RNA–Protein interactions for RNA: ENST00000534373.5

CAPN1-228, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-228ENST00000534373 UBR2Q8IWV8 1755 aa17.84■□□□□ 0.45
CAPN1-228ENST00000534373 BTBD11A6QL63 1104 aa17.84■□□□□ 0.45
CAPN1-228ENST00000534373 USPL1Q5W0Q7 1092 aa17.84■□□□□ 0.45
CAPN1-228ENST00000534373 PXDNLA1KZ92 1463 aa17.83■□□□□ 0.45
CAPN1-228ENST00000534373 COL15A1P39059 1388 aa17.83■□□□□ 0.45
CAPN1-228ENST00000534373 A0A087WZG4 1122 aa17.83■□□□□ 0.44
CAPN1-228ENST00000534373 NEFMP07197 916 aa17.83■□□□□ 0.44
CAPN1-228ENST00000534373 EIF5P55010 431 aaKnown RBP17.83■□□□□ 0.44
CAPN1-228ENST00000534373 A0A0G2JLW4 131 aa17.82■□□□□ 0.44
CAPN1-228ENST00000534373 POLRMTO00411 1230 aaKnown RBP17.82■□□□□ 0.44
CAPN1-228ENST00000534373 DDR1Q08345 913 aa17.82■□□□□ 0.44
CAPN1-228ENST00000534373 PNNQ9H307 717 aaKnown RBP17.82■□□□□ 0.44
CAPN1-228ENST00000534373 SIPA1L3O60292 1781 aaPredicted RBP17.81■□□□□ 0.44
CAPN1-228ENST00000534373 CANXP27824 592 aaKnown RBP17.81■□□□□ 0.44
CAPN1-228ENST00000534373 RALBP1Q15311 655 aa17.81■□□□□ 0.44
CAPN1-228ENST00000534373 DPEP1P16444 411 aa17.8■□□□□ 0.44
CAPN1-228ENST00000534373 IL6STP40189 918 aaPredicted RBP17.8■□□□□ 0.44
CAPN1-228ENST00000534373 KCNA3P22001 575 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 NFIXQ14938 502 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 MCM10Q7L590 875 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 BCL2L12Q9HB09 334 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 PIM2Q9P1W9 311 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 WWC3Q9ULE0 1092 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 BCS1LQ9Y276 419 aa17.79■□□□□ 0.44
CAPN1-228ENST00000534373 TAF7Q15545 349 aaPredicted RBP17.78■□□□□ 0.44
CAPN1-228ENST00000534373 NPM2Q86SE8 214 aaKnown RBP17.78■□□□□ 0.44
CAPN1-228ENST00000534373 PLEKHF1Q96S99 279 aa17.78■□□□□ 0.44
CAPN1-228ENST00000534373 KIAA1551Q9HCM1 1747 aa17.78■□□□□ 0.44
CAPN1-228ENST00000534373 KCNQ3O43525 872 aa17.77■□□□□ 0.44
CAPN1-228ENST00000534373 SNRPA1P09661 255 aaKnown RBP17.77■□□□□ 0.44
CAPN1-228ENST00000534373 C1QTNF8P60827 252 aa17.77■□□□□ 0.44
CAPN1-228ENST00000534373 N4BP2Q86UW6 1770 aaPredicted RBP17.76■□□□□ 0.43
CAPN1-228ENST00000534373 GIGYF1O75420 1035 aaPredicted RBP17.76■□□□□ 0.43
CAPN1-228ENST00000534373 ADCY9O60503 1353 aa17.76■□□□□ 0.43
CAPN1-228ENST00000534373 ATP10DQ9P241 1426 aa17.75■□□□□ 0.43
CAPN1-228ENST00000534373 A1BGP04217 495 aa17.75■□□□□ 0.43
CAPN1-228ENST00000534373 SERPINB2P05120 415 aa17.75■□□□□ 0.43
CAPN1-228ENST00000534373 DCTN1Q14203 1278 aa17.75■□□□□ 0.43
CAPN1-228ENST00000534373 DALRD3Q5D0E6 543 aaKnown RBP17.75■□□□□ 0.43
CAPN1-228ENST00000534373 PNISRQ8TF01 805 aaKnown RBP17.75■□□□□ 0.43
CAPN1-228ENST00000534373 USP16Q9Y5T5 823 aa17.75■□□□□ 0.43
CAPN1-228ENST00000534373 DDX10Q13206 875 aaKnown RBP17.74■□□□□ 0.43
CAPN1-228ENST00000534373 NFE2L2Q16236 605 aa17.73■□□□□ 0.43
CAPN1-228ENST00000534373 ARHGAP27Q6ZUM4 889 aa17.73■□□□□ 0.43
CAPN1-228ENST00000534373 GPBP1L1Q9HC44 474 aaPredicted RBP17.73■□□□□ 0.43
CAPN1-228ENST00000534373 PDZRN3Q9UPQ7 1066 aa17.73■□□□□ 0.43
CAPN1-228ENST00000534373 TBC1D2BQ9UPU7 963 aa17.73■□□□□ 0.43
CAPN1-228ENST00000534373 ZNF330Q9Y3S2 320 aaPredicted RBP17.72■□□□□ 0.43
CAPN1-228ENST00000534373 MAPK8IP3Q9UPT6 1336 aa17.72■□□□□ 0.43
CAPN1-228ENST00000534373 BRCA1P38398 1863 aaKnown RBP17.71■□□□□ 0.43
CAPN1-228ENST00000534373 RGL2O15211 777 aa17.71■□□□□ 0.43
CAPN1-228ENST00000534373 CHRNA5P30532 468 aa17.71■□□□□ 0.43
CAPN1-228ENST00000534373 TBC1D9BQ66K14 1250 aa17.71■□□□□ 0.43
CAPN1-228ENST00000534373 CLEC4GQ6UXB4 293 aa17.71■□□□□ 0.43
CAPN1-228ENST00000534373 NRXN2Q9P2S2 1712 aa17.71■□□□□ 0.43
CAPN1-228ENST00000534373 CAMTA2O94983 1202 aa17.7■□□□□ 0.42
CAPN1-228ENST00000534373 BICDL1Q6ZP65 573 aa17.7■□□□□ 0.42
CAPN1-228ENST00000534373 DZIP3Q86Y13 1208 aaKnown RBP17.7■□□□□ 0.42
CAPN1-228ENST00000534373 SETDB2Q96T68 719 aa17.7■□□□□ 0.42
CAPN1-228ENST00000534373 MYBBP1AQ9BQG0 1328 aaKnown RBP17.7■□□□□ 0.42
CAPN1-228ENST00000534373 BRIP1Q9BX63 1249 aa17.69■□□□□ 0.42
CAPN1-228ENST00000534373 AFDNP55196 1824 aaKnown RBP17.69■□□□□ 0.42
CAPN1-228ENST00000534373 CARMIL3Q8ND23 1372 aa17.68■□□□□ 0.42
CAPN1-228ENST00000534373 ARFGEF1Q9Y6D6 1849 aa17.68■□□□□ 0.42
CAPN1-228ENST00000534373 PRAMEF22A3QJZ6 481 aa17.68■□□□□ 0.42
CAPN1-228ENST00000534373 H0YIN7 160 aa17.68■□□□□ 0.42
CAPN1-228ENST00000534373 ZNF652Q9Y2D9 606 aa17.68■□□□□ 0.42
CAPN1-228ENST00000534373 PDE6BP35913 854 aa17.67■□□□□ 0.42
CAPN1-228ENST00000534373 TTLL6Q8N841 843 aa17.67■□□□□ 0.42
CAPN1-228ENST00000534373 MIS18AQ9NYP9 233 aa17.67■□□□□ 0.42
CAPN1-228ENST00000534373 EIF4A1P60842 406 aaKnown RBP17.66■□□□□ 0.42
CAPN1-228ENST00000534373 PRR5LQ6MZQ0 368 aa17.66■□□□□ 0.42
CAPN1-228ENST00000534373 C2CD5Q86YS7 1000 aa17.66■□□□□ 0.42
CAPN1-228ENST00000534373 BABAM1Q9NWV8 329 aa17.66■□□□□ 0.42
CAPN1-228ENST00000534373 SCN7AQ01118 1682 aa17.65■□□□□ 0.42
CAPN1-228ENST00000534373 DLG5Q8TDM6 1919 aa17.65■□□□□ 0.42
CAPN1-228ENST00000534373 NBPF26B4DH59 902 aa17.65■□□□□ 0.42
CAPN1-228ENST00000534373 RIPK4P57078 832 aa17.65■□□□□ 0.42
CAPN1-228ENST00000534373 LMOD3Q0VAK6 560 aa17.65■□□□□ 0.42
CAPN1-228ENST00000534373 NBPF10Q6P3W6 841 aaKnown RBP17.65■□□□□ 0.42
CAPN1-228ENST00000534373 NBPF15Q8N660 670 aa17.65■□□□□ 0.42
CAPN1-228ENST00000534373 ZNF526Q8TF50 670 aaPredicted RBP17.65■□□□□ 0.42
CAPN1-228ENST00000534373 PIP4K2AP48426 406 aaPredicted RBP17.64■□□□□ 0.41
CAPN1-228ENST00000534373 C9orf131Q5VYM1 1079 aa17.64■□□□□ 0.41
CAPN1-228ENST00000534373 CNBD1Q8NA66 436 aa17.64■□□□□ 0.41
CAPN1-228ENST00000534373 TMPOP42166 694 aaKnown RBP17.63■□□□□ 0.41
CAPN1-228ENST00000534373 ST5P78524 1137 aa17.63■□□□□ 0.41
CAPN1-228ENST00000534373 THUMPD2Q9BTF0 503 aaKnown RBP17.63■□□□□ 0.41
CAPN1-228ENST00000534373 SENP3-EIF4A1A0A087X0R7 540 aa17.62■□□□□ 0.41
CAPN1-228ENST00000534373 NPHP1O15259 732 aa17.62■□□□□ 0.41
CAPN1-228ENST00000534373 ERVV-1B6SEH8 477 aa17.61■□□□□ 0.41
CAPN1-228ENST00000534373 TPTE2Q6XPS3 522 aa17.61■□□□□ 0.41
CAPN1-228ENST00000534373 KDM3BQ7LBC6 1761 aa17.61■□□□□ 0.41
CAPN1-228ENST00000534373 DLEC1Q9Y238 1755 aa17.61■□□□□ 0.41
CAPN1-228ENST00000534373 KIF3CO14782 793 aa17.6■□□□□ 0.41
CAPN1-228ENST00000534373 WDR43Q15061 677 aaKnown RBP eCLIP17.6■□□□□ 0.41
CAPN1-228ENST00000534373 NBPF5PQ86XG9 351 aaPredicted RBP17.6■□□□□ 0.41
CAPN1-228ENST00000534373 ZNF622Q969S3 477 aaKnown RBP eCLIP17.6■□□□□ 0.41
CAPN1-228ENST00000534373 RUNDC1Q96C34 613 aa17.6■□□□□ 0.41
CAPN1-228ENST00000534373 PRKRIP1Q9H875 184 aaPredicted RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms