RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 ZSCAN30Q86W11 494 aa23.64■■□□□ 1.37
PCF11-203ENST00000530304 MAP4K4O95819 1239 aaPredicted RBP23.63■■□□□ 1.37
PCF11-203ENST00000530304 RHPN1Q8TCX5 695 aa23.63■■□□□ 1.37
PCF11-203ENST00000530304 USP54Q70EL1 1684 aa23.63■■□□□ 1.37
PCF11-203ENST00000530304 EPB41L2O43491 1005 aaKnown RBP23.63■■□□□ 1.37
PCF11-203ENST00000530304 HSPA4P34932 840 aa23.63■■□□□ 1.37
PCF11-203ENST00000530304 CEMIPQ8WUJ3 1361 aa23.62■■□□□ 1.37
PCF11-203ENST00000530304 SRGAP3O43295 1099 aa23.62■■□□□ 1.37
PCF11-203ENST00000530304 LRSAM1Q6UWE0 723 aa23.62■■□□□ 1.37
PCF11-203ENST00000530304 PI4K2BQ8TCG2 481 aa23.62■■□□□ 1.37
PCF11-203ENST00000530304 SYCE3A1L190 88 aa23.62■■□□□ 1.37
PCF11-203ENST00000530304 NBPF7P0C2Y1 421 aaPredicted RBP23.62■■□□□ 1.37
PCF11-203ENST00000530304 MBD3O95983 291 aa23.61■■□□□ 1.37
PCF11-203ENST00000530304 EIF4A1P60842 406 aaKnown RBP23.61■■□□□ 1.37
PCF11-203ENST00000530304 LGR6Q9HBX8 967 aa23.61■■□□□ 1.37
PCF11-203ENST00000530304 KIF1BPQ96EK5 621 aa23.6■■□□□ 1.37
PCF11-203ENST00000530304 CHPF2Q9P2E5 772 aa23.6■■□□□ 1.37
PCF11-203ENST00000530304 BEND3Q5T5X7 828 aa23.59■■□□□ 1.37
PCF11-203ENST00000530304 NBPF6Q5VWK0 638 aa23.59■■□□□ 1.37
PCF11-203ENST00000530304 IP6K1Q92551 441 aa23.59■■□□□ 1.37
PCF11-203ENST00000530304 PDLIM2Q96JY6 352 aa23.59■■□□□ 1.37
PCF11-203ENST00000530304 NBPF4Q96M43 638 aa23.59■■□□□ 1.37
PCF11-203ENST00000530304 PI4KAP2A4QPH2 592 aa23.58■■□□□ 1.37
PCF11-203ENST00000530304 PI4KAP1Q8N8J0 262 aa23.58■■□□□ 1.37
PCF11-203ENST00000530304 MSNP26038 577 aaKnown RBP23.58■■□□□ 1.36
PCF11-203ENST00000530304 DNAAF4Q8WXU2 420 aa23.58■■□□□ 1.36
PCF11-203ENST00000530304 SGSM2O43147 1006 aa23.57■■□□□ 1.36
PCF11-203ENST00000530304 LTN1O94822 1766 aa23.57■■□□□ 1.36
PCF11-203ENST00000530304 HS1BP3Q53T59 392 aa23.57■■□□□ 1.36
PCF11-203ENST00000530304 KCNQ3O43525 872 aa23.56■■□□□ 1.36
PCF11-203ENST00000530304 HOXB7P09629 217 aa23.56■■□□□ 1.36
PCF11-203ENST00000530304 RAD50Q92878 1312 aa23.56■■□□□ 1.36
PCF11-203ENST00000530304 UBE2Q2Q8WVN8 375 aa23.56■■□□□ 1.36
PCF11-203ENST00000530304 PHF8Q9UPP1 1060 aa23.56■■□□□ 1.36
PCF11-203ENST00000530304 CNTROBQ8N137 903 aa23.55■■□□□ 1.36
PCF11-203ENST00000530304 MED1Q15648 1581 aaPredicted RBP23.54■■□□□ 1.36
PCF11-203ENST00000530304 PLEKHG5O94827 1062 aa23.54■■□□□ 1.36
PCF11-203ENST00000530304 FOXD4L6Q3SYB3 417 aaPredicted RBP23.54■■□□□ 1.36
PCF11-203ENST00000530304 FOXD4L3Q6VB84 417 aaPredicted RBP23.54■■□□□ 1.36
PCF11-203ENST00000530304 ANXA1P04083 346 aa23.54■■□□□ 1.36
PCF11-203ENST00000530304 LSG1Q9H089 658 aaKnown RBP23.54■■□□□ 1.36
PCF11-203ENST00000530304 SNX14Q9Y5W7 946 aa23.54■■□□□ 1.36
PCF11-203ENST00000530304 SETD1BQ9UPS6 1966 aaKnown RBP23.54■■□□□ 1.36
PCF11-203ENST00000530304 CHMP4AQ9BY43 222 aa23.53■■□□□ 1.36
PCF11-203ENST00000530304 WDR33Q9C0J8 1336 aaKnown RBP23.53■■□□□ 1.36
PCF11-203ENST00000530304 BTBD11A6QL63 1104 aa23.52■■□□□ 1.36
PCF11-203ENST00000530304 HSP90AB4PQ58FF6 505 aa23.52■■□□□ 1.36
PCF11-203ENST00000530304 KDM3BQ7LBC6 1761 aa23.52■■□□□ 1.36
PCF11-203ENST00000530304 NOL7Q9UMY1 257 aaKnown RBP23.52■■□□□ 1.36
PCF11-203ENST00000530304 ADCY9O60503 1353 aa23.51■■□□□ 1.35
PCF11-203ENST00000530304 TEFQ10587 303 aa23.51■■□□□ 1.35
PCF11-203ENST00000530304 CWC27Q6UX04 472 aaKnown RBP23.51■■□□□ 1.35
PCF11-203ENST00000530304 GDPD2Q9HCC8 539 aa23.51■■□□□ 1.35
PCF11-203ENST00000530304 ZBTB7CA1YPR0 619 aa23.51■■□□□ 1.35
PCF11-203ENST00000530304 RASEFQ8IZ41 740 aa23.51■■□□□ 1.35
PCF11-203ENST00000530304 TTC14Q96N46 770 aa23.51■■□□□ 1.35
PCF11-203ENST00000530304 FER1L4A9Z1Z3 1794 aa23.5■■□□□ 1.35
PCF11-203ENST00000530304 GADD45BO75293 160 aaPredicted RBP23.5■■□□□ 1.35
PCF11-203ENST00000530304 AKAP4Q5JQC9 854 aa23.5■■□□□ 1.35
PCF11-203ENST00000530304 KIAA1211Q6ZU35 1233 aa23.5■■□□□ 1.35
PCF11-203ENST00000530304 USP48Q86UV5 1035 aa23.5■■□□□ 1.35
PCF11-203ENST00000530304 NFAT5O94916 1531 aa23.5■■□□□ 1.35
PCF11-203ENST00000530304 USP42Q9H9J4 1324 aaKnown RBP23.5■■□□□ 1.35
PCF11-203ENST00000530304 OS9Q13438 667 aaPredicted RBP23.49■■□□□ 1.35
PCF11-203ENST00000530304 MPRIPQ6WCQ1 1025 aa23.49■■□□□ 1.35
PCF11-203ENST00000530304 SYAP1Q96A49 352 aaPredicted RBP23.49■■□□□ 1.35
PCF11-203ENST00000530304 TTC41PQ6P2S7 1318 aa23.49■■□□□ 1.35
PCF11-203ENST00000530304 AK2P54819 239 aa23.49■■□□□ 1.35
PCF11-203ENST00000530304 ZNF530Q6P9A1 599 aaPredicted RBP23.49■■□□□ 1.35
PCF11-203ENST00000530304 RNF214Q8ND24 703 aa23.49■■□□□ 1.35
PCF11-203ENST00000530304 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.49■■□□□ 1.35
PCF11-203ENST00000530304 SPG7Q9UQ90 795 aa23.49■■□□□ 1.35
PCF11-203ENST00000530304 OFD1O75665 1012 aa23.48■■□□□ 1.35
PCF11-203ENST00000530304 GLRX3O76003 335 aaKnown RBP23.48■■□□□ 1.35
PCF11-203ENST00000530304 LRRC59Q96AG4 307 aaKnown RBP23.48■■□□□ 1.35
PCF11-203ENST00000530304 RPAP1Q9BWH6 1393 aaPredicted RBP23.48■■□□□ 1.35
PCF11-203ENST00000530304 RBM33Q96EV2 1170 aaKnown RBP23.48■■□□□ 1.35
PCF11-203ENST00000530304 DBF4Q9UBU7 674 aaPredicted RBP23.47■■□□□ 1.35
PCF11-203ENST00000530304 MTX1Q13505 466 aa23.47■■□□□ 1.35
PCF11-203ENST00000530304 LARP6Q9BRS8 491 aaKnown RBP23.47■■□□□ 1.35
PCF11-203ENST00000530304 TSPY26PQ9H489 355 aa23.47■■□□□ 1.35
PCF11-203ENST00000530304 PSME1Q06323 249 aa23.46■■□□□ 1.35
PCF11-203ENST00000530304 PLEKHO1Q53GL0 409 aaPredicted RBP23.46■■□□□ 1.35
PCF11-203ENST00000530304 RUFY3Q7L099 469 aa23.46■■□□□ 1.35
PCF11-203ENST00000530304 CLASRPQ8N2M8 674 aaKnown RBP23.46■■□□□ 1.35
PCF11-203ENST00000530304 LIMCH1Q9UPQ0 1083 aa23.46■■□□□ 1.35
PCF11-203ENST00000530304 KCNH5Q8NCM2 988 aa23.46■■□□□ 1.35
PCF11-203ENST00000530304 RGPD2P0DJD1 1756 aa23.46■■□□□ 1.35
PCF11-203ENST00000530304 MAP3K2Q9Y2U5 619 aa23.46■■□□□ 1.35
PCF11-203ENST00000530304 LMO7Q8WWI1 1683 aa23.45■■□□□ 1.34
PCF11-203ENST00000530304 TPM2P07951 284 aa23.45■■□□□ 1.34
PCF11-203ENST00000530304 C9orf78Q9NZ63 289 aaPredicted RBP23.45■■□□□ 1.34
PCF11-203ENST00000530304 CRYBG1Q9Y4K1 1723 aa23.45■■□□□ 1.34
PCF11-203ENST00000530304 TCHHQ07283 1943 aa23.45■■□□□ 1.34
PCF11-203ENST00000530304 DIAPH3Q9NSV4 1193 aa23.45■■□□□ 1.34
PCF11-203ENST00000530304 ZNF500O60304 480 aaPredicted RBP23.44■■□□□ 1.34
PCF11-203ENST00000530304 ESCO1Q5FWF5 840 aa23.44■■□□□ 1.34
PCF11-203ENST00000530304 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.44■■□□□ 1.34
PCF11-203ENST00000530304 RNMTO43148 476 aaKnown RBP23.44■■□□□ 1.34
PCF11-203ENST00000530304 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms