RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 AKAP4Q5JQC9 854 aa21.36■■□□□ 1.01
CHMP4A-207ENST00000533523 TNS4Q8IZW8 715 aa21.36■■□□□ 1.01
CHMP4A-207ENST00000533523 RRAGCQ9HB90 399 aa21.36■■□□□ 1.01
CHMP4A-207ENST00000533523 CHRNA5P30532 468 aa21.35■■□□□ 1.01
CHMP4A-207ENST00000533523 PIM2Q9P1W9 311 aa21.35■■□□□ 1.01
CHMP4A-207ENST00000533523 SLC52A2Q9HAB3 445 aa21.34■■□□□ 1.01
CHMP4A-207ENST00000533523 RNF181Q9P0P0 153 aa21.34■■□□□ 1.01
CHMP4A-207ENST00000533523 RASSF7Q02833 373 aa21.33■■□□□ 1.01
CHMP4A-207ENST00000533523 DALRD3Q5D0E6 543 aaKnown RBP21.33■■□□□ 1.01
CHMP4A-207ENST00000533523 INTS5Q6P9B9 1019 aaKnown RBP21.33■■□□□ 1.01
CHMP4A-207ENST00000533523 DNAJC10Q8IXB1 793 aa21.33■■□□□ 1.01
CHMP4A-207ENST00000533523 ZPR1O75312 459 aa21.32■■□□□ 1
CHMP4A-207ENST00000533523 HMOX1P09601 288 aa21.32■■□□□ 1
CHMP4A-207ENST00000533523 AMER1Q5JTC6 1135 aaPredicted RBP21.32■■□□□ 1
CHMP4A-207ENST00000533523 COL15A1P39059 1388 aa21.32■■□□□ 1
CHMP4A-207ENST00000533523 SOS1Q07889 1333 aaPredicted RBP21.31■■□□□ 1
CHMP4A-207ENST00000533523 POLRMTO00411 1230 aaKnown RBP21.31■■□□□ 1
CHMP4A-207ENST00000533523 SLC39A6Q13433 755 aa21.31■■□□□ 1
CHMP4A-207ENST00000533523 USPL1Q5W0Q7 1092 aa21.31■■□□□ 1
CHMP4A-207ENST00000533523 LGR6Q9HBX8 967 aa21.31■■□□□ 1
CHMP4A-207ENST00000533523 RNMTO43148 476 aaKnown RBP21.3■■□□□ 1
CHMP4A-207ENST00000533523 HSPA1AP0DMV8 641 aaKnown RBP21.3■■□□□ 1
CHMP4A-207ENST00000533523 HSPA1BP0DMV9 641 aaKnown RBP21.3■■□□□ 1
CHMP4A-207ENST00000533523 ANKRD31Q8N7Z5 1873 aa21.3■■□□□ 1
CHMP4A-207ENST00000533523 C16orf71Q8IYS4 520 aaPredicted RBP21.29■■□□□ 1
CHMP4A-207ENST00000533523 COL11A2P13942 1736 aaPredicted RBP21.29■■□□□ 1
CHMP4A-207ENST00000533523 KIF7Q2M1P5 1343 aa21.29■■□□□ 1
CHMP4A-207ENST00000533523 SCN7AQ01118 1682 aa21.28■■□□□ 1
CHMP4A-207ENST00000533523 SIPA1L3O60292 1781 aaPredicted RBP21.28■■□□□ 1
CHMP4A-207ENST00000533523 POTECB2RU33 542 aa21.27■■□□□ 1
CHMP4A-207ENST00000533523 CYP19A1P11511 503 aaPredicted RBP21.27■■□□□ 1
CHMP4A-207ENST00000533523 ZBTB1Q9Y2K1 713 aa21.27■■□□□ 1
CHMP4A-207ENST00000533523 DICER1Q9UPY3 1922 aaKnown RBP21.27■■□□□ 1
CHMP4A-207ENST00000533523 KDM2BQ8NHM5 1336 aa21.27■□□□□ 0.99
CHMP4A-207ENST00000533523 TM4SF1P30408 202 aa21.26■□□□□ 0.99
CHMP4A-207ENST00000533523 CACNA1SQ13698 1873 aa21.26■□□□□ 0.99
CHMP4A-207ENST00000533523 MTHFSDQ2M296 383 aaKnown RBP21.25■□□□□ 0.99
CHMP4A-207ENST00000533523 CC2D1BQ5T0F9 858 aaKnown RBP21.25■□□□□ 0.99
CHMP4A-207ENST00000533523 CARMIL3Q8ND23 1372 aa21.24■□□□□ 0.99
CHMP4A-207ENST00000533523 DIAPH1O60610 1272 aaKnown RBP21.24■□□□□ 0.99
CHMP4A-207ENST00000533523 NFIXQ14938 502 aa21.24■□□□□ 0.99
CHMP4A-207ENST00000533523 SMC1BQ8NDV3 1235 aa21.24■□□□□ 0.99
CHMP4A-207ENST00000533523 NARFQ9UHQ1 456 aa21.24■□□□□ 0.99
CHMP4A-207ENST00000533523 FER1L6Q2WGJ9 1857 aa21.24■□□□□ 0.99
CHMP4A-207ENST00000533523 COL3A1P02461 1466 aaPredicted RBP21.23■□□□□ 0.99
CHMP4A-207ENST00000533523 TTC5Q8N0Z6 440 aa21.22■□□□□ 0.99
CHMP4A-207ENST00000533523 CANXP27824 592 aaKnown RBP21.21■□□□□ 0.99
CHMP4A-207ENST00000533523 CNGB1Q14028 1251 aaPredicted RBP21.21■□□□□ 0.99
CHMP4A-207ENST00000533523 NFKBIEO00221 500 aa21.2■□□□□ 0.98
CHMP4A-207ENST00000533523 VSIG10Q8N0Z9 540 aa21.2■□□□□ 0.98
CHMP4A-207ENST00000533523 BCORQ6W2J9 1755 aa21.19■□□□□ 0.98
CHMP4A-207ENST00000533523 SERPINB2P05120 415 aa21.19■□□□□ 0.98
CHMP4A-207ENST00000533523 BCL2L12Q9HB09 334 aa21.19■□□□□ 0.98
CHMP4A-207ENST00000533523 U2SURPO15042 1029 aaKnown RBP21.18■□□□□ 0.98
CHMP4A-207ENST00000533523 BICDL1Q6ZP65 573 aa21.18■□□□□ 0.98
CHMP4A-207ENST00000533523 GLTPD2A6NH11 291 aa21.17■□□□□ 0.98
CHMP4A-207ENST00000533523 STARD3NLO95772 234 aa21.17■□□□□ 0.98
CHMP4A-207ENST00000533523 C2CD5Q86YS7 1000 aa21.17■□□□□ 0.98
CHMP4A-207ENST00000533523 ZNF330Q9Y3S2 320 aaPredicted RBP21.17■□□□□ 0.98
CHMP4A-207ENST00000533523 ZC3H4Q9UPT8 1303 aaKnown RBP21.16■□□□□ 0.98
CHMP4A-207ENST00000533523 POTEIP0CG38 1075 aa21.16■□□□□ 0.98
CHMP4A-207ENST00000533523 POTEJP0CG39 1038 aa21.16■□□□□ 0.98
CHMP4A-207ENST00000533523 TEFQ10587 303 aa21.16■□□□□ 0.98
CHMP4A-207ENST00000533523 TTLL6Q8N841 843 aa21.16■□□□□ 0.98
CHMP4A-207ENST00000533523 LMNB1P20700 586 aa21.15■□□□□ 0.98
CHMP4A-207ENST00000533523 HEG1Q9ULI3 1381 aa21.14■□□□□ 0.98
CHMP4A-207ENST00000533523 A0A087WZG4 1122 aa21.14■□□□□ 0.97
CHMP4A-207ENST00000533523 PER1O15534 1290 aaPredicted RBP21.14■□□□□ 0.97
CHMP4A-207ENST00000533523 GAS2L2Q8NHY3 880 aa21.14■□□□□ 0.97
CHMP4A-207ENST00000533523 ARFGEF2Q9Y6D5 1785 aa21.14■□□□□ 0.97
CHMP4A-207ENST00000533523 GNAT3A8MTJ3 354 aa21.13■□□□□ 0.97
CHMP4A-207ENST00000533523 H0YIN7 160 aa21.13■□□□□ 0.97
CHMP4A-207ENST00000533523 VEGFAP15692 232 aaPredicted RBP21.13■□□□□ 0.97
CHMP4A-207ENST00000533523 EIF5P55010 431 aaKnown RBP21.13■□□□□ 0.97
CHMP4A-207ENST00000533523 ZNF496Q96IT1 587 aaPredicted RBP21.13■□□□□ 0.97
CHMP4A-207ENST00000533523 TBC1D9BQ66K14 1250 aa21.12■□□□□ 0.97
CHMP4A-207ENST00000533523 ZNF790Q6PG37 636 aa21.12■□□□□ 0.97
CHMP4A-207ENST00000533523 TNRC18O15417 2968 aaPredicted RBP21.12■□□□□ 0.97
CHMP4A-207ENST00000533523 NPC1L1Q9UHC9 1359 aa21.11■□□□□ 0.97
CHMP4A-207ENST00000533523 SLX4Q8IY92 1834 aa21.11■□□□□ 0.97
CHMP4A-207ENST00000533523 FOXN1O15353 648 aa21.11■□□□□ 0.97
CHMP4A-207ENST00000533523 ADAMTSL1Q8N6G6 1762 aa21.1■□□□□ 0.97
CHMP4A-207ENST00000533523 IL17REQ8NFR9 667 aa21.1■□□□□ 0.97
CHMP4A-207ENST00000533523 ZNF622Q969S3 477 aaKnown RBP eCLIP21.1■□□□□ 0.972e-7■■■□□ 18.4
CHMP4A-207ENST00000533523 TBC1D2BQ9UPU7 963 aa21.1■□□□□ 0.97
CHMP4A-207ENST00000533523 NPHP1O15259 732 aa21.09■□□□□ 0.97
CHMP4A-207ENST00000533523 NPM2Q86SE8 214 aaKnown RBP21.09■□□□□ 0.97
CHMP4A-207ENST00000533523 CCDC24Q8N4L8 307 aa21.09■□□□□ 0.97
CHMP4A-207ENST00000533523 FMNL2Q96PY5 1086 aa21.09■□□□□ 0.97
CHMP4A-207ENST00000533523 ZNF219Q9P2Y4 722 aaPredicted RBP21.09■□□□□ 0.97
CHMP4A-207ENST00000533523 MKRN1Q9UHC7 482 aaKnown RBP21.09■□□□□ 0.97
CHMP4A-207ENST00000533523 SLC34A2O95436 690 aa21.08■□□□□ 0.97
CHMP4A-207ENST00000533523 TEX13AQ9BXU3 409 aaPredicted RBP21.08■□□□□ 0.97
CHMP4A-207ENST00000533523 PRR5LQ6MZQ0 368 aa21.07■□□□□ 0.96
CHMP4A-207ENST00000533523 CEMIPQ8WUJ3 1361 aa21.07■□□□□ 0.96
CHMP4A-207ENST00000533523 PRKAR2BP31323 418 aa21.06■□□□□ 0.96
CHMP4A-207ENST00000533523 PDE6BP35913 854 aa21.06■□□□□ 0.96
CHMP4A-207ENST00000533523 IL6STP40189 918 aaPredicted RBP21.06■□□□□ 0.96
CHMP4A-207ENST00000533523 CNBD1Q8NA66 436 aa21.06■□□□□ 0.96
CHMP4A-207ENST00000533523 ZNF316A6NFI3 1004 aaPredicted RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms