RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 NGDNQ8NEJ9 315 aaKnown RBP23.16■■□□□ 1.3
SMPD1-210ENST00000534405 TSPYL4Q9UJ04 414 aa23.16■■□□□ 1.3
SMPD1-210ENST00000534405 DIP2AQ14689 1571 aa23.15■■□□□ 1.3
SMPD1-210ENST00000534405 ARHGAP23Q9P227 1491 aa23.15■■□□□ 1.3
SMPD1-210ENST00000534405 ZBTB7CA1YPR0 619 aa23.15■■□□□ 1.3
SMPD1-210ENST00000534405 F6X3S4 739 aa23.15■■□□□ 1.3
SMPD1-210ENST00000534405 DIAPH3Q9NSV4 1193 aa23.14■■□□□ 1.3
SMPD1-210ENST00000534405 TBX22Q9Y458 520 aa23.14■■□□□ 1.3
SMPD1-210ENST00000534405 PIK3C2AO00443 1686 aa23.14■■□□□ 1.3
SMPD1-210ENST00000534405 IGSF1Q8N6C5 1336 aa23.14■■□□□ 1.3
SMPD1-210ENST00000534405 SLIT1O75093 1534 aa23.14■■□□□ 1.29
SMPD1-210ENST00000534405 TEX2Q8IWB9 1127 aa23.14■■□□□ 1.29
SMPD1-210ENST00000534405 RTF1Q92541 710 aaKnown RBP23.14■■□□□ 1.29
SMPD1-210ENST00000534405 AMPHP49418 695 aa23.13■■□□□ 1.29
SMPD1-210ENST00000534405 RNF214Q8ND24 703 aa23.13■■□□□ 1.29
SMPD1-210ENST00000534405 CHRM1P11229 460 aaPredicted RBP23.13■■□□□ 1.29
SMPD1-210ENST00000534405 TIGD1Q96MW7 591 aa23.13■■□□□ 1.29
SMPD1-210ENST00000534405 IRX3P78415 501 aaPredicted RBP23.11■■□□□ 1.29
SMPD1-210ENST00000534405 SLC4A10Q6U841 1118 aa23.11■■□□□ 1.29
SMPD1-210ENST00000534405 TSPY26PQ9H489 355 aa23.11■■□□□ 1.29
SMPD1-210ENST00000534405 TULP2O00295 520 aa23.11■■□□□ 1.29
SMPD1-210ENST00000534405 CWC22Q9HCG8 908 aaKnown RBP23.11■■□□□ 1.29
SMPD1-210ENST00000534405 MBD3O95983 291 aa23.1■■□□□ 1.29
SMPD1-210ENST00000534405 SDSP20132 328 aa23.1■■□□□ 1.29
SMPD1-210ENST00000534405 AK9Q5TCS8 1911 aa23.1■■□□□ 1.29
SMPD1-210ENST00000534405 RIOK3O14730 519 aaKnown RBP23.1■■□□□ 1.29
SMPD1-210ENST00000534405 NUTM2GQ5VZR2 741 aa23.1■■□□□ 1.29
SMPD1-210ENST00000534405 ZFP91Q96JP5 570 aaPredicted RBP23.09■■□□□ 1.29
SMPD1-210ENST00000534405 NLRP6P59044 892 aa23.09■■□□□ 1.29
SMPD1-210ENST00000534405 USP26Q9BXU7 913 aa23.09■■□□□ 1.29
SMPD1-210ENST00000534405 PKP1Q13835 747 aa23.08■■□□□ 1.29
SMPD1-210ENST00000534405 SYCP1Q15431 976 aa23.08■■□□□ 1.28
SMPD1-210ENST00000534405 UVSSAQ2YD98 709 aa23.08■■□□□ 1.28
SMPD1-210ENST00000534405 CTNNA3Q9UI47 895 aa23.08■■□□□ 1.28
SMPD1-210ENST00000534405 NSFL1CQ9UNZ2 370 aaKnown RBP23.08■■□□□ 1.28
SMPD1-210ENST00000534405 CHAF1AQ13111 956 aaPredicted RBP23.07■■□□□ 1.28
SMPD1-210ENST00000534405 C17orf53Q8N3J3 647 aaPredicted RBP23.07■■□□□ 1.28
SMPD1-210ENST00000534405 RABEP1Q15276 862 aa23.06■■□□□ 1.28
SMPD1-210ENST00000534405 DDX41Q9UJV9 622 aaKnown RBP23.06■■□□□ 1.28
SMPD1-210ENST00000534405 TERF2Q15554 542 aa23.06■■□□□ 1.28
SMPD1-210ENST00000534405 TTC12Q9H892 705 aaPredicted RBP23.06■■□□□ 1.28
SMPD1-210ENST00000534405 MARF1Q9Y4F3 1742 aaKnown RBP23.05■■□□□ 1.28
SMPD1-210ENST00000534405 HOXC9P31274 260 aa23.05■■□□□ 1.28
SMPD1-210ENST00000534405 CCT4P50991 539 aaKnown RBP23.05■■□□□ 1.28
SMPD1-210ENST00000534405 LRRC37A3O60309 1634 aa23.05■■□□□ 1.28
SMPD1-210ENST00000534405 NWD1Q149M9 1564 aa23.05■■□□□ 1.28
SMPD1-210ENST00000534405 RGS22Q8NE09 1264 aa23.04■■□□□ 1.28
SMPD1-210ENST00000534405 MORC2Q9Y6X9 1032 aaPredicted RBP23.04■■□□□ 1.28
SMPD1-210ENST00000534405 XRN1Q8IZH2 1706 aaKnown RBP23.04■■□□□ 1.28
SMPD1-210ENST00000534405 KCNA6P17658 529 aa23.04■■□□□ 1.28
SMPD1-210ENST00000534405 NECTIN2Q92692 538 aa23.04■■□□□ 1.28
SMPD1-210ENST00000534405 ZDHHC9Q9Y397 364 aa23.04■■□□□ 1.28
SMPD1-210ENST00000534405 CAPN2P17655 700 aa23.03■■□□□ 1.28
SMPD1-210ENST00000534405 FAM184AQ8NB25 1140 aa23.03■■□□□ 1.28
SMPD1-210ENST00000534405 CALCOCO1Q9P1Z2 691 aa23.03■■□□□ 1.28
SMPD1-210ENST00000534405 TSPYL1Q9H0U9 437 aa23.03■■□□□ 1.28
SMPD1-210ENST00000534405 HMMRO75330 724 aa23.02■■□□□ 1.28
SMPD1-210ENST00000534405 NCBP1Q09161 790 aaKnown RBP23.02■■□□□ 1.28
SMPD1-210ENST00000534405 GNAT3A8MTJ3 354 aa23.02■■□□□ 1.28
SMPD1-210ENST00000534405 FLIIQ13045 1269 aa23.02■■□□□ 1.28
SMPD1-210ENST00000534405 THEMISQ8N1K5 641 aaPredicted RBP23.02■■□□□ 1.28
SMPD1-210ENST00000534405 IL17REQ8NFR9 667 aa23.02■■□□□ 1.28
SMPD1-210ENST00000534405 STK31Q9BXU1 1019 aa23.01■■□□□ 1.27
SMPD1-210ENST00000534405 EXOC6BQ9Y2D4 811 aa23.01■■□□□ 1.27
SMPD1-210ENST00000534405 HTATSF1O43719 755 aaKnown RBP23.01■■□□□ 1.27
SMPD1-210ENST00000534405 LTV1Q96GA3 475 aaPredicted RBP23.01■■□□□ 1.27
SMPD1-210ENST00000534405 FAM208AQ9UK61 1670 aaKnown RBP23■■□□□ 1.27
SMPD1-210ENST00000534405 KIAA1524Q8TCG1 905 aa23■■□□□ 1.27
SMPD1-210ENST00000534405 GNAI2P04899 355 aa23■■□□□ 1.27
SMPD1-210ENST00000534405 PDE1AP54750 535 aa23■■□□□ 1.27
SMPD1-210ENST00000534405 FAM193AP78312 1265 aa23■■□□□ 1.27
SMPD1-210ENST00000534405 MAPK8IP2Q13387 824 aaPredicted RBP23■■□□□ 1.27
SMPD1-210ENST00000534405 ANKARQ7Z5J8 1434 aa22.99■■□□□ 1.27
SMPD1-210ENST00000534405 TSHZ3Q63HK5 1081 aa22.99■■□□□ 1.27
SMPD1-210ENST00000534405 SYAP1Q96A49 352 aaPredicted RBP22.99■■□□□ 1.27
SMPD1-210ENST00000534405 MPNDQ8N594 471 aa22.99■■□□□ 1.27
SMPD1-210ENST00000534405 CHMP4AQ9BY43 222 aa22.99■■□□□ 1.27
SMPD1-210ENST00000534405 OSBPL3Q9H4L5 887 aa22.99■■□□□ 1.27
SMPD1-210ENST00000534405 PNMA6EA0A0J9YXQ4 647 aa22.98■■□□□ 1.27
SMPD1-210ENST00000534405 CCDC30Q5VVM6 783 aa22.98■■□□□ 1.27
SMPD1-210ENST00000534405 ABTB2Q8N961 1025 aa22.98■■□□□ 1.27
SMPD1-210ENST00000534405 FER1L4A9Z1Z3 1794 aa22.98■■□□□ 1.27
SMPD1-210ENST00000534405 USHBP1Q8N6Y0 703 aa22.98■■□□□ 1.27
SMPD1-210ENST00000534405 MAP3K5Q99683 1374 aa22.97■■□□□ 1.27
SMPD1-210ENST00000534405 SALL3Q9BXA9 1300 aa22.97■■□□□ 1.27
SMPD1-210ENST00000534405 ADCY5O95622 1261 aa22.97■■□□□ 1.27
SMPD1-210ENST00000534405 USP25Q9UHP3 1055 aa22.97■■□□□ 1.27
SMPD1-210ENST00000534405 PHF14O94880 888 aa22.96■■□□□ 1.27
SMPD1-210ENST00000534405 CASC1Q6TDU7 716 aa22.96■■□□□ 1.27
SMPD1-210ENST00000534405 CREBRFQ8IUR6 639 aa22.94■■□□□ 1.26
SMPD1-210ENST00000534405 TRIM6-TRIM34B2RNG4 842 aa22.94■■□□□ 1.26
SMPD1-210ENST00000534405 ZGPATQ8N5A5 531 aaKnown RBP22.94■■□□□ 1.26
SMPD1-210ENST00000534405 KIF18AQ8NI77 898 aa22.94■■□□□ 1.26
SMPD1-210ENST00000534405 SECISBP2LQ93073 1101 aaKnown RBP22.94■■□□□ 1.26
SMPD1-210ENST00000534405 TRIM34Q9BYJ4 488 aa22.94■■□□□ 1.26
SMPD1-210ENST00000534405 ERC2O15083 957 aa22.93■■□□□ 1.26
SMPD1-210ENST00000534405 TAF7Q15545 349 aaPredicted RBP22.93■■□□□ 1.26
SMPD1-210ENST00000534405 USP54Q70EL1 1684 aa22.93■■□□□ 1.26
SMPD1-210ENST00000534405 KRT222Q8N1A0 295 aa22.93■■□□□ 1.26
SMPD1-210ENST00000534405 REC8O95072 547 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms