RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 STARD3NLO95772 234 aa18.65■□□□□ 0.58
SYNE1-235ENST00000537033 DDR1Q08345 913 aa18.65■□□□□ 0.58
SYNE1-235ENST00000537033 USPL1Q5W0Q7 1092 aa18.65■□□□□ 0.58
SYNE1-235ENST00000537033 ZBTB1Q9Y2K1 713 aa18.65■□□□□ 0.58
SYNE1-235ENST00000537033 PRKAR2BP31323 418 aa18.64■□□□□ 0.57
SYNE1-235ENST00000537033 NARFQ9UHQ1 456 aa18.64■□□□□ 0.57
SYNE1-235ENST00000537033 ZNF790Q6PG37 636 aa18.63■□□□□ 0.57
SYNE1-235ENST00000537033 ARHGAP27Q6ZUM4 889 aa18.63■□□□□ 0.57
SYNE1-235ENST00000537033 PIM2Q9P1W9 311 aa18.63■□□□□ 0.57
SYNE1-235ENST00000537033 AFDNP55196 1824 aaKnown RBP18.63■□□□□ 0.57
SYNE1-235ENST00000537033 POLRMTO00411 1230 aaKnown RBP18.62■□□□□ 0.57
SYNE1-235ENST00000537033 CANXP27824 592 aaKnown RBP18.62■□□□□ 0.57
SYNE1-235ENST00000537033 IL17REQ8NFR9 667 aa18.62■□□□□ 0.57
SYNE1-235ENST00000537033 TEX13AQ9BXU3 409 aaPredicted RBP18.62■□□□□ 0.57
SYNE1-235ENST00000537033 RSPH6AQ9H0K4 717 aa18.62■□□□□ 0.57
SYNE1-235ENST00000537033 HEG1Q9ULI3 1381 aa18.62■□□□□ 0.57
SYNE1-235ENST00000537033 A0A087WZG4 1122 aa18.61■□□□□ 0.57
SYNE1-235ENST00000537033 U2AF1L5P0DN76 240 aaPredicted RBP18.61■□□□□ 0.57
SYNE1-235ENST00000537033 PPP2R1AP30153 589 aa18.61■□□□□ 0.57
SYNE1-235ENST00000537033 TM4SF1P30408 202 aa18.61■□□□□ 0.57
SYNE1-235ENST00000537033 U2AF1Q01081 240 aaKnown RBP eCLIP18.61■□□□□ 0.57
SYNE1-235ENST00000537033 DALRD3Q5D0E6 543 aaKnown RBP18.61■□□□□ 0.57
SYNE1-235ENST00000537033 ZNF496Q96IT1 587 aaPredicted RBP18.61■□□□□ 0.57
SYNE1-235ENST00000537033 NRXN2Q9P2S2 1712 aa18.6■□□□□ 0.57
SYNE1-235ENST00000537033 SCN7AQ01118 1682 aa18.6■□□□□ 0.57
SYNE1-235ENST00000537033 CEMIPQ8WUJ3 1361 aa18.6■□□□□ 0.57
SYNE1-235ENST00000537033 FMNL2Q96PY5 1086 aa18.6■□□□□ 0.57
SYNE1-235ENST00000537033 KCNA3P22001 575 aa18.59■□□□□ 0.57
SYNE1-235ENST00000537033 NFIXQ14938 502 aa18.59■□□□□ 0.57
SYNE1-235ENST00000537033 NPM2Q86SE8 214 aaKnown RBP18.59■□□□□ 0.57
SYNE1-235ENST00000537033 RTF1Q92541 710 aaKnown RBP18.59■□□□□ 0.57
SYNE1-235ENST00000537033 PHACTR3Q96KR7 559 aa18.59■□□□□ 0.57
SYNE1-235ENST00000537033 DLEC1Q9Y238 1755 aa18.58■□□□□ 0.57
SYNE1-235ENST00000537033 BTBD11A6QL63 1104 aa18.58■□□□□ 0.56
SYNE1-235ENST00000537033 CHRNA5P30532 468 aa18.58■□□□□ 0.56
SYNE1-235ENST00000537033 ZNF330Q9Y3S2 320 aaPredicted RBP18.58■□□□□ 0.56
SYNE1-235ENST00000537033 SERPINB2P05120 415 aa18.56■□□□□ 0.56
SYNE1-235ENST00000537033 EIF5P55010 431 aaKnown RBP18.56■□□□□ 0.56
SYNE1-235ENST00000537033 NEFMP07197 916 aa18.55■□□□□ 0.56
SYNE1-235ENST00000537033 BCL2L12Q9HB09 334 aa18.55■□□□□ 0.56
SYNE1-235ENST00000537033 IL6STP40189 918 aaPredicted RBP18.54■□□□□ 0.56
SYNE1-235ENST00000537033 BICDL1Q6ZP65 573 aa18.54■□□□□ 0.56
SYNE1-235ENST00000537033 BCORQ6W2J9 1755 aa18.53■□□□□ 0.56
SYNE1-235ENST00000537033 C9orf131Q5VYM1 1079 aa18.53■□□□□ 0.56
SYNE1-235ENST00000537033 HTATSF1O43719 755 aaKnown RBP18.52■□□□□ 0.56
SYNE1-235ENST00000537033 MCM10Q7L590 875 aa18.52■□□□□ 0.56
SYNE1-235ENST00000537033 CARMIL3Q8ND23 1372 aa18.52■□□□□ 0.55
SYNE1-235ENST00000537033 H0YIN7 160 aa18.51■□□□□ 0.55
SYNE1-235ENST00000537033 KIF3CO14782 793 aa18.51■□□□□ 0.55
SYNE1-235ENST00000537033 RNF181Q9P0P0 153 aa18.51■□□□□ 0.55
SYNE1-235ENST00000537033 TBC1D2BQ9UPU7 963 aa18.51■□□□□ 0.55
SYNE1-235ENST00000537033 SBF1O95248 1867 aa18.51■□□□□ 0.55
SYNE1-235ENST00000537033 NPHP1O15259 732 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 KCNQ3O43525 872 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 A1BGP04217 495 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 HSPA6P17066 643 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 TBC1D9BQ66K14 1250 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 C2CD5Q86YS7 1000 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 TTLL6Q8N841 843 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 DLG5Q8TDM6 1919 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 ANKRD31Q8N7Z5 1873 aa18.5■□□□□ 0.55
SYNE1-235ENST00000537033 SNRPA1P09661 255 aaKnown RBP18.49■□□□□ 0.55
SYNE1-235ENST00000537033 PDZRN3Q9UPQ7 1066 aa18.49■□□□□ 0.55
SYNE1-235ENST00000537033 LAMB4A4D0S4 1761 aa18.49■□□□□ 0.55
SYNE1-235ENST00000537033 KDM2BQ8NHM5 1336 aa18.49■□□□□ 0.55
SYNE1-235ENST00000537033 TNRC6CQ9HCJ0 1690 aaKnown RBP18.48■□□□□ 0.55
SYNE1-235ENST00000537033 PDE6BP35913 854 aa18.48■□□□□ 0.55
SYNE1-235ENST00000537033 DZIP3Q86Y13 1208 aaKnown RBP18.48■□□□□ 0.55
SYNE1-235ENST00000537033 SETDB2Q96T68 719 aa18.48■□□□□ 0.55
SYNE1-235ENST00000537033 TOMM70O94826 608 aa18.47■□□□□ 0.55
SYNE1-235ENST00000537033 DCTN1Q14203 1278 aa18.47■□□□□ 0.55
SYNE1-235ENST00000537033 ZNF652Q9Y2D9 606 aa18.47■□□□□ 0.55
SYNE1-235ENST00000537033 COL11A2P13942 1736 aaPredicted RBP18.46■□□□□ 0.55
SYNE1-235ENST00000537033 CAMTA2O94983 1202 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 ST5P78524 1137 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 TAF7Q15545 349 aaPredicted RBP18.46■□□□□ 0.55
SYNE1-235ENST00000537033 C16orf71Q8IYS4 520 aaPredicted RBP18.46■□□□□ 0.55
SYNE1-235ENST00000537033 CNBD1Q8NA66 436 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 BRIP1Q9BX63 1249 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 PNNQ9H307 717 aaKnown RBP18.46■□□□□ 0.55
SYNE1-235ENST00000537033 NMRK2Q9NPI5 230 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 USP16Q9Y5T5 823 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 TIAM2Q8IVF5 1701 aa18.46■□□□□ 0.55
SYNE1-235ENST00000537033 PRR5LQ6MZQ0 368 aa18.45■□□□□ 0.54
SYNE1-235ENST00000537033 MAPK8IP3Q9UPT6 1336 aa18.45■□□□□ 0.54
SYNE1-235ENST00000537033 ZC3H4Q9UPT8 1303 aaKnown RBP18.45■□□□□ 0.54
SYNE1-235ENST00000537033 KDM3BQ7LBC6 1761 aa18.45■□□□□ 0.54
SYNE1-235ENST00000537033 CCDC88AQ3V6T2 1871 aa18.44■□□□□ 0.54
SYNE1-235ENST00000537033 LMNB1P20700 586 aa18.44■□□□□ 0.54
SYNE1-235ENST00000537033 PIP4K2AP48426 406 aaPredicted RBP18.44■□□□□ 0.54
SYNE1-235ENST00000537033 RASSF7Q02833 373 aa18.44■□□□□ 0.54
SYNE1-235ENST00000537033 PNISRQ8TF01 805 aaKnown RBP18.44■□□□□ 0.54
SYNE1-235ENST00000537033 ZNF622Q969S3 477 aaKnown RBP eCLIP18.44■□□□□ 0.54
SYNE1-235ENST00000537033 CACNA1SQ13698 1873 aa18.43■□□□□ 0.54
SYNE1-235ENST00000537033 PRAMEF22A3QJZ6 481 aa18.43■□□□□ 0.54
SYNE1-235ENST00000537033 CLEC4GQ6UXB4 293 aa18.42■□□□□ 0.54
SYNE1-235ENST00000537033 CCDC24Q8N4L8 307 aa18.42■□□□□ 0.54
SYNE1-235ENST00000537033 ARFGEF2Q9Y6D5 1785 aa18.42■□□□□ 0.54
SYNE1-235ENST00000537033 NFE2L2Q16236 605 aa18.41■□□□□ 0.54
SYNE1-235ENST00000537033 NBPF5PQ86XG9 351 aaPredicted RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms