RNA–Protein interactions for RNA: ENST00000537634.1

CHD4-207, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 691 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-207ENST00000537634 SIPA1L3O60292 1781 aaPredicted RBP13.01□□□□□ -0.33
CHD4-207ENST00000537634 ARHGAP27Q6ZUM4 889 aa13□□□□□ -0.33
CHD4-207ENST00000537634 ZBTB1Q9Y2K1 713 aa13□□□□□ -0.33
CHD4-207ENST00000537634 POLRMTO00411 1230 aaKnown RBP12.99□□□□□ -0.33
CHD4-207ENST00000537634 PIM2Q9P1W9 311 aa12.99□□□□□ -0.33
CHD4-207ENST00000537634 NARFQ9UHQ1 456 aa12.99□□□□□ -0.33
CHD4-207ENST00000537634 AFDNP55196 1824 aaKnown RBP12.98□□□□□ -0.33
CHD4-207ENST00000537634 STARD3NLO95772 234 aa12.98□□□□□ -0.33
CHD4-207ENST00000537634 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
CHD4-207ENST00000537634 TM4SF1P30408 202 aa12.98□□□□□ -0.33
CHD4-207ENST00000537634 PRKAR2BP31323 418 aa12.98□□□□□ -0.33
CHD4-207ENST00000537634 NUDCQ9Y266 331 aa12.98□□□□□ -0.33
CHD4-207ENST00000537634 HEG1Q9ULI3 1381 aa12.97□□□□□ -0.33
CHD4-207ENST00000537634 NRXN2Q9P2S2 1712 aa12.97□□□□□ -0.33
CHD4-207ENST00000537634 KCNA3P22001 575 aa12.97□□□□□ -0.33
CHD4-207ENST00000537634 DALRD3Q5D0E6 543 aaKnown RBP12.97□□□□□ -0.33
CHD4-207ENST00000537634 ZNF790Q6PG37 636 aa12.97□□□□□ -0.33
CHD4-207ENST00000537634 IL17REQ8NFR9 667 aa12.97□□□□□ -0.33
CHD4-207ENST00000537634 ZNF496Q96IT1 587 aaPredicted RBP12.97□□□□□ -0.33
CHD4-207ENST00000537634 CEMIPQ8WUJ3 1361 aa12.96□□□□□ -0.33
CHD4-207ENST00000537634 SCN7AQ01118 1682 aa12.96□□□□□ -0.33
CHD4-207ENST00000537634 A0A087WZG4 1122 aa12.96□□□□□ -0.33
CHD4-207ENST00000537634 CHRNA5P30532 468 aa12.96□□□□□ -0.33
CHD4-207ENST00000537634 NFIXQ14938 502 aa12.96□□□□□ -0.33
CHD4-207ENST00000537634 PIAS4Q8N2W9 510 aaPredicted RBP12.96□□□□□ -0.33
CHD4-207ENST00000537634 TEX13AQ9BXU3 409 aaPredicted RBP12.96□□□□□ -0.33
CHD4-207ENST00000537634 RSPH6AQ9H0K4 717 aa12.96□□□□□ -0.33
CHD4-207ENST00000537634 DLEC1Q9Y238 1755 aa12.95□□□□□ -0.34
CHD4-207ENST00000537634 U2AF1L5P0DN76 240 aaPredicted RBP12.95□□□□□ -0.34
CHD4-207ENST00000537634 PPP2R1AP30153 589 aa12.95□□□□□ -0.34
CHD4-207ENST00000537634 U2AF1Q01081 240 aaKnown RBP eCLIP12.95□□□□□ -0.34
CHD4-207ENST00000537634 PHACTR3Q96KR7 559 aa12.95□□□□□ -0.34
CHD4-207ENST00000537634 FMNL2Q96PY5 1086 aa12.95□□□□□ -0.34
CHD4-207ENST00000537634 ZNF330Q9Y3S2 320 aaPredicted RBP12.95□□□□□ -0.34
CHD4-207ENST00000537634 KIF3CO14782 793 aa12.94□□□□□ -0.34
CHD4-207ENST00000537634 SERPINB2P05120 415 aa12.94□□□□□ -0.34
CHD4-207ENST00000537634 EIF5P55010 431 aaKnown RBP12.94□□□□□ -0.34
CHD4-207ENST00000537634 NPM2Q86SE8 214 aaKnown RBP12.94□□□□□ -0.34
CHD4-207ENST00000537634 BCL2L12Q9HB09 334 aa12.94□□□□□ -0.34
CHD4-207ENST00000537634 BTBD11A6QL63 1104 aa12.93□□□□□ -0.34
CHD4-207ENST00000537634 C9orf131Q5VYM1 1079 aa12.93□□□□□ -0.34
CHD4-207ENST00000537634 RTF1Q92541 710 aaKnown RBP12.93□□□□□ -0.34
CHD4-207ENST00000537634 HSPA6P17066 643 aa12.92□□□□□ -0.34
CHD4-207ENST00000537634 BICDL1Q6ZP65 573 aa12.92□□□□□ -0.34
CHD4-207ENST00000537634 RNF181Q9P0P0 153 aa12.92□□□□□ -0.34
CHD4-207ENST00000537634 IL6STP40189 918 aaPredicted RBP12.91□□□□□ -0.34
CHD4-207ENST00000537634 TBC1D2BQ9UPU7 963 aa12.91□□□□□ -0.34
CHD4-207ENST00000537634 BCORQ6W2J9 1755 aa12.91□□□□□ -0.34
CHD4-207ENST00000537634 CARMIL3Q8ND23 1372 aa12.91□□□□□ -0.34
CHD4-207ENST00000537634 SBF1O95248 1867 aa12.91□□□□□ -0.34
CHD4-207ENST00000537634 KCNQ3O43525 872 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 A1BGP04217 495 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 TBC1D9BQ66K14 1250 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 MCM10Q7L590 875 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 C2CD5Q86YS7 1000 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 NMRK2Q9NPI5 230 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 ANKRD31Q8N7Z5 1873 aa12.9□□□□□ -0.34
CHD4-207ENST00000537634 H0YIN7 160 aa12.89□□□□□ -0.35
CHD4-207ENST00000537634 TOMM70O94826 608 aa12.89□□□□□ -0.35
CHD4-207ENST00000537634 NEFMP07197 916 aa12.89□□□□□ -0.35
CHD4-207ENST00000537634 TTLL6Q8N841 843 aa12.89□□□□□ -0.35
CHD4-207ENST00000537634 TNRC6CQ9HCJ0 1690 aaKnown RBP12.89□□□□□ -0.35
CHD4-207ENST00000537634 KDM2BQ8NHM5 1336 aa12.88□□□□□ -0.35
CHD4-207ENST00000537634 NPHP1O15259 732 aa12.88□□□□□ -0.35
CHD4-207ENST00000537634 HTATSF1O43719 755 aaKnown RBP12.88□□□□□ -0.35
CHD4-207ENST00000537634 SNRPA1P09661 255 aaKnown RBP12.88□□□□□ -0.35
CHD4-207ENST00000537634 RASSF7Q02833 373 aa12.88□□□□□ -0.35
CHD4-207ENST00000537634 C16orf71Q8IYS4 520 aaPredicted RBP12.88□□□□□ -0.35
CHD4-207ENST00000537634 COL11A2P13942 1736 aaPredicted RBP12.88□□□□□ -0.35
CHD4-207ENST00000537634 CAMTA2O94983 1202 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 PDE6BP35913 854 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 DCTN1Q14203 1278 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 PRR5LQ6MZQ0 368 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 DZIP3Q86Y13 1208 aaKnown RBP12.87□□□□□ -0.35
CHD4-207ENST00000537634 SETDB2Q96T68 719 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 PDZRN3Q9UPQ7 1066 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 USP16Q9Y5T5 823 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 DLG5Q8TDM6 1919 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 TIAM2Q8IVF5 1701 aa12.87□□□□□ -0.35
CHD4-207ENST00000537634 LAMB4A4D0S4 1761 aa12.86□□□□□ -0.35
CHD4-207ENST00000537634 LMNB1P20700 586 aa12.86□□□□□ -0.35
CHD4-207ENST00000537634 PIP4K2AP48426 406 aaPredicted RBP12.86□□□□□ -0.35
CHD4-207ENST00000537634 CNBD1Q8NA66 436 aa12.86□□□□□ -0.35
CHD4-207ENST00000537634 ZNF622Q969S3 477 aaKnown RBP eCLIP12.86□□□□□ -0.351e-14■□□□□ 8.4
CHD4-207ENST00000537634 BRIP1Q9BX63 1249 aa12.86□□□□□ -0.35
CHD4-207ENST00000537634 ZC3H4Q9UPT8 1303 aaKnown RBP12.86□□□□□ -0.35
CHD4-207ENST00000537634 CCDC88AQ3V6T2 1871 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 PRAMEF22A3QJZ6 481 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 APLP1P51693 650 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 ST5P78524 1137 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 TAF7Q15545 349 aaPredicted RBP12.85□□□□□ -0.35
CHD4-207ENST00000537634 CCDC24Q8N4L8 307 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 ZNF652Q9Y2D9 606 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 CACNA1SQ13698 1873 aa12.85□□□□□ -0.35
CHD4-207ENST00000537634 RBM46Q8TBY0 533 aaKnown RBP12.84□□□□□ -0.35
CHD4-207ENST00000537634 KDM3BQ7LBC6 1761 aa12.84□□□□□ -0.35
CHD4-207ENST00000537634 CLEC4GQ6UXB4 293 aa12.83□□□□□ -0.36
CHD4-207ENST00000537634 NBPF5PQ86XG9 351 aaPredicted RBP12.83□□□□□ -0.36
CHD4-207ENST00000537634 ARFGEF2Q9Y6D5 1785 aa12.83□□□□□ -0.36
CHD4-207ENST00000537634 MAPK8IP3Q9UPT6 1336 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms