RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 C9orf131Q5VYM1 1079 aa12.66□□□□□ -0.38
CHMP4A-205ENST00000531158 INTS5Q6P9B9 1019 aaKnown RBP12.66□□□□□ -0.38
CHMP4A-205ENST00000531158 TIMELESSQ9UNS1 1208 aa12.66□□□□□ -0.38
CHMP4A-205ENST00000531158 DICER1Q9UPY3 1922 aaKnown RBP12.66□□□□□ -0.38
CHMP4A-205ENST00000531158 SCN7AQ01118 1682 aa12.65□□□□□ -0.38
CHMP4A-205ENST00000531158 CHRNA5P30532 468 aa12.65□□□□□ -0.38
CHMP4A-205ENST00000531158 MTHFSP49914 203 aa12.65□□□□□ -0.38
CHMP4A-205ENST00000531158 AMOTQ4VCS5 1084 aa12.65□□□□□ -0.38
CHMP4A-205ENST00000531158 PARP3Q9Y6F1 533 aa12.65□□□□□ -0.38
CHMP4A-205ENST00000531158 FER1L6Q2WGJ9 1857 aa12.64□□□□□ -0.39
CHMP4A-205ENST00000531158 POLRMTO00411 1230 aaKnown RBP12.64□□□□□ -0.39
CHMP4A-205ENST00000531158 HSPA5P11021 654 aaKnown RBP12.64□□□□□ -0.39
CHMP4A-205ENST00000531158 IL13P35225 146 aa12.64□□□□□ -0.39
CHMP4A-205ENST00000531158 MLLT1Q03111 559 aaPredicted RBP12.64□□□□□ -0.39
CHMP4A-205ENST00000531158 SULT6B1Q6IMI4 303 aa12.64□□□□□ -0.39
CHMP4A-205ENST00000531158 FOXN1O15353 648 aa12.63□□□□□ -0.39
CHMP4A-205ENST00000531158 TM4SF1P30408 202 aa12.63□□□□□ -0.39
CHMP4A-205ENST00000531158 PRDM10Q9NQV6 1147 aa12.63□□□□□ -0.39
CHMP4A-205ENST00000531158 CARMIL3Q8ND23 1372 aa12.62□□□□□ -0.39
CHMP4A-205ENST00000531158 DNAJC10Q8IXB1 793 aa12.62□□□□□ -0.39
CHMP4A-205ENST00000531158 LGR6Q9HBX8 967 aa12.62□□□□□ -0.39
CHMP4A-205ENST00000531158 PIM2Q9P1W9 311 aa12.62□□□□□ -0.39
CHMP4A-205ENST00000531158 SOS1Q07889 1333 aaPredicted RBP12.62□□□□□ -0.39
CHMP4A-205ENST00000531158 BCORQ6W2J9 1755 aa12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 ARFGEF2Q9Y6D5 1785 aa12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 DALRD3Q5D0E6 543 aaKnown RBP12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 C1orf141Q5JVX7 400 aa12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 USPL1Q5W0Q7 1092 aa12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 ABHD8Q96I13 439 aa12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 BCL2L12Q9HB09 334 aa12.61□□□□□ -0.39
CHMP4A-205ENST00000531158 CYP19A1P11511 503 aaPredicted RBP12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 EIF4G2P78344 907 aaKnown RBP eCLIP12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 SLC39A6Q13433 755 aa12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 MORC1Q86VD1 984 aa12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 SLC52A2Q9HAB3 445 aa12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 RNF181Q9P0P0 153 aa12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 CLSPNQ9HAW4 1339 aa12.6□□□□□ -0.39
CHMP4A-205ENST00000531158 COL3A1P02461 1466 aaPredicted RBP12.59□□□□□ -0.39
CHMP4A-205ENST00000531158 COL15A1P39059 1388 aa12.59□□□□□ -0.39
CHMP4A-205ENST00000531158 RASSF7Q02833 373 aa12.59□□□□□ -0.39
CHMP4A-205ENST00000531158 NFIXQ14938 502 aa12.59□□□□□ -0.39
CHMP4A-205ENST00000531158 AMER1Q5JTC6 1135 aaPredicted RBP12.59□□□□□ -0.39
CHMP4A-205ENST00000531158 MKRN1Q9UHC7 482 aaKnown RBP12.59□□□□□ -0.39
CHMP4A-205ENST00000531158 SLX4Q8IY92 1834 aa12.58□□□□□ -0.4
CHMP4A-205ENST00000531158 CTCFP49711 727 aaPredicted RBP12.58□□□□□ -0.4
CHMP4A-205ENST00000531158 AKAP4Q5JQC9 854 aa12.58□□□□□ -0.4
CHMP4A-205ENST00000531158 AIDAQ96BJ3 306 aa12.58□□□□□ -0.4
CHMP4A-205ENST00000531158 ZBTB1Q9Y2K1 713 aa12.58□□□□□ -0.4
CHMP4A-205ENST00000531158 RNMTO43148 476 aaKnown RBP12.57□□□□□ -0.4
CHMP4A-205ENST00000531158 CCDC85CA6NKD9 419 aa12.56□□□□□ -0.4
CHMP4A-205ENST00000531158 HMOX1P09601 288 aa12.56□□□□□ -0.4
CHMP4A-205ENST00000531158 MTHFSDQ2M296 383 aaKnown RBP12.56□□□□□ -0.4
CHMP4A-205ENST00000531158 NARFQ9UHQ1 456 aa12.56□□□□□ -0.4
CHMP4A-205ENST00000531158 LBX1P52954 281 aa12.55□□□□□ -0.4
CHMP4A-205ENST00000531158 NFKBIEO00221 500 aa12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 ZPR1O75312 459 aa12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 SERPINB2P05120 415 aa12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 VEGFAP15692 232 aaPredicted RBP12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 RGS19P49795 217 aa12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 KIF7Q2M1P5 1343 aa12.54□□□□□ -0.4
CHMP4A-205ENST00000531158 POTECB2RU33 542 aa12.52□□□□□ -0.41
CHMP4A-205ENST00000531158 PER1O15534 1290 aaPredicted RBP12.52□□□□□ -0.41
CHMP4A-205ENST00000531158 EIF5P55010 431 aaKnown RBP12.52□□□□□ -0.41
CHMP4A-205ENST00000531158 CREBZFQ9NS37 354 aa12.52□□□□□ -0.41
CHMP4A-205ENST00000531158 ZC3H4Q9UPT8 1303 aaKnown RBP12.52□□□□□ -0.41
CHMP4A-205ENST00000531158 LMNB1P20700 586 aa12.51□□□□□ -0.41
CHMP4A-205ENST00000531158 CANXP27824 592 aaKnown RBP12.51□□□□□ -0.41
CHMP4A-205ENST00000531158 VSIG10Q8N0Z9 540 aa12.51□□□□□ -0.41
CHMP4A-205ENST00000531158 GLTPD2A6NH11 291 aa12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 TBC1D9BQ66K14 1250 aa12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 C2CD5Q86YS7 1000 aa12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 CCDC24Q8N4L8 307 aa12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 TTLL6Q8N841 843 aa12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 ZNF496Q96IT1 587 aaPredicted RBP12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 DLG5Q8TDM6 1919 aa12.5□□□□□ -0.41
CHMP4A-205ENST00000531158 SCN4AP35499 1836 aa12.49□□□□□ -0.41
CHMP4A-205ENST00000531158 HEG1Q9ULI3 1381 aa12.49□□□□□ -0.41
CHMP4A-205ENST00000531158 PRR5LQ6MZQ0 368 aa12.49□□□□□ -0.41
CHMP4A-205ENST00000531158 BICDL1Q6ZP65 573 aa12.49□□□□□ -0.41
CHMP4A-205ENST00000531158 IL17REQ8NFR9 667 aa12.49□□□□□ -0.41
CHMP4A-205ENST00000531158 LAMB4A4D0S4 1761 aa12.48□□□□□ -0.41
CHMP4A-205ENST00000531158 ADAMTSL1Q8N6G6 1762 aa12.48□□□□□ -0.41
CHMP4A-205ENST00000531158 DIAPH1O60610 1272 aaKnown RBP12.48□□□□□ -0.41
CHMP4A-205ENST00000531158 CFAP44Q96MT7 982 aa12.48□□□□□ -0.41
CHMP4A-205ENST00000531158 CNTNAP1P78357 1384 aa12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 CEMIPQ8WUJ3 1361 aa12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 H0YIN7 160 aa12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 CC2D1BQ5T0F9 858 aaKnown RBP12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 ZNF790Q6PG37 636 aa12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 WBP1LQ9NX94 342 aa12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 TBC1D2BQ9UPU7 963 aa12.47□□□□□ -0.41
CHMP4A-205ENST00000531158 NUP98P52948 1817 aa12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 KCNQ3O43525 872 aa12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 C21orf2O43822 256 aa12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 POTEIP0CG38 1075 aa12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 POTEJP0CG39 1038 aa12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 HSPA8P11142 646 aaKnown RBP12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 VEGFBP49765 207 aa12.46□□□□□ -0.41
CHMP4A-205ENST00000531158 CAMTA2O94983 1202 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms