RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 KDM2AQ9Y2K7 1162 aa7.05□□□□□ -1.28
NPIPB3-211ENST00000542953 C5P01031 1676 aa7.05□□□□□ -1.28
NPIPB3-211ENST00000542953 KCPQ6ZWJ8 1503 aa7.05□□□□□ -1.28
NPIPB3-211ENST00000542953 USP31Q70CQ4 1352 aa7.05□□□□□ -1.28
NPIPB3-211ENST00000542953 TOGARAM1Q9Y4F4 1720 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 KDM2BQ8NHM5 1336 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 NSD3Q9BZ95 1437 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 TK2O00142 265 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 TGFB2P61812 414 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 C9orf131Q5VYM1 1079 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 AMIGO3Q86WK7 504 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 ANKRD24Q8TF21 1146 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 MFRPQ9BY79 579 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 KIF13BQ9NQT8 1826 aa7.04□□□□□ -1.28
NPIPB3-211ENST00000542953 CENPJQ9HC77 1338 aaPredicted RBP7.03□□□□□ -1.28
NPIPB3-211ENST00000542953 TNRC6CQ9HCJ0 1690 aaKnown RBP7.03□□□□□ -1.28
NPIPB3-211ENST00000542953 SSFA2P28290 1259 aa7.03□□□□□ -1.28
NPIPB3-211ENST00000542953 KAT6BQ8WYB5 2073 aa7.03□□□□□ -1.28
NPIPB3-211ENST00000542953 KIAA1210Q9ULL0 1709 aa7.03□□□□□ -1.28
NPIPB3-211ENST00000542953 C4BP0C0L5 1744 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 PKD1L3Q7Z443 1732 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 RGS19P49795 217 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 ARHGAP27Q6ZUM4 889 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 TMC2Q8TDI7 906 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 RRAGCQ9HB90 399 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 BCS1LQ9Y276 419 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 STK24Q9Y6E0 443 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 PALLDQ8WX93 1383 aa7.02□□□□□ -1.29
NPIPB3-211ENST00000542953 ZC3H4Q9UPT8 1303 aaKnown RBP7.01□□□□□ -1.29
NPIPB3-211ENST00000542953 TAF1LQ8IZX4 1826 aa7.01□□□□□ -1.29
NPIPB3-211ENST00000542953 UBR3Q6ZT12 1888 aa7.01□□□□□ -1.29
NPIPB3-211ENST00000542953 FAM208AQ9UK61 1670 aaKnown RBP7.01□□□□□ -1.29
NPIPB3-211ENST00000542953 FOXN1O15353 648 aa7.01□□□□□ -1.29
NPIPB3-211ENST00000542953 AK7Q96M32 723 aa7.01□□□□□ -1.29
NPIPB3-211ENST00000542953 MMP10P09238 476 aa7□□□□□ -1.29
NPIPB3-211ENST00000542953 ZCRB1Q8TBF4 217 aaKnown RBP7□□□□□ -1.29
NPIPB3-211ENST00000542953 DCAF5Q96JK2 942 aa7□□□□□ -1.29
NPIPB3-211ENST00000542953 MEGF6O75095 1541 aa7□□□□□ -1.29
NPIPB3-211ENST00000542953 KDM6AO15550 1401 aaPredicted RBP7□□□□□ -1.29
NPIPB3-211ENST00000542953 KTN1Q86UP2 1357 aaKnown RBP6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 BRCA1P38398 1863 aaKnown RBP6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 A0A0G2JLW4 131 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 HRO43593 1189 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 FCHSD2O94868 740 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 PHF14O94880 888 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 KCNA3P22001 575 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 CTCFP49711 727 aaPredicted RBP6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 MLLT1Q03111 559 aaPredicted RBP6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 NBPF1Q3BBV0 1214 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 IP6K1Q92551 441 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 ABHD8Q96I13 439 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 RNF181Q9P0P0 153 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 ARFGEF1Q9Y6D6 1849 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 CGNL1Q0VF96 1302 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 EVC2Q86UK5 1308 aa6.99□□□□□ -1.29
NPIPB3-211ENST00000542953 SBNO2Q9Y2G9 1366 aa6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 LTN1O94822 1766 aa6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 N4BP2Q86UW6 1770 aaPredicted RBP6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 STK25O00506 426 aa6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 VEGFAP15692 232 aaPredicted RBP6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 DPEP1P16444 411 aa6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 SMIM5Q71RC9 77 aa6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 SMARCC1Q92922 1105 aaPredicted RBP6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 MON2Q7Z3U7 1717 aa6.98□□□□□ -1.29
NPIPB3-211ENST00000542953 CNTNAP1P78357 1384 aa6.97□□□□□ -1.29
NPIPB3-211ENST00000542953 TNRC18O15417 2968 aaPredicted RBP6.97□□□□□ -1.29
NPIPB3-211ENST00000542953 GLTPD2A6NH11 291 aa6.97□□□□□ -1.29
NPIPB3-211ENST00000542953 RGS20O76081 388 aa6.97□□□□□ -1.29
NPIPB3-211ENST00000542953 WBP1LQ9NX94 342 aa6.97□□□□□ -1.29
NPIPB3-211ENST00000542953 NME9Q86XW9 330 aa6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 NLGN1Q8N2Q7 840 aa6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 LINC00116Q8NCU8 138 aa6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 PTCD2Q8WV60 388 aaKnown RBP6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 CCDC87Q9NVE4 849 aa6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 CD163L1Q9NR16 1453 aa6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 MAP2P11137 1827 aaKnown RBP6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 C4AP0C0L4 1744 aa6.96□□□□□ -1.3
NPIPB3-211ENST00000542953 POTECB2RU33 542 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 GNPATO15228 680 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 LBX1P52954 281 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 TMF1P82094 1093 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 DALRD3Q5D0E6 543 aaKnown RBP6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 AIDAQ96BJ3 306 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 PIM2Q9P1W9 311 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 MKRN1Q9UHC7 482 aaKnown RBP6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 PCDH11XQ9BZA7 1347 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 PCDH11YQ9BZA8 1340 aa6.95□□□□□ -1.3
NPIPB3-211ENST00000542953 EDC4Q6P2E9 1401 aaKnown RBP6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 PDE4DIPQ5VU43 2346 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 LOC102724428A0A0B4J2F2 783 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 HSPA8P11142 646 aaKnown RBP6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 HOXC9P31274 260 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 SIK1P57059 783 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 PPP4R3BQ5MIZ7 849 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 DMRTA1Q5VZB9 504 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 MPRIPQ6WCQ1 1025 aa6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 KCTD12Q96CX2 325 aaKnown RBP6.94□□□□□ -1.3
NPIPB3-211ENST00000542953 MAP3K19Q56UN5 1328 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms