RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 COL15A1P39059 1388 aa17.55■□□□□ 0.4
RTN3-207ENST00000536011 TEX13AQ9BXU3 409 aaPredicted RBP17.55■□□□□ 0.4
RTN3-207ENST00000536011 GPBP1L1Q9HC44 474 aaPredicted RBP17.55■□□□□ 0.4
RTN3-207ENST00000536011 N4BP2Q86UW6 1770 aaPredicted RBP17.55■□□□□ 0.4
RTN3-207ENST00000536011 A0A0G2JLW4 131 aa17.54■□□□□ 0.4
RTN3-207ENST00000536011 NPM3O75607 178 aaKnown RBP17.54■□□□□ 0.4
RTN3-207ENST00000536011 PPP2R1AP30153 589 aa17.54■□□□□ 0.4
RTN3-207ENST00000536011 PRKAR2BP31323 418 aa17.54■□□□□ 0.4
RTN3-207ENST00000536011 NARFQ9UHQ1 456 aa17.54■□□□□ 0.4
RTN3-207ENST00000536011 BCS1LQ9Y276 419 aa17.54■□□□□ 0.4
RTN3-207ENST00000536011 U2AF1L5P0DN76 240 aaPredicted RBP17.53■□□□□ 0.4
RTN3-207ENST00000536011 DPEP1P16444 411 aa17.53■□□□□ 0.4
RTN3-207ENST00000536011 U2AF1Q01081 240 aaKnown RBP eCLIP17.53■□□□□ 0.41e-7■■■□□ 14.6
RTN3-207ENST00000536011 USPL1Q5W0Q7 1092 aa17.53■□□□□ 0.4
RTN3-207ENST00000536011 ZNF790Q6PG37 636 aa17.53■□□□□ 0.4
RTN3-207ENST00000536011 RSPH6AQ9H0K4 717 aa17.53■□□□□ 0.4
RTN3-207ENST00000536011 ZBTB1Q9Y2K1 713 aa17.53■□□□□ 0.4
RTN3-207ENST00000536011 CEMIPQ8WUJ3 1361 aa17.53■□□□□ 0.4
RTN3-207ENST00000536011 A0A087WZG4 1122 aa17.52■□□□□ 0.4
RTN3-207ENST00000536011 SENP3-EIF4A1A0A087X0R7 540 aa17.52■□□□□ 0.4
RTN3-207ENST00000536011 FCHSD2O94868 740 aa17.52■□□□□ 0.4
RTN3-207ENST00000536011 DDR1Q08345 913 aa17.52■□□□□ 0.4
RTN3-207ENST00000536011 IL17REQ8NFR9 667 aa17.52■□□□□ 0.4
RTN3-207ENST00000536011 FMNL2Q96PY5 1086 aa17.52■□□□□ 0.4
RTN3-207ENST00000536011 SIPA1L3O60292 1781 aaPredicted RBP17.52■□□□□ 0.4
RTN3-207ENST00000536011 HEG1Q9ULI3 1381 aa17.52■□□□□ 0.39
RTN3-207ENST00000536011 POLRMTO00411 1230 aaKnown RBP17.51■□□□□ 0.39
RTN3-207ENST00000536011 NPM2Q86SE8 214 aaKnown RBP17.51■□□□□ 0.39
RTN3-207ENST00000536011 RTF1Q92541 710 aaKnown RBP17.51■□□□□ 0.39
RTN3-207ENST00000536011 PIM2Q9P1W9 311 aa17.51■□□□□ 0.39
RTN3-207ENST00000536011 BRCA1P38398 1863 aaKnown RBP17.5■□□□□ 0.39
RTN3-207ENST00000536011 NEFMP07197 916 aa17.5■□□□□ 0.39
RTN3-207ENST00000536011 CANXP27824 592 aaKnown RBP17.5■□□□□ 0.39
RTN3-207ENST00000536011 TM4SF1P30408 202 aa17.5■□□□□ 0.39
RTN3-207ENST00000536011 ZNF496Q96IT1 587 aaPredicted RBP17.5■□□□□ 0.39
RTN3-207ENST00000536011 BTBD11A6QL63 1104 aa17.49■□□□□ 0.39
RTN3-207ENST00000536011 DALRD3Q5D0E6 543 aaKnown RBP17.49■□□□□ 0.39
RTN3-207ENST00000536011 ARHGAP27Q6ZUM4 889 aa17.49■□□□□ 0.39
RTN3-207ENST00000536011 PHACTR3Q96KR7 559 aa17.49■□□□□ 0.39
RTN3-207ENST00000536011 ZNF526Q8TF50 670 aaPredicted RBP17.48■□□□□ 0.39
RTN3-207ENST00000536011 ARFGEF1Q9Y6D6 1849 aa17.48■□□□□ 0.39
RTN3-207ENST00000536011 EIF5P55010 431 aaKnown RBP17.47■□□□□ 0.39
RTN3-207ENST00000536011 NFIXQ14938 502 aa17.47■□□□□ 0.39
RTN3-207ENST00000536011 HTATSF1O43719 755 aaKnown RBP17.46■□□□□ 0.39
RTN3-207ENST00000536011 KCNA3P22001 575 aa17.46■□□□□ 0.39
RTN3-207ENST00000536011 IL6STP40189 918 aaPredicted RBP17.46■□□□□ 0.39
RTN3-207ENST00000536011 NRXN2Q9P2S2 1712 aa17.45■□□□□ 0.38
RTN3-207ENST00000536011 ZNF330Q9Y3S2 320 aaPredicted RBP17.45■□□□□ 0.38
RTN3-207ENST00000536011 SCN7AQ01118 1682 aa17.45■□□□□ 0.38
RTN3-207ENST00000536011 SERPINB2P05120 415 aa17.44■□□□□ 0.38
RTN3-207ENST00000536011 BCL2L12Q9HB09 334 aa17.44■□□□□ 0.38
RTN3-207ENST00000536011 AFDNP55196 1824 aaKnown RBP17.44■□□□□ 0.38
RTN3-207ENST00000536011 CEP350Q5VT06 3117 aa17.43■□□□□ 0.38
RTN3-207ENST00000536011 CHRNA5P30532 468 aa17.43■□□□□ 0.38
RTN3-207ENST00000536011 PNNQ9H307 717 aaKnown RBP17.43■□□□□ 0.38
RTN3-207ENST00000536011 CARMIL3Q8ND23 1372 aa17.42■□□□□ 0.38
RTN3-207ENST00000536011 MCM10Q7L590 875 aa17.42■□□□□ 0.38
RTN3-207ENST00000536011 PDZRN3Q9UPQ7 1066 aa17.42■□□□□ 0.38
RTN3-207ENST00000536011 SNRPA1P09661 255 aaKnown RBP17.41■□□□□ 0.38
RTN3-207ENST00000536011 H0YIN7 160 aa17.4■□□□□ 0.38
RTN3-207ENST00000536011 C9orf131Q5VYM1 1079 aa17.4■□□□□ 0.38
RTN3-207ENST00000536011 BICDL1Q6ZP65 573 aa17.4■□□□□ 0.38
RTN3-207ENST00000536011 DLEC1Q9Y238 1755 aa17.4■□□□□ 0.38
RTN3-207ENST00000536011 NPHP1O15259 732 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 A1BGP04217 495 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 TAF7Q15545 349 aaPredicted RBP17.39■□□□□ 0.37
RTN3-207ENST00000536011 C2CD5Q86YS7 1000 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 TTLL6Q8N841 843 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 PNISRQ8TF01 805 aaKnown RBP17.39■□□□□ 0.37
RTN3-207ENST00000536011 SETDB2Q96T68 719 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 TBC1D2BQ9UPU7 963 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 ZNF652Q9Y2D9 606 aa17.39■□□□□ 0.37
RTN3-207ENST00000536011 KCNQ3O43525 872 aa17.38■□□□□ 0.37
RTN3-207ENST00000536011 PDE6BP35913 854 aa17.38■□□□□ 0.37
RTN3-207ENST00000536011 TBC1D9BQ66K14 1250 aa17.38■□□□□ 0.37
RTN3-207ENST00000536011 DZIP3Q86Y13 1208 aaKnown RBP17.38■□□□□ 0.37
RTN3-207ENST00000536011 MAPK8IP3Q9UPT6 1336 aa17.38■□□□□ 0.37
RTN3-207ENST00000536011 KIF3CO14782 793 aa17.37■□□□□ 0.37
RTN3-207ENST00000536011 CNBD1Q8NA66 436 aa17.37■□□□□ 0.37
RTN3-207ENST00000536011 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
RTN3-207ENST00000536011 RNF181Q9P0P0 153 aa17.37■□□□□ 0.37
RTN3-207ENST00000536011 KDM2BQ8NHM5 1336 aa17.37■□□□□ 0.37
RTN3-207ENST00000536011 ZC3H4Q9UPT8 1303 aaKnown RBP17.37■□□□□ 0.37
RTN3-207ENST00000536011 BCORQ6W2J9 1755 aa17.37■□□□□ 0.37
RTN3-207ENST00000536011 RGL2O15211 777 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 CAMTA2O94983 1202 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 ST5P78524 1137 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 DCTN1Q14203 1278 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 RALBP1Q15311 655 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 CLEC4GQ6UXB4 293 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 USP16Q9Y5T5 823 aa17.36■□□□□ 0.37
RTN3-207ENST00000536011 HSPA6P17066 643 aa17.35■□□□□ 0.37
RTN3-207ENST00000536011 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
RTN3-207ENST00000536011 PRR5LQ6MZQ0 368 aa17.35■□□□□ 0.37
RTN3-207ENST00000536011 LAMB4A4D0S4 1761 aa17.34■□□□□ 0.37
RTN3-207ENST00000536011 TOMM70O94826 608 aa17.34■□□□□ 0.37
RTN3-207ENST00000536011 C16orf71Q8IYS4 520 aaPredicted RBP17.34■□□□□ 0.37
RTN3-207ENST00000536011 LMNB1P20700 586 aa17.33■□□□□ 0.36
RTN3-207ENST00000536011 PLEKHF1Q96S99 279 aa17.33■□□□□ 0.36
RTN3-207ENST00000536011 DLG5Q8TDM6 1919 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms