RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 MYH14Q7Z406 1995 aaKnown RBP13.76□□□□□ -0.21
CDCA3-208ENST00000540683 UBR2Q8IWV8 1755 aa13.76□□□□□ -0.21
CDCA3-208ENST00000540683 KCPQ6ZWJ8 1503 aa13.75□□□□□ -0.21
CDCA3-208ENST00000540683 COL15A1P39059 1388 aa13.75□□□□□ -0.21
CDCA3-208ENST00000540683 HEG1Q9ULI3 1381 aa13.75□□□□□ -0.21
CDCA3-208ENST00000540683 SOS1Q07889 1333 aaPredicted RBP13.75□□□□□ -0.21
CDCA3-208ENST00000540683 INTS5Q6P9B9 1019 aaKnown RBP13.75□□□□□ -0.21
CDCA3-208ENST00000540683 IL17REQ8NFR9 667 aa13.75□□□□□ -0.21
CDCA3-208ENST00000540683 PDZRN3Q9UPQ7 1066 aa13.75□□□□□ -0.21
CDCA3-208ENST00000540683 C4AP0C0L4 1744 aa13.75□□□□□ -0.21
CDCA3-208ENST00000540683 KIF13BQ9NQT8 1826 aa13.74□□□□□ -0.21
CDCA3-208ENST00000540683 HOXD11P31277 338 aaPredicted RBP13.74□□□□□ -0.21
CDCA3-208ENST00000540683 ZNF784Q8NCA9 323 aaPredicted RBP13.74□□□□□ -0.21
CDCA3-208ENST00000540683 UTRNP46939 3433 aa13.74□□□□□ -0.21
CDCA3-208ENST00000540683 C10orf71Q711Q0 1435 aa13.73□□□□□ -0.21
CDCA3-208ENST00000540683 GOLGB1Q14789 3259 aaKnown RBP13.73□□□□□ -0.21
CDCA3-208ENST00000540683 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
CDCA3-208ENST00000540683 IL6STP40189 918 aaPredicted RBP13.73□□□□□ -0.21
CDCA3-208ENST00000540683 LMOD3Q0VAK6 560 aa13.73□□□□□ -0.21
CDCA3-208ENST00000540683 SIPA1L3O60292 1781 aaPredicted RBP13.73□□□□□ -0.21
CDCA3-208ENST00000540683 RGL2O15211 777 aa13.72□□□□□ -0.21
CDCA3-208ENST00000540683 SNRPA1P09661 255 aaKnown RBP13.72□□□□□ -0.21
CDCA3-208ENST00000540683 YBX3P16989 372 aaKnown RBP eCLIP13.72□□□□□ -0.21
CDCA3-208ENST00000540683 TAF7Q15545 349 aaPredicted RBP13.72□□□□□ -0.21
CDCA3-208ENST00000540683 PHACTR3Q96KR7 559 aa13.72□□□□□ -0.21
CDCA3-208ENST00000540683 CANXP27824 592 aaKnown RBP13.71□□□□□ -0.21
CDCA3-208ENST00000540683 FKBP8Q14318 412 aa13.71□□□□□ -0.21
CDCA3-208ENST00000540683 USPL1Q5W0Q7 1092 aa13.71□□□□□ -0.21
CDCA3-208ENST00000540683 ZNF496Q96IT1 587 aaPredicted RBP13.71□□□□□ -0.21
CDCA3-208ENST00000540683 PIM2Q9P1W9 311 aa13.71□□□□□ -0.21
CDCA3-208ENST00000540683 ZNF652Q9Y2D9 606 aa13.71□□□□□ -0.21
CDCA3-208ENST00000540683 ZBTB1Q9Y2K1 713 aa13.71□□□□□ -0.21
CDCA3-208ENST00000540683 MYBBP1AQ9BQG0 1328 aaKnown RBP13.7□□□□□ -0.22
CDCA3-208ENST00000540683 TM4SF1P30408 202 aa13.7□□□□□ -0.22
CDCA3-208ENST00000540683 EIF5P55010 431 aaKnown RBP13.7□□□□□ -0.22
CDCA3-208ENST00000540683 SMIM5Q71RC9 77 aa13.7□□□□□ -0.22
CDCA3-208ENST00000540683 PXDNLA1KZ92 1463 aa13.69□□□□□ -0.22
CDCA3-208ENST00000540683 NPHP1O15259 732 aa13.69□□□□□ -0.22
CDCA3-208ENST00000540683 NFE2L2Q16236 605 aa13.69□□□□□ -0.22
CDCA3-208ENST00000540683 DALRD3Q5D0E6 543 aaKnown RBP13.69□□□□□ -0.22
CDCA3-208ENST00000540683 SRP68Q9UHB9 627 aaKnown RBP13.69□□□□□ -0.22
CDCA3-208ENST00000540683 POLRMTO00411 1230 aaKnown RBP13.68□□□□□ -0.22
CDCA3-208ENST00000540683 GIGYF1O75420 1035 aaPredicted RBP13.68□□□□□ -0.22
CDCA3-208ENST00000540683 WDR43Q15061 677 aaKnown RBP eCLIP13.68□□□□□ -0.22
CDCA3-208ENST00000540683 CLEC4GQ6UXB4 293 aa13.68□□□□□ -0.22
CDCA3-208ENST00000540683 BABAM1Q9NWV8 329 aa13.68□□□□□ -0.22
CDCA3-208ENST00000540683 BCS1LQ9Y276 419 aa13.68□□□□□ -0.22
CDCA3-208ENST00000540683 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
CDCA3-208ENST00000540683 MCM10Q7L590 875 aa13.67□□□□□ -0.22
CDCA3-208ENST00000540683 SETDB2Q96T68 719 aa13.67□□□□□ -0.22
CDCA3-208ENST00000540683 ZNF330Q9Y3S2 320 aaPredicted RBP13.67□□□□□ -0.22
CDCA3-208ENST00000540683 CARMIL3Q8ND23 1372 aa13.67□□□□□ -0.22
CDCA3-208ENST00000540683 A0A0G2JLW4 131 aa13.66□□□□□ -0.22
CDCA3-208ENST00000540683 ATXN8OSP0DMR3 200 aa13.66□□□□□ -0.22
CDCA3-208ENST00000540683 DPEP1P16444 411 aa13.66□□□□□ -0.22
CDCA3-208ENST00000540683 PDE6BP35913 854 aa13.66□□□□□ -0.22
CDCA3-208ENST00000540683 GPBP1L1Q9HC44 474 aaPredicted RBP13.66□□□□□ -0.22
CDCA3-208ENST00000540683 H0YIN7 160 aa13.65□□□□□ -0.22
CDCA3-208ENST00000540683 SERPINB2P05120 415 aa13.65□□□□□ -0.22
CDCA3-208ENST00000540683 ST5P78524 1137 aa13.65□□□□□ -0.22
CDCA3-208ENST00000540683 NFIXQ14938 502 aa13.65□□□□□ -0.22
CDCA3-208ENST00000540683 DZIP3Q86Y13 1208 aaKnown RBP13.65□□□□□ -0.22
CDCA3-208ENST00000540683 PLEKHF1Q96S99 279 aa13.65□□□□□ -0.22
CDCA3-208ENST00000540683 N4BP2Q86UW6 1770 aaPredicted RBP13.64□□□□□ -0.23
CDCA3-208ENST00000540683 DDR1Q08345 913 aa13.64□□□□□ -0.23
CDCA3-208ENST00000540683 ARHGAP27Q6ZUM4 889 aa13.64□□□□□ -0.23
CDCA3-208ENST00000540683 ARFGEF1Q9Y6D6 1849 aa13.64□□□□□ -0.23
CDCA3-208ENST00000540683 SCN7AQ01118 1682 aa13.63□□□□□ -0.23
CDCA3-208ENST00000540683 BRIP1Q9BX63 1249 aa13.63□□□□□ -0.23
CDCA3-208ENST00000540683 ATP10DQ9P241 1426 aa13.63□□□□□ -0.23
CDCA3-208ENST00000540683 ERBB4Q15303 1308 aa13.63□□□□□ -0.23
CDCA3-208ENST00000540683 ZC3H4Q9UPT8 1303 aaKnown RBP13.63□□□□□ -0.23
CDCA3-208ENST00000540683 NRXN2Q9P2S2 1712 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 BRCA1P38398 1863 aaKnown RBP13.62□□□□□ -0.23
CDCA3-208ENST00000540683 A1BGP04217 495 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 RIPK4P57078 832 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 C1QTNF8P60827 252 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 SOGA3Q5TF21 947 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 TTLL6Q8N841 843 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 CNBD1Q8NA66 436 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 CHMP4AQ9BY43 222 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 TBC1D2BQ9UPU7 963 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 DLG5Q8TDM6 1919 aa13.62□□□□□ -0.23
CDCA3-208ENST00000540683 KIAA1551Q9HCM1 1747 aa13.61□□□□□ -0.23
CDCA3-208ENST00000540683 MYCNP04198 464 aaPredicted RBP13.61□□□□□ -0.23
CDCA3-208ENST00000540683 CALD1Q05682 793 aaKnown RBP13.61□□□□□ -0.23
CDCA3-208ENST00000540683 DCTN1Q14203 1278 aa13.61□□□□□ -0.23
CDCA3-208ENST00000540683 TPTE2Q6XPS3 522 aa13.61□□□□□ -0.23
CDCA3-208ENST00000540683 KIF6Q6ZMV9 814 aa13.61□□□□□ -0.23
CDCA3-208ENST00000540683 USP16Q9Y5T5 823 aa13.61□□□□□ -0.23
CDCA3-208ENST00000540683 LAMB4A4D0S4 1761 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 ADCY9O60503 1353 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 AFDNP55196 1824 aaKnown RBP13.6□□□□□ -0.23
CDCA3-208ENST00000540683 BICDL1Q6ZP65 573 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 NBPF5PQ86XG9 351 aaPredicted RBP13.6□□□□□ -0.23
CDCA3-208ENST00000540683 C2CD5Q86YS7 1000 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 RUNDC1Q96C34 613 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 NYXQ9GZU5 481 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 BCL2L12Q9HB09 334 aa13.6□□□□□ -0.23
CDCA3-208ENST00000540683 TSPYL4Q9UJ04 414 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms