RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 PRKAR2BP31323 418 aa23.86■■□□□ 1.41
PCF11-206ENST00000533018 ADCY9O60503 1353 aa23.86■■□□□ 1.41
PCF11-206ENST00000533018 COL15A1P39059 1388 aa23.86■■□□□ 1.41
PCF11-206ENST00000533018 STARD3NLO95772 234 aa23.85■■□□□ 1.41
PCF11-206ENST00000533018 UBR2Q8IWV8 1755 aa23.85■■□□□ 1.41
PCF11-206ENST00000533018 POLRMTO00411 1230 aaKnown RBP23.84■■□□□ 1.41
PCF11-206ENST00000533018 U2AF1L5P0DN76 240 aaPredicted RBP23.84■■□□□ 1.41
PCF11-206ENST00000533018 PPP2R1AP30153 589 aa23.84■■□□□ 1.41
PCF11-206ENST00000533018 TM4SF1P30408 202 aa23.84■■□□□ 1.41
PCF11-206ENST00000533018 U2AF1Q01081 240 aaKnown RBP eCLIP23.84■■□□□ 1.41
PCF11-206ENST00000533018 PHACTR3Q96KR7 559 aa23.84■■□□□ 1.41
PCF11-206ENST00000533018 PIM2Q9P1W9 311 aa23.84■■□□□ 1.41
PCF11-206ENST00000533018 NARFQ9UHQ1 456 aa23.84■■□□□ 1.41
PCF11-206ENST00000533018 ZNF790Q6PG37 636 aa23.83■■□□□ 1.41
PCF11-206ENST00000533018 BRCA1P38398 1863 aaKnown RBP23.83■■□□□ 1.4
PCF11-206ENST00000533018 KCNA3P22001 575 aa23.82■■□□□ 1.4
PCF11-206ENST00000533018 ZNF496Q96IT1 587 aaPredicted RBP23.82■■□□□ 1.4
PCF11-206ENST00000533018 RSPH6AQ9H0K4 717 aa23.82■■□□□ 1.4
PCF11-206ENST00000533018 ZNF330Q9Y3S2 320 aaPredicted RBP23.82■■□□□ 1.4
PCF11-206ENST00000533018 CHRNA5P30532 468 aa23.8■■□□□ 1.4
PCF11-206ENST00000533018 NFIXQ14938 502 aa23.8■■□□□ 1.4
PCF11-206ENST00000533018 DALRD3Q5D0E6 543 aaKnown RBP23.8■■□□□ 1.4
PCF11-206ENST00000533018 TEX13AQ9BXU3 409 aaPredicted RBP23.8■■□□□ 1.4
PCF11-206ENST00000533018 SIPA1L3O60292 1781 aaPredicted RBP23.8■■□□□ 1.4
PCF11-206ENST00000533018 BTBD11A6QL63 1104 aa23.79■■□□□ 1.4
PCF11-206ENST00000533018 NPM2Q86SE8 214 aaKnown RBP23.79■■□□□ 1.4
PCF11-206ENST00000533018 RTF1Q92541 710 aaKnown RBP23.79■■□□□ 1.4
PCF11-206ENST00000533018 FMNL2Q96PY5 1086 aa23.79■■□□□ 1.4
PCF11-206ENST00000533018 CEP350Q5VT06 3117 aa23.79■■□□□ 1.4
PCF11-206ENST00000533018 HEG1Q9ULI3 1381 aa23.78■■□□□ 1.4
PCF11-206ENST00000533018 AFDNP55196 1824 aaKnown RBP23.78■■□□□ 1.4
PCF11-206ENST00000533018 ARFGEF1Q9Y6D6 1849 aa23.78■■□□□ 1.4
PCF11-206ENST00000533018 A0A087WZG4 1122 aa23.78■■□□□ 1.4
PCF11-206ENST00000533018 BICDL1Q6ZP65 573 aa23.78■■□□□ 1.4
PCF11-206ENST00000533018 SERPINB2P05120 415 aa23.76■■□□□ 1.39
PCF11-206ENST00000533018 EIF5P55010 431 aaKnown RBP23.76■■□□□ 1.39
PCF11-206ENST00000533018 BCL2L12Q9HB09 334 aa23.76■■□□□ 1.39
PCF11-206ENST00000533018 CEMIPQ8WUJ3 1361 aa23.76■■□□□ 1.39
PCF11-206ENST00000533018 MCM10Q7L590 875 aa23.75■■□□□ 1.39
PCF11-206ENST00000533018 KCNQ3O43525 872 aa23.74■■□□□ 1.39
PCF11-206ENST00000533018 TBC1D2BQ9UPU7 963 aa23.74■■□□□ 1.39
PCF11-206ENST00000533018 C9orf131Q5VYM1 1079 aa23.73■■□□□ 1.39
PCF11-206ENST00000533018 A1BGP04217 495 aa23.72■■□□□ 1.39
PCF11-206ENST00000533018 NEFMP07197 916 aa23.71■■□□□ 1.39
PCF11-206ENST00000533018 IL6STP40189 918 aaPredicted RBP23.71■■□□□ 1.39
PCF11-206ENST00000533018 DCTN1Q14203 1278 aa23.7■■□□□ 1.38
PCF11-206ENST00000533018 TBC1D9BQ66K14 1250 aa23.7■■□□□ 1.38
PCF11-206ENST00000533018 NRXN2Q9P2S2 1712 aa23.7■■□□□ 1.38
PCF11-206ENST00000533018 KIF3CO14782 793 aa23.69■■□□□ 1.38
PCF11-206ENST00000533018 C2CD5Q86YS7 1000 aa23.69■■□□□ 1.38
PCF11-206ENST00000533018 H0YIN7 160 aa23.68■■□□□ 1.38
PCF11-206ENST00000533018 NPHP1O15259 732 aa23.68■■□□□ 1.38
PCF11-206ENST00000533018 RNF181Q9P0P0 153 aa23.68■■□□□ 1.38
PCF11-206ENST00000533018 USP16Q9Y5T5 823 aa23.68■■□□□ 1.38
PCF11-206ENST00000533018 PIP4K2AP48426 406 aaPredicted RBP23.67■■□□□ 1.38
PCF11-206ENST00000533018 HTATSF1O43719 755 aaKnown RBP23.66■■□□□ 1.38
PCF11-206ENST00000533018 TTLL6Q8N841 843 aa23.66■■□□□ 1.38
PCF11-206ENST00000533018 SCN7AQ01118 1682 aa23.66■■□□□ 1.38
PCF11-206ENST00000533018 CARMIL3Q8ND23 1372 aa23.65■■□□□ 1.38
PCF11-206ENST00000533018 SBF1O95248 1867 aa23.65■■□□□ 1.38
PCF11-206ENST00000533018 PRAMEF22A3QJZ6 481 aa23.65■■□□□ 1.38
PCF11-206ENST00000533018 SNRPA1P09661 255 aaKnown RBP23.65■■□□□ 1.38
PCF11-206ENST00000533018 HSPA6P17066 643 aa23.65■■□□□ 1.38
PCF11-206ENST00000533018 DZIP3Q86Y13 1208 aaKnown RBP23.65■■□□□ 1.38
PCF11-206ENST00000533018 CCDC24Q8N4L8 307 aa23.65■■□□□ 1.38
PCF11-206ENST00000533018 SETDB2Q96T68 719 aa23.65■■□□□ 1.38
PCF11-206ENST00000533018 ZNF622Q969S3 477 aaKnown RBP eCLIP23.64■■□□□ 1.371e-23■□□□□ 10.7
PCF11-206ENST00000533018 NMRK2Q9NPI5 230 aa23.64■■□□□ 1.37
PCF11-206ENST00000533018 DLEC1Q9Y238 1755 aa23.64■■□□□ 1.37
PCF11-206ENST00000533018 CAMTA2O94983 1202 aa23.63■■□□□ 1.37
PCF11-206ENST00000533018 TAF7Q15545 349 aaPredicted RBP23.63■■□□□ 1.37
PCF11-206ENST00000533018 PDE6BP35913 854 aa23.62■■□□□ 1.37
PCF11-206ENST00000533018 RASSF7Q02833 373 aa23.62■■□□□ 1.37
PCF11-206ENST00000533018 PRR5LQ6MZQ0 368 aa23.62■■□□□ 1.37
PCF11-206ENST00000533018 C16orf71Q8IYS4 520 aaPredicted RBP23.62■■□□□ 1.37
PCF11-206ENST00000533018 BRIP1Q9BX63 1249 aa23.62■■□□□ 1.37
PCF11-206ENST00000533018 MIS18AQ9NYP9 233 aa23.62■■□□□ 1.37
PCF11-206ENST00000533018 DLG5Q8TDM6 1919 aa23.62■■□□□ 1.37
PCF11-206ENST00000533018 TOMM70O94826 608 aa23.61■■□□□ 1.37
PCF11-206ENST00000533018 KDM2BQ8NHM5 1336 aa23.6■■□□□ 1.37
PCF11-206ENST00000533018 CNBD1Q8NA66 436 aa23.6■■□□□ 1.37
PCF11-206ENST00000533018 ANKRD31Q8N7Z5 1873 aa23.6■■□□□ 1.37
PCF11-206ENST00000533018 ST5P78524 1137 aa23.59■■□□□ 1.37
PCF11-206ENST00000533018 ZNF219Q9P2Y4 722 aaPredicted RBP23.59■■□□□ 1.37
PCF11-206ENST00000533018 PDZRN3Q9UPQ7 1066 aa23.59■■□□□ 1.37
PCF11-206ENST00000533018 MAPK8IP3Q9UPT6 1336 aa23.59■■□□□ 1.37
PCF11-206ENST00000533018 CCDC88AQ3V6T2 1871 aa23.58■■□□□ 1.37
PCF11-206ENST00000533018 BCORQ6W2J9 1755 aa23.58■■□□□ 1.37
PCF11-206ENST00000533018 PNNQ9H307 717 aaKnown RBP23.58■■□□□ 1.37
PCF11-206ENST00000533018 ZNF652Q9Y2D9 606 aa23.58■■□□□ 1.37
PCF11-206ENST00000533018 LMNB1P20700 586 aa23.57■■□□□ 1.36
PCF11-206ENST00000533018 PNISRQ8TF01 805 aaKnown RBP23.56■■□□□ 1.36
PCF11-206ENST00000533018 PLEKHF1Q96S99 279 aa23.56■■□□□ 1.36
PCF11-206ENST00000533018 RRAGCQ9HB90 399 aa23.56■■□□□ 1.36
PCF11-206ENST00000533018 C21orf2O43822 256 aa23.55■■□□□ 1.36
PCF11-206ENST00000533018 NFE2L2Q16236 605 aa23.55■■□□□ 1.36
PCF11-206ENST00000533018 CLEC4GQ6UXB4 293 aa23.55■■□□□ 1.36
PCF11-206ENST00000533018 NBPF5PQ86XG9 351 aaPredicted RBP23.55■■□□□ 1.36
PCF11-206ENST00000533018 CACNA1SQ13698 1873 aa23.54■■□□□ 1.36
PCF11-206ENST00000533018 NBPF26B4DH59 902 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms