RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RFC4P35249 363 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 ITPK1Q13572 414 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 GSE1Q14687 1217 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 MON2Q7Z3U7 1717 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 ARHGEF1Q92888 912 aaKnown RBP6.8□□□□□ -1.32
LIMS1-214ENST00000542845 DCAF5Q96JK2 942 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 CREBZFQ9NS37 354 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 RTCBQ9Y3I0 505 aaKnown RBP6.8□□□□□ -1.32
LIMS1-214ENST00000542845 RAB3GAP2Q9H2M9 1393 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 MAP3K19Q56UN5 1328 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 PCDH11XQ9BZA7 1347 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 PCDH11YQ9BZA8 1340 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 C10orf71Q711Q0 1435 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 VEGFBP49765 207 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 DPY19L2Q6NUT2 758 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 HS6ST3Q8IZP7 471 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 SLC12A5Q9H2X9 1139 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 ASAP1Q9ULH1 1129 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 C4AP0C0L4 1744 aa6.79□□□□□ -1.32
LIMS1-214ENST00000542845 CYP27B1O15528 508 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 POTEJP0CG39 1038 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 GYS1P13807 737 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 LMNB1P20700 586 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 RRS1Q15050 365 aaKnown RBP6.78□□□□□ -1.32
LIMS1-214ENST00000542845 DCAF8Q5TAQ9 597 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 COG3Q96JB2 828 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 TMOD3Q9NYL9 352 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 SBNO2Q9Y2G9 1366 aa6.78□□□□□ -1.32
LIMS1-214ENST00000542845 CGNL1Q0VF96 1302 aa6.77□□□□□ -1.32
LIMS1-214ENST00000542845 POTECB2RU33 542 aa6.77□□□□□ -1.33
LIMS1-214ENST00000542845 GRM1Q13255 1194 aa6.77□□□□□ -1.33
LIMS1-214ENST00000542845 ZNF579Q8NAF0 562 aaKnown RBP6.77□□□□□ -1.33
LIMS1-214ENST00000542845 TERF2IPQ9NYB0 399 aa6.77□□□□□ -1.33
LIMS1-214ENST00000542845 TIAM2Q8IVF5 1701 aa6.76□□□□□ -1.33
LIMS1-214ENST00000542845 MAP2P11137 1827 aaKnown RBP6.76□□□□□ -1.33
LIMS1-214ENST00000542845 HSPA8P11142 646 aaKnown RBP6.76□□□□□ -1.33
LIMS1-214ENST00000542845 WBP1LQ9NX94 342 aa6.76□□□□□ -1.33
LIMS1-214ENST00000542845 SRP68Q9UHB9 627 aaKnown RBP6.76□□□□□ -1.33
LIMS1-214ENST00000542845 CNTNAP1P78357 1384 aa6.76□□□□□ -1.33
LIMS1-214ENST00000542845 SMG6Q86US8 1419 aaKnown RBP6.76□□□□□ -1.33
LIMS1-214ENST00000542845 TMEM88BA6NKF7 163 aa6.75□□□□□ -1.33
LIMS1-214ENST00000542845 DEFB115Q30KQ5 88 aa6.75□□□□□ -1.33
LIMS1-214ENST00000542845 EAPPQ56P03 285 aaPredicted RBP6.75□□□□□ -1.33
LIMS1-214ENST00000542845 ATG3Q9NT62 314 aa6.75□□□□□ -1.33
LIMS1-214ENST00000542845 EDC4Q6P2E9 1401 aaKnown RBP6.75□□□□□ -1.33
LIMS1-214ENST00000542845 CD163L1Q9NR16 1453 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 VIRMAQ69YN4 1812 aaKnown RBP6.74□□□□□ -1.33
LIMS1-214ENST00000542845 STK25O00506 426 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 GALR2O43603 387 aaPredicted RBP6.74□□□□□ -1.33
LIMS1-214ENST00000542845 RPS6KA4O75676 772 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 DDNO94850 711 aaPredicted RBP6.74□□□□□ -1.33
LIMS1-214ENST00000542845 RGS19P49795 217 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 DDR1Q08345 913 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 ERFEQ4G0M1 354 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 HSP90AB2PQ58FF8 381 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 FAM212AQ96EL1 285 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 BEGAINQ9BUH8 593 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 TSKSQ9UJT2 592 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 SPG7Q9UQ90 795 aa6.74□□□□□ -1.33
LIMS1-214ENST00000542845 ZC3H4Q9UPT8 1303 aaKnown RBP6.74□□□□□ -1.33
LIMS1-214ENST00000542845 A0A1W2PP64 1363 aa6.73□□□□□ -1.33
LIMS1-214ENST00000542845 ROCK2O75116 1388 aaKnown RBP6.73□□□□□ -1.33
LIMS1-214ENST00000542845 RIOK3O14730 519 aaKnown RBP6.73□□□□□ -1.33
LIMS1-214ENST00000542845 PPM1GO15355 546 aaPredicted RBP6.73□□□□□ -1.33
LIMS1-214ENST00000542845 MAP2K1Q02750 393 aaPredicted RBP6.73□□□□□ -1.33
LIMS1-214ENST00000542845 TTLL6Q8N841 843 aa6.73□□□□□ -1.33
LIMS1-214ENST00000542845 ABT1Q9ULW3 272 aaKnown RBP6.73□□□□□ -1.33
LIMS1-214ENST00000542845 WDR33Q9C0J8 1336 aaKnown RBP6.73□□□□□ -1.33
LIMS1-214ENST00000542845 NFKBIEO00221 500 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 C21orf2O43822 256 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 PTCD1O75127 700 aaKnown RBP6.72□□□□□ -1.33
LIMS1-214ENST00000542845 ZPR1O75312 459 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 RC3H1Q5TC82 1133 aaKnown RBP6.72□□□□□ -1.33
LIMS1-214ENST00000542845 C2CD5Q86YS7 1000 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 L3MBTL2Q969R5 705 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 ZNF622Q969S3 477 aaKnown RBP eCLIP6.72□□□□□ -1.33
LIMS1-214ENST00000542845 RNF25Q96BH1 459 aaPredicted RBP6.72□□□□□ -1.33
LIMS1-214ENST00000542845 SLC4A9Q96Q91 983 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 GGNBP2Q9H3C7 697 aa6.72□□□□□ -1.33
LIMS1-214ENST00000542845 KDM6AO15550 1401 aaPredicted RBP6.71□□□□□ -1.34
LIMS1-214ENST00000542845 H0YIN7 160 aa6.71□□□□□ -1.34
LIMS1-214ENST00000542845 POLRMTO00411 1230 aaKnown RBP6.71□□□□□ -1.34
LIMS1-214ENST00000542845 NKX1-1Q15270 411 aaPredicted RBP6.71□□□□□ -1.34
LIMS1-214ENST00000542845 USPL1Q5W0Q7 1092 aa6.71□□□□□ -1.34
LIMS1-214ENST00000542845 IFNL2Q8IZJ0 200 aa6.71□□□□□ -1.34
LIMS1-214ENST00000542845 MCOLN1Q9GZU1 580 aa6.71□□□□□ -1.34
LIMS1-214ENST00000542845 PASKQ96RG2 1323 aa6.71□□□□□ -1.34
LIMS1-214ENST00000542845 MYH14Q7Z406 1995 aaKnown RBP6.7□□□□□ -1.34
LIMS1-214ENST00000542845 ITGBL1O95965 494 aaPredicted RBP6.7□□□□□ -1.34
LIMS1-214ENST00000542845 SERPINB2P05120 415 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 PHKG2P15735 406 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 TM4SF1P30408 202 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 CRKLP46109 303 aaKnown RBP6.7□□□□□ -1.34
LIMS1-214ENST00000542845 NEUROD1Q13562 356 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 DGKZQ13574 1117 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 BICDL1Q6ZP65 573 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 LDHDQ86WU2 507 aa6.7□□□□□ -1.34
LIMS1-214ENST00000542845 AFDNP55196 1824 aaKnown RBP6.7□□□□□ -1.34
LIMS1-214ENST00000542845 USP42Q9H9J4 1324 aaKnown RBP6.7□□□□□ -1.34
LIMS1-214ENST00000542845 DICER1Q9UPY3 1922 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms