RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 PXDNLA1KZ92 1463 aa17.68■□□□□ 0.42
VPS28-211ENST00000530790 HTATSF1O43719 755 aaKnown RBP17.67■□□□□ 0.42
VPS28-211ENST00000530790 FKBP8Q14318 412 aa17.67■□□□□ 0.42
VPS28-211ENST00000530790 TEX13AQ9BXU3 409 aaPredicted RBP17.67■□□□□ 0.42
VPS28-211ENST00000530790 KIF13BQ9NQT8 1826 aa17.67■□□□□ 0.42
VPS28-211ENST00000530790 MAPK8IP3Q9UPT6 1336 aa17.67■□□□□ 0.42
VPS28-211ENST00000530790 USPL1Q5W0Q7 1092 aa17.66■□□□□ 0.42
VPS28-211ENST00000530790 PNNQ9H307 717 aaKnown RBP17.66■□□□□ 0.42
VPS28-211ENST00000530790 CANXP27824 592 aaKnown RBP17.65■□□□□ 0.42
VPS28-211ENST00000530790 WWC3Q9ULE0 1092 aa17.65■□□□□ 0.42
VPS28-211ENST00000530790 MYBBP1AQ9BQG0 1328 aaKnown RBP17.65■□□□□ 0.42
VPS28-211ENST00000530790 KIAA1551Q9HCM1 1747 aa17.64■□□□□ 0.41
VPS28-211ENST00000530790 DCTN1Q14203 1278 aa17.64■□□□□ 0.41
VPS28-211ENST00000530790 NARFQ9UHQ1 456 aa17.64■□□□□ 0.41
VPS28-211ENST00000530790 KCNQ3O43525 872 aa17.63■□□□□ 0.41
VPS28-211ENST00000530790 TGFB2P61812 414 aa17.63■□□□□ 0.41
VPS28-211ENST00000530790 DDR1Q08345 913 aa17.63■□□□□ 0.41
VPS28-211ENST00000530790 ZNF784Q8NCA9 323 aaPredicted RBP17.63■□□□□ 0.41
VPS28-211ENST00000530790 PLEKHF1Q96S99 279 aa17.63■□□□□ 0.41
VPS28-211ENST00000530790 SCN7AQ01118 1682 aa17.62■□□□□ 0.41
VPS28-211ENST00000530790 A0A087WZG4 1122 aa17.62■□□□□ 0.41
VPS28-211ENST00000530790 NFE2L2Q16236 605 aa17.62■□□□□ 0.41
VPS28-211ENST00000530790 ZNF330Q9Y3S2 320 aaPredicted RBP17.62■□□□□ 0.41
VPS28-211ENST00000530790 POLRMTO00411 1230 aaKnown RBP17.61■□□□□ 0.41
VPS28-211ENST00000530790 ZEB1P37275 1124 aaPredicted RBP17.61■□□□□ 0.41
VPS28-211ENST00000530790 EIF5P55010 431 aaKnown RBP17.61■□□□□ 0.41
VPS28-211ENST00000530790 NPM2Q86SE8 214 aaKnown RBP17.61■□□□□ 0.41
VPS28-211ENST00000530790 IL6STP40189 918 aaPredicted RBP17.6■□□□□ 0.41
VPS28-211ENST00000530790 N4BP2Q86UW6 1770 aaPredicted RBP17.6■□□□□ 0.41
VPS28-211ENST00000530790 DLG5Q8TDM6 1919 aa17.6■□□□□ 0.41
VPS28-211ENST00000530790 A0A0G2JLW4 131 aa17.59■□□□□ 0.41
VPS28-211ENST00000530790 SNRPA1P09661 255 aaKnown RBP17.59■□□□□ 0.41
VPS28-211ENST00000530790 TM4SF1P30408 202 aa17.59■□□□□ 0.41
VPS28-211ENST00000530790 NFIXQ14938 502 aa17.59■□□□□ 0.41
VPS28-211ENST00000530790 TAF7Q15545 349 aaPredicted RBP17.59■□□□□ 0.41
VPS28-211ENST00000530790 DPEP1P16444 411 aa17.58■□□□□ 0.4
VPS28-211ENST00000530790 PNISRQ8TF01 805 aaKnown RBP17.58■□□□□ 0.4
VPS28-211ENST00000530790 A1BGP04217 495 aa17.57■□□□□ 0.4
VPS28-211ENST00000530790 BCL2L12Q9HB09 334 aa17.57■□□□□ 0.4
VPS28-211ENST00000530790 BCS1LQ9Y276 419 aa17.57■□□□□ 0.4
VPS28-211ENST00000530790 KDM3BQ7LBC6 1761 aa17.57■□□□□ 0.4
VPS28-211ENST00000530790 LAMB4A4D0S4 1761 aa17.56■□□□□ 0.4
VPS28-211ENST00000530790 NRXN2Q9P2S2 1712 aa17.56■□□□□ 0.4
VPS28-211ENST00000530790 PRAMEF22A3QJZ6 481 aa17.56■□□□□ 0.4
VPS28-211ENST00000530790 WDR43Q15061 677 aaKnown RBP eCLIP17.56■□□□□ 0.4
VPS28-211ENST00000530790 THUMPD2Q9BTF0 503 aaKnown RBP17.56■□□□□ 0.4
VPS28-211ENST00000530790 TBC1D2BQ9UPU7 963 aa17.56■□□□□ 0.4
VPS28-211ENST00000530790 USP16Q9Y5T5 823 aa17.56■□□□□ 0.4
VPS28-211ENST00000530790 BICDL1Q6ZP65 573 aa17.55■□□□□ 0.4
VPS28-211ENST00000530790 PRKRIP1Q9H875 184 aaPredicted RBP17.55■□□□□ 0.4
VPS28-211ENST00000530790 MIS18AQ9NYP9 233 aa17.55■□□□□ 0.4
VPS28-211ENST00000530790 BCORQ6W2J9 1755 aa17.55■□□□□ 0.4
VPS28-211ENST00000530790 BRCA1P38398 1863 aaKnown RBP17.54■□□□□ 0.4
VPS28-211ENST00000530790 SERPINB2P05120 415 aa17.54■□□□□ 0.4
VPS28-211ENST00000530790 PIP4K2AP48426 406 aaPredicted RBP17.54■□□□□ 0.4
VPS28-211ENST00000530790 LMOD3Q0VAK6 560 aa17.54■□□□□ 0.4
VPS28-211ENST00000530790 DZIP3Q86Y13 1208 aaKnown RBP17.54■□□□□ 0.4
VPS28-211ENST00000530790 AFDNP55196 1824 aaKnown RBP17.54■□□□□ 0.4
VPS28-211ENST00000530790 CARMIL3Q8ND23 1372 aa17.53■□□□□ 0.4
VPS28-211ENST00000530790 RIPK4P57078 832 aa17.53■□□□□ 0.4
VPS28-211ENST00000530790 TBC1D9BQ66K14 1250 aa17.53■□□□□ 0.4
VPS28-211ENST00000530790 PIM2Q9P1W9 311 aa17.53■□□□□ 0.4
VPS28-211ENST00000530790 ATP10DQ9P241 1426 aa17.53■□□□□ 0.4
VPS28-211ENST00000530790 ADCY9O60503 1353 aa17.53■□□□□ 0.4
VPS28-211ENST00000530790 CAMTA2O94983 1202 aa17.52■□□□□ 0.4
VPS28-211ENST00000530790 KCNA3P22001 575 aa17.52■□□□□ 0.4
VPS28-211ENST00000530790 CHRNA5P30532 468 aa17.52■□□□□ 0.4
VPS28-211ENST00000530790 CCDC146Q8IYE0 955 aa17.52■□□□□ 0.4
VPS28-211ENST00000530790 TMPOP42166 694 aaKnown RBP17.51■□□□□ 0.39
VPS28-211ENST00000530790 DALRD3Q5D0E6 543 aaKnown RBP17.51■□□□□ 0.39
VPS28-211ENST00000530790 EIF4A1P60842 406 aaKnown RBP17.5■□□□□ 0.39
VPS28-211ENST00000530790 TSPYL4Q9UJ04 414 aa17.5■□□□□ 0.39
VPS28-211ENST00000530790 ZNF652Q9Y2D9 606 aa17.5■□□□□ 0.39
VPS28-211ENST00000530790 ARFGEF1Q9Y6D6 1849 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 NBPF26B4DH59 902 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 NPHP1O15259 732 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 GIGYF1O75420 1035 aaPredicted RBP17.49■□□□□ 0.39
VPS28-211ENST00000530790 NBPF10Q6P3W6 841 aaKnown RBP17.49■□□□□ 0.39
VPS28-211ENST00000530790 ARHGAP27Q6ZUM4 889 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 NBPF15Q8N660 670 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 RUNDC1Q96C34 613 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 SETDB2Q96T68 719 aa17.49■□□□□ 0.39
VPS28-211ENST00000530790 RRP7AQ9Y3A4 280 aaKnown RBP17.49■□□□□ 0.39
VPS28-211ENST00000530790 DLEC1Q9Y238 1755 aa17.48■□□□□ 0.39
VPS28-211ENST00000530790 NEUROD2Q15784 382 aa17.47■□□□□ 0.39
VPS28-211ENST00000530790 CLEC4GQ6UXB4 293 aa17.47■□□□□ 0.39
VPS28-211ENST00000530790 CNBD1Q8NA66 436 aa17.47■□□□□ 0.39
VPS28-211ENST00000530790 ADAMTS8Q9UP79 889 aa17.47■□□□□ 0.39
VPS28-211ENST00000530790 H0YIN7 160 aa17.46■□□□□ 0.39
VPS28-211ENST00000530790 RGL2O15211 777 aa17.46■□□□□ 0.39
VPS28-211ENST00000530790 PRR5LQ6MZQ0 368 aa17.46■□□□□ 0.39
VPS28-211ENST00000530790 C2CD5Q86YS7 1000 aa17.46■□□□□ 0.39
VPS28-211ENST00000530790 BABAM1Q9NWV8 329 aa17.46■□□□□ 0.39
VPS28-211ENST00000530790 PDE6BP35913 854 aa17.45■□□□□ 0.38
VPS28-211ENST00000530790 ST5P78524 1137 aa17.45■□□□□ 0.38
VPS28-211ENST00000530790 BRIP1Q9BX63 1249 aa17.45■□□□□ 0.38
VPS28-211ENST00000530790 GPBP1L1Q9HC44 474 aaPredicted RBP17.45■□□□□ 0.38
VPS28-211ENST00000530790 NBPF5PQ86XG9 351 aaPredicted RBP17.44■□□□□ 0.38
VPS28-211ENST00000530790 ZNF526Q8TF50 670 aaPredicted RBP17.44■□□□□ 0.38
VPS28-211ENST00000530790 PDZRN3Q9UPQ7 1066 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms