RBP10.52□□□□□ -0.73
TDP1-204ENST00000545686 TTC41PQ6P2S7 1318 aa10.52□□□□□ -0.73
TDP1-204ENST00000545686 F13A1P00488 732 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 GTF2F1P35269 517 aaKnown RBP eCLIP10.51□□□□□ -0.73
TDP1-204ENST00000545686 TAF7Q15545 349 aaPredicted RBP10.51□□□□□ -0.73
TDP1-204ENST00000545686 GDPD2Q9HCC8 539 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 ANKARQ7Z5J8 1434 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 TPM3P06753 285 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 HOXB7P09629 217 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 AK2P54819 239 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 IL1RAPL2Q9NP60 686 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 SPTLC3Q9NUV7 552 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 SMC3Q9UQE7 1217 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 CNPY2Q9Y2B0 182 aa10.51□□□□□ -0.73
TDP1-204ENST00000545686 PHRF1Q9P1Y6 1649 aaKnown RBP10.51□□□□□ -0.73
TDP1-204ENST00000545686 SLIT1O75093 1534 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 SURF6O75683 361 aaKnown RBP10.5□□□□□ -0.73
TDP1-204ENST00000545686 SYT1P21579 422 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 MLECQ14165 292 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 PPP1R42Q7Z4L9 355 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 NUTM1Q86Y26 1132 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 RUFY2Q8WXA3 655 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 ZSCAN31Q96LW9 406 aaPredicted RBP10.5□□□□□ -0.73
TDP1-204ENST00000545686 TM6SF1Q9BZW5 370 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 SH2B1Q9NRF2 756 aaPredicted RBP10.5□□□□□ -0.73
TDP1-204ENST00000545686 USP25Q9UHP3 1055 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 KIF13AQ9H1H9 1805 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 ADCY5O95622 1261 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 HDGFL1Q5TGJ6 251 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 RUFY3Q7L099 469 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 KCNB2Q92953 911 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 FUCA2Q9BTY2 467 aa10.5□□□□□ -0.73
TDP1-204ENST00000545686 CEMIPQ8WUJ3 1361 aa10.49□□□□□ -0.73
TDP1-204ENST00000545686 KDM4AO75164 1064 aa10.49□□□□□ -0.73
TDP1-204ENST00000545686 GLRX3O76003 335 aaKnown RBP10.49□□□□□ -0.73
TDP1-204ENST00000545686 NOLC1Q14978 699 aaKnown RBP eCLIP10.49□□□□□ -0.73
TDP1-204ENST00000545686 VPS53Q5VIR6 699 aa10.49□□□□□ -0.73
TDP1-204ENST00000545686 MYH15Q9Y2K3 1946 aa10.49□□□□□ -0.73
TDP1-204ENST00000545686 SOX12O15370 315 aa10.49□□□□□ -0.73
TDP1-204ENST00000545686 IL17REQ8NFR9 667 aa10.49□□□□□ -0.73
TDP1-204ENST00000545686 SRGAP3O43295 1099 aa10.48□□□□□ -0.73
TDP1-204ENST00000545686 HCLS1P14317 486 aaPredicted RBP10.48□□□□□ -0.73
TDP1-204ENST00000545686 HOXC9P31274 260 aa10.48□□□□□ -0.73
TDP1-204ENST00000545686 SMAP1Q8IYB5 467 aaPredicted RBP10.48□□□□□ -0.73
TDP1-204ENST00000545686 HYPKQ9NX55 129 aa10.48□□□□□ -0.73
TDP1-204ENST00000545686 ARHGAP23Q9P227 1491 aa10.48□□□□□ -0.73
TDP1-204ENST00000545686 ADGRL3Q9HAR2 1447 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms