RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 CCDC125Q86Z20 511 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 ADGRL1O94910 1474 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 IRF5Q13568 498 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 CUL4AQ13619 759 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 ZSCAN26Q16670 478 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 INTS3Q68E01 1043 aaKnown RBP12.71□□□□□ -0.37
RTN3-208ENST00000537981 NCAPGQ9BPX3 1015 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 EPC1Q9H2F5 836 aa12.71□□□□□ -0.37
RTN3-208ENST00000537981 H2AFXP16104 143 aaPredicted RBP12.7□□□□□ -0.38
RTN3-208ENST00000537981 FOXR1Q6PIV2 292 aa12.7□□□□□ -0.38
RTN3-208ENST00000537981 PROM2Q8N271 834 aa12.7□□□□□ -0.38
RTN3-208ENST00000537981 LMOD3Q0VAK6 560 aa12.7□□□□□ -0.38
RTN3-208ENST00000537981 MYCBPQ99417 103 aaPredicted RBP12.7□□□□□ -0.38
RTN3-208ENST00000537981 MED14O60244 1454 aa12.7□□□□□ -0.38
RTN3-208ENST00000537981 GOLGA6L6A8MZA4 724 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 ELL2O00472 640 aaPredicted RBP12.69□□□□□ -0.38
RTN3-208ENST00000537981 GUCY2CP25092 1073 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 CKAP2LQ8IYA6 745 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 BANK1Q8NDB2 785 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.69□□□□□ -0.38
RTN3-208ENST00000537981 KCNV2Q8TDN2 545 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 MADDQ8WXG6 1647 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 CDC42BPBQ9Y5S2 1711 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 MUM1L1Q5H9M0 696 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 SRLQ86TD4 932 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 WDR70Q9NW82 654 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.69□□□□□ -0.38
RTN3-208ENST00000537981 MRVI1Q9Y6F6 885 aa12.69□□□□□ -0.38
RTN3-208ENST00000537981 CLGNO14967 610 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 SASH3O75995 380 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 FAM212AQ96EL1 285 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 RRP15Q9Y3B9 282 aaKnown RBP12.68□□□□□ -0.38
RTN3-208ENST00000537981 ERVK-7P63135 1459 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 NEO1Q92859 1461 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 NSD3Q9BZ95 1437 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 NYAP1Q6ZVC0 841 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 REXO1L1PQ8IX06 675 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 ERO1AQ96HE7 468 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 JRKLQ9Y4A0 524 aa12.68□□□□□ -0.38
RTN3-208ENST00000537981 TRIM5Q9C035 493 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 ZNF518AQ6AHZ1 1483 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 TPM3P06753 285 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 ZNF75DP51815 510 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 UBE2HP62256 183 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 DNM1Q05193 864 aaKnown RBP12.67□□□□□ -0.38
RTN3-208ENST00000537981 TSPYL6Q8N831 410 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 RETREG2Q8NC44 543 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 CCDC34Q96HJ3 373 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 CBX8Q9HC52 389 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 TRAPPC8Q9Y2L5 1435 aa12.67□□□□□ -0.38
RTN3-208ENST00000537981 PLA2G4DQ86XP0 818 aa12.66□□□□□ -0.38
RTN3-208ENST00000537981 TMEM87AQ8NBN3 555 aa12.66□□□□□ -0.38
RTN3-208ENST00000537981 ADGRB2O60241 1585 aa12.66□□□□□ -0.38
RTN3-208ENST00000537981 SLU7O95391 586 aaKnown RBP12.66□□□□□ -0.38
RTN3-208ENST00000537981 TMPOP42166 694 aaKnown RBP12.66□□□□□ -0.38
RTN3-208ENST00000537981 PTPN14Q15678 1187 aa12.66□□□□□ -0.38
RTN3-208ENST00000537981 ANO6Q4KMQ2 910 aa12.66□□□□□ -0.38
RTN3-208ENST00000537981 SLC12A5Q9H2X9 1139 aa12.66□□□□□ -0.38
RTN3-208ENST00000537981 SCAF11Q99590 1463 aaKnown RBP12.66□□□□□ -0.38
RTN3-208ENST00000537981 PREX2Q70Z35 1606 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 ZRANB2O95218 330 aaKnown RBP eCLIP12.65□□□□□ -0.38
RTN3-208ENST00000537981 TSPY4P0CV99 314 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 TSPY10P0CW01 314 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 OAS2P29728 719 aaKnown RBP12.65□□□□□ -0.38
RTN3-208ENST00000537981 SLFNL1Q499Z3 407 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 ARHGAP29Q52LW3 1261 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 GORABQ5T7V8 394 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 FAM200AQ8TCP9 573 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 FBXW7Q969H0 707 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 IL25Q9H293 177 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 CLIP2Q9UDT6 1046 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 A0A087WWV3 80 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 PATL2C9JE40 543 aaKnown RBP12.65□□□□□ -0.38
RTN3-208ENST00000537981 LIG1P18858 919 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 KRT24Q2M2I5 525 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 THUMPD2Q9BTF0 503 aaKnown RBP12.65□□□□□ -0.38
RTN3-208ENST00000537981 ARAP3Q8WWN8 1544 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 RAD50Q92878 1312 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 ABCC11Q96J66 1382 aa12.65□□□□□ -0.38
RTN3-208ENST00000537981 ERC2O15083 957 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 TYRO3Q06418 890 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 FAM173BQ6P4H8 233 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 TXLNBQ8N3L3 684 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 SPOCK2Q92563 424 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 SLC26A8Q96RN1 970 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 PLCD4Q9BRC7 762 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 WDR33Q9C0J8 1336 aaKnown RBP12.64□□□□□ -0.39
RTN3-208ENST00000537981 SYCP2Q9BX26 1530 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 IPO8O15397 1037 aaKnown RBP12.64□□□□□ -0.39
RTN3-208ENST00000537981 FAM193AP78312 1265 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 LRRC8AQ8IWT6 810 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 CARD10Q9BWT7 1032 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 YEATS2Q9ULM3 1422 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 SAMD9LQ8IVG5 1584 aa12.64□□□□□ -0.39
RTN3-208ENST00000537981 GRIPAP1Q4V328 841 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 PLEKHF1Q96S99 279 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 USP16Q9Y5T5 823 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 CT47B1P0C2W7 299 aaPredicted RBP12.63□□□□□ -0.39
RTN3-208ENST00000537981 CCDC192P0DO97 292 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 SYT1P21579 422 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms