RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 UBR3Q6ZT12 1888 aa15.47■□□□□ 0.07
CLIP1-208ENST00000537004 KCPQ6ZWJ8 1503 aa15.47■□□□□ 0.07
CLIP1-208ENST00000537004 THUMPD2Q9BTF0 503 aaKnown RBP15.47■□□□□ 0.07
CLIP1-208ENST00000537004 BTBD11A6QL63 1104 aa15.46■□□□□ 0.07
CLIP1-208ENST00000537004 RPS6KA4O75676 772 aa15.46■□□□□ 0.07
CLIP1-208ENST00000537004 CYP19A1P11511 503 aaPredicted RBP15.46■□□□□ 0.07
CLIP1-208ENST00000537004 B4GALNT3Q6L9W6 998 aa15.46■□□□□ 0.07
CLIP1-208ENST00000537004 TRMT2AQ8IZ69 625 aaKnown RBP15.46■□□□□ 0.07
CLIP1-208ENST00000537004 MIS18AQ9NYP9 233 aa15.46■□□□□ 0.07
CLIP1-208ENST00000537004 MYH14Q7Z406 1995 aaKnown RBP15.45■□□□□ 0.06
CLIP1-208ENST00000537004 NEFMP07197 916 aa15.45■□□□□ 0.06
CLIP1-208ENST00000537004 NLGN2Q8NFZ4 835 aa15.45■□□□□ 0.06
CLIP1-208ENST00000537004 NFE2L2Q16236 605 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 SRP68Q9UHB9 627 aaKnown RBP15.44■□□□□ 0.06
CLIP1-208ENST00000537004 ZBTB1Q9Y2K1 713 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 VIRMAQ69YN4 1812 aaKnown RBP15.44■□□□□ 0.06
CLIP1-208ENST00000537004 E9PSI1 815 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 RFC4P35249 363 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 WWC1Q8IX03 1113 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 SPINK5Q9NQ38 1064 aaPredicted RBP15.44■□□□□ 0.06
CLIP1-208ENST00000537004 CCDC87Q9NVE4 849 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 MAPK8IP3Q9UPT6 1336 aa15.44■□□□□ 0.06
CLIP1-208ENST00000537004 PRAMEF22A3QJZ6 481 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 COL5A3P25940 1745 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-208ENST00000537004 TJP1Q07157 1748 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 ZNF831Q5JPB2 1677 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 GYS1P13807 737 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 NEUROD2Q15784 382 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 VSIG10Q8N0Z9 540 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 TSHZ2Q9NRE2 1034 aa15.43■□□□□ 0.06
CLIP1-208ENST00000537004 RRP7AQ9Y3A4 280 aaKnown RBP15.43■□□□□ 0.06
CLIP1-208ENST00000537004 HTATSF1O43719 755 aaKnown RBP15.42■□□□□ 0.06
CLIP1-208ENST00000537004 MMP10P09238 476 aa15.42■□□□□ 0.06
CLIP1-208ENST00000537004 ADRA2BP18089 450 aa15.42■□□□□ 0.06
CLIP1-208ENST00000537004 CANXP27824 592 aaKnown RBP15.42■□□□□ 0.06
CLIP1-208ENST00000537004 HEG1Q9ULI3 1381 aa15.42■□□□□ 0.06
CLIP1-208ENST00000537004 FMNL2Q96PY5 1086 aa15.41■□□□□ 0.06
CLIP1-208ENST00000537004 RIPK4P57078 832 aa15.41■□□□□ 0.06
CLIP1-208ENST00000537004 PNNQ9H307 717 aaKnown RBP15.41■□□□□ 0.06
CLIP1-208ENST00000537004 SOS1Q07889 1333 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-208ENST00000537004 PIP4K2AP48426 406 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-208ENST00000537004 TAF7Q15545 349 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-208ENST00000537004 USP16Q9Y5T5 823 aa15.4■□□□□ 0.06
CLIP1-208ENST00000537004 COL24A1Q17RW2 1714 aa15.4■□□□□ 0.06
CLIP1-208ENST00000537004 PLIN1O60240 522 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 STARD3NLO95772 234 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 A1BGP04217 495 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 TMPOP42166 694 aaKnown RBP15.39■□□□□ 0.05
CLIP1-208ENST00000537004 CCDC27Q2M243 656 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 NCBP3Q53F19 620 aaKnown RBP15.39■□□□□ 0.05
CLIP1-208ENST00000537004 CCDC136Q96JN2 1154 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 WWC3Q9ULE0 1092 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 SIPA1L3O60292 1781 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-208ENST00000537004 USP42Q9H9J4 1324 aaKnown RBP15.39■□□□□ 0.05
CLIP1-208ENST00000537004 USPL1Q5W0Q7 1092 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 EXOC6Q8TAG9 804 aa15.39■□□□□ 0.05
CLIP1-208ENST00000537004 ZNF330Q9Y3S2 320 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-208ENST00000537004 NLGN1Q8N2Q7 840 aa15.38■□□□□ 0.05
CLIP1-208ENST00000537004 UBR2Q8IWV8 1755 aa15.38■□□□□ 0.05
CLIP1-208ENST00000537004 WDR63Q8IWG1 891 aa15.38■□□□□ 0.05
CLIP1-208ENST00000537004 COL15A1P39059 1388 aa15.37■□□□□ 0.05
CLIP1-208ENST00000537004 DLG5Q8TDM6 1919 aa15.37■□□□□ 0.05
CLIP1-208ENST00000537004 CICQ96RK0 1608 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-208ENST00000537004 ZPR1O75312 459 aa15.36■□□□□ 0.05
CLIP1-208ENST00000537004 EIF5P55010 431 aaKnown RBP15.36■□□□□ 0.05
CLIP1-208ENST00000537004 DCAF8L1A6NGE4 600 aa15.36■□□□□ 0.05
CLIP1-208ENST00000537004 GPR162Q16538 588 aa15.36■□□□□ 0.05
CLIP1-208ENST00000537004 TEX13AQ9BXU3 409 aaPredicted RBP15.36■□□□□ 0.05
CLIP1-208ENST00000537004 SNRPA1P09661 255 aaKnown RBP15.35■□□□□ 0.05
CLIP1-208ENST00000537004 DDR1Q08345 913 aa15.35■□□□□ 0.05
CLIP1-208ENST00000537004 BCL2L12Q9HB09 334 aa15.35■□□□□ 0.05
CLIP1-208ENST00000537004 TBC1D2BQ9UPU7 963 aa15.35■□□□□ 0.05
CLIP1-208ENST00000537004 CD2APQ9Y5K6 639 aa15.35■□□□□ 0.05
CLIP1-208ENST00000537004 NARFQ9UHQ1 456 aa15.34■□□□□ 0.05
CLIP1-208ENST00000537004 C4AP0C0L4 1744 aa15.34■□□□□ 0.05
CLIP1-208ENST00000537004 YBX3P16989 372 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLIP1-208ENST00000537004 TRIM35Q9UPQ4 493 aa15.34■□□□□ 0.05
CLIP1-208ENST00000537004 EIF4A1P60842 406 aaKnown RBP15.33■□□□□ 0.04
CLIP1-208ENST00000537004 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.33■□□□□ 0.04
CLIP1-208ENST00000537004 C20orf194Q5TEA3 1177 aa15.33■□□□□ 0.04
CLIP1-208ENST00000537004 PARP3Q9Y6F1 533 aa15.33■□□□□ 0.04
CLIP1-208ENST00000537004 NBPF26B4DH59 902 aa15.32■□□□□ 0.04
CLIP1-208ENST00000537004 TM4SF1P30408 202 aa15.32■□□□□ 0.04
CLIP1-208ENST00000537004 IL6STP40189 918 aaPredicted RBP15.32■□□□□ 0.04
CLIP1-208ENST00000537004 NFIXQ14938 502 aa15.32■□□□□ 0.04
CLIP1-208ENST00000537004 NBPF10Q6P3W6 841 aaKnown RBP15.32■□□□□ 0.04
CLIP1-208ENST00000537004 NBPF15Q8N660 670 aa15.32■□□□□ 0.04
CLIP1-208ENST00000537004 CRBNQ96SW2 442 aa15.32■□□□□ 0.04
CLIP1-208ENST00000537004 TSPYL4Q9UJ04 414 aa15.32■□□□□ 0.04
CLIP1-208ENST00000537004 POLRMTO00411 1230 aaKnown RBP15.31■□□□□ 0.04
CLIP1-208ENST00000537004 GIGYF1O75420 1035 aaPredicted RBP15.31■□□□□ 0.04
CLIP1-208ENST00000537004 BICDL1Q6ZP65 573 aa15.31■□□□□ 0.04
CLIP1-208ENST00000537004 MYH16Q9H6N6 1097 aa15.31■□□□□ 0.04
CLIP1-208ENST00000537004 LAS1LQ9Y4W2 734 aaKnown RBP15.31■□□□□ 0.04
CLIP1-208ENST00000537004 A0A0G2JLW4 131 aa15.3■□□□□ 0.04
CLIP1-208ENST00000537004 YY1P25490 414 aa15.3■□□□□ 0.04
CLIP1-208ENST00000537004 LMOD3Q0VAK6 560 aa15.3■□□□□ 0.04
CLIP1-208ENST00000537004 BCAR3O75815 825 aa15.29■□□□□ 0.04
CLIP1-208ENST00000537004 KRT24Q2M2I5 525 aa15.29■□□□□ 0.04
CLIP1-208ENST00000537004 TBC1D9BQ66K14 1250 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms