RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 U2AF1L5P0DN76 240 aaPredicted RBP17.66■□□□□ 0.42
CLSTN3-205ENST00000535452 U2AF1Q01081 240 aaKnown RBP eCLIP17.66■□□□□ 0.42
CLSTN3-205ENST00000535452 MRC1P22897 1456 aa17.66■□□□□ 0.42
CLSTN3-205ENST00000535452 ADCY9O60503 1353 aa17.66■□□□□ 0.42
CLSTN3-205ENST00000535452 ZBTB1Q9Y2K1 713 aa17.65■□□□□ 0.42
CLSTN3-205ENST00000535452 KDM2BQ8NHM5 1336 aa17.65■□□□□ 0.42
CLSTN3-205ENST00000535452 BTBD11A6QL63 1104 aa17.64■□□□□ 0.41
CLSTN3-205ENST00000535452 PRKAR2BP31323 418 aa17.64■□□□□ 0.41
CLSTN3-205ENST00000535452 ZNF790Q6PG37 636 aa17.64■□□□□ 0.41
CLSTN3-205ENST00000535452 H0YIN7 160 aa17.63■□□□□ 0.41
CLSTN3-205ENST00000535452 POLRMTO00411 1230 aaKnown RBP17.63■□□□□ 0.41
CLSTN3-205ENST00000535452 PDZRN3Q9UPQ7 1066 aa17.63■□□□□ 0.41
CLSTN3-205ENST00000535452 TJP1Q07157 1748 aa17.63■□□□□ 0.41
CLSTN3-205ENST00000535452 SERPINB2P05120 415 aa17.62■□□□□ 0.41
CLSTN3-205ENST00000535452 HSPA6P17066 643 aa17.62■□□□□ 0.41
CLSTN3-205ENST00000535452 DDR1Q08345 913 aa17.62■□□□□ 0.41
CLSTN3-205ENST00000535452 BICDL1Q6ZP65 573 aa17.62■□□□□ 0.41
CLSTN3-205ENST00000535452 PNNQ9H307 717 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-205ENST00000535452 KIF13BQ9NQT8 1826 aa17.62■□□□□ 0.41
CLSTN3-205ENST00000535452 N4BP2Q86UW6 1770 aaPredicted RBP17.61■□□□□ 0.41
CLSTN3-205ENST00000535452 TM4SF1P30408 202 aa17.61■□□□□ 0.41
CLSTN3-205ENST00000535452 NFIXQ14938 502 aa17.61■□□□□ 0.41
CLSTN3-205ENST00000535452 C9orf131Q5VYM1 1079 aa17.61■□□□□ 0.41
CLSTN3-205ENST00000535452 HEG1Q9ULI3 1381 aa17.61■□□□□ 0.41
CLSTN3-205ENST00000535452 MYH14Q7Z406 1995 aaKnown RBP17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 TOMM70O94826 608 aa17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 CHRNA5P30532 468 aa17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 PDE6BP35913 854 aa17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 IL6STP40189 918 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 ZNF496Q96IT1 587 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 RNF181Q9P0P0 153 aa17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 ZNF652Q9Y2D9 606 aa17.6■□□□□ 0.41
CLSTN3-205ENST00000535452 ST5P78524 1137 aa17.59■□□□□ 0.41
CLSTN3-205ENST00000535452 C2CD5Q86YS7 1000 aa17.59■□□□□ 0.41
CLSTN3-205ENST00000535452 TTLL6Q8N841 843 aa17.59■□□□□ 0.41
CLSTN3-205ENST00000535452 IL17REQ8NFR9 667 aa17.59■□□□□ 0.41
CLSTN3-205ENST00000535452 SETDB2Q96T68 719 aa17.59■□□□□ 0.41
CLSTN3-205ENST00000535452 KCPQ6ZWJ8 1503 aa17.58■□□□□ 0.41
CLSTN3-205ENST00000535452 PPP2R1AP30153 589 aa17.58■□□□□ 0.4
CLSTN3-205ENST00000535452 COL3A1P02461 1466 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-205ENST00000535452 CARMIL3Q8ND23 1372 aa17.57■□□□□ 0.4
CLSTN3-205ENST00000535452 EIF5P55010 431 aaKnown RBP17.57■□□□□ 0.4
CLSTN3-205ENST00000535452 RSPH6AQ9H0K4 717 aa17.57■□□□□ 0.4
CLSTN3-205ENST00000535452 GOLGB1Q14789 3259 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-205ENST00000535452 HTATSF1O43719 755 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-205ENST00000535452 KCNA3P22001 575 aa17.56■□□□□ 0.4
CLSTN3-205ENST00000535452 APLP1P51693 650 aa17.56■□□□□ 0.4
CLSTN3-205ENST00000535452 ZNF622Q969S3 477 aaKnown RBP eCLIP17.56■□□□□ 0.4
CLSTN3-205ENST00000535452 MAPK8IP3Q9UPT6 1336 aa17.55■□□□□ 0.4
CLSTN3-205ENST00000535452 ZC3H4Q9UPT8 1303 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-205ENST00000535452 SNRPA1P09661 255 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-205ENST00000535452 CNBD1Q8NA66 436 aa17.55■□□□□ 0.4
CLSTN3-205ENST00000535452 TBC1D2BQ9UPU7 963 aa17.55■□□□□ 0.4
CLSTN3-205ENST00000535452 VIRMAQ69YN4 1812 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 KIF3CO14782 793 aa17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 LMNB1P20700 586 aa17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 DZIP3Q86Y13 1208 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 PNISRQ8TF01 805 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 BRIP1Q9BX63 1249 aa17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 ADAMTS7Q9UKP4 1686 aa17.54■□□□□ 0.4
CLSTN3-205ENST00000535452 GTF2E1P29083 439 aaPredicted RBP17.53■□□□□ 0.4
CLSTN3-205ENST00000535452 SOGA3Q5TF21 947 aa17.53■□□□□ 0.4
CLSTN3-205ENST00000535452 DPY19L2Q6NUT2 758 aa17.53■□□□□ 0.4
CLSTN3-205ENST00000535452 PHACTR3Q96KR7 559 aa17.53■□□□□ 0.4
CLSTN3-205ENST00000535452 CEMIPQ8WUJ3 1361 aa17.53■□□□□ 0.4
CLSTN3-205ENST00000535452 ARFGEF1Q9Y6D6 1849 aa17.52■□□□□ 0.4
CLSTN3-205ENST00000535452 TBC1D9BQ66K14 1250 aa17.52■□□□□ 0.4
CLSTN3-205ENST00000535452 MCM10Q7L590 875 aa17.52■□□□□ 0.4
CLSTN3-205ENST00000535452 RBM46Q8TBY0 533 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-205ENST00000535452 CNKSR1Q969H4 720 aa17.52■□□□□ 0.4
CLSTN3-205ENST00000535452 KIAA1551Q9HCM1 1747 aa17.52■□□□□ 0.39
CLSTN3-205ENST00000535452 UBR2Q8IWV8 1755 aa17.51■□□□□ 0.39
CLSTN3-205ENST00000535452 A1BGP04217 495 aa17.51■□□□□ 0.39
CLSTN3-205ENST00000535452 TAF7Q15545 349 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-205ENST00000535452 NBPF5PQ86XG9 351 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-205ENST00000535452 NMRK2Q9NPI5 230 aa17.51■□□□□ 0.39
CLSTN3-205ENST00000535452 FSTL1Q12841 308 aa17.5■□□□□ 0.39
CLSTN3-205ENST00000535452 BCL2L12Q9HB09 334 aa17.5■□□□□ 0.39
CLSTN3-205ENST00000535452 CLEC4GQ6UXB4 293 aa17.49■□□□□ 0.39
CLSTN3-205ENST00000535452 BRCA1P38398 1863 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-205ENST00000535452 PRR5LQ6MZQ0 368 aa17.48■□□□□ 0.39
CLSTN3-205ENST00000535452 TPTE2Q6XPS3 522 aa17.48■□□□□ 0.39
CLSTN3-205ENST00000535452 SMC1BQ8NDV3 1235 aa17.48■□□□□ 0.39
CLSTN3-205ENST00000535452 RRAGCQ9HB90 399 aa17.48■□□□□ 0.39
CLSTN3-205ENST00000535452 RASSF7Q02833 373 aa17.47■□□□□ 0.39
CLSTN3-205ENST00000535452 ZNF219Q9P2Y4 722 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-205ENST00000535452 CAMTA2O94983 1202 aa17.46■□□□□ 0.39
CLSTN3-205ENST00000535452 VEGFAP15692 232 aaPredicted RBP17.46■□□□□ 0.39
CLSTN3-205ENST00000535452 KIF6Q6ZMV9 814 aa17.46■□□□□ 0.39
CLSTN3-205ENST00000535452 MASTLQ96GX5 879 aa17.46■□□□□ 0.39
CLSTN3-205ENST00000535452 TAOK3Q9H2K8 898 aa17.46■□□□□ 0.39
CLSTN3-205ENST00000535452 USP16Q9Y5T5 823 aa17.46■□□□□ 0.39
CLSTN3-205ENST00000535452 GLTPD2A6NH11 291 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 RGL2O15211 777 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 KCNQ3O43525 872 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 C21orf2O43822 256 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 DCTN1Q14203 1278 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 ERFEQ4G0M1 354 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 STYK1Q6J9G0 422 aa17.45■□□□□ 0.38
CLSTN3-205ENST00000535452 NIP7Q9Y221 180 aaKnown RBP eCLIP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms