RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 TTC5Q8N0Z6 440 aa19.3■□□□□ 0.68
HIF3A-213ENST00000529542 TEX13AQ9BXU3 409 aaPredicted RBP19.3■□□□□ 0.68
HIF3A-213ENST00000529542 GAS2L2Q8NHY3 880 aa19.29■□□□□ 0.68
HIF3A-213ENST00000529542 COL15A1P39059 1388 aa19.29■□□□□ 0.68
HIF3A-213ENST00000529542 CEP350Q5VT06 3117 aa19.29■□□□□ 0.68
HIF3A-213ENST00000529542 KDM2BQ8NHM5 1336 aa19.28■□□□□ 0.68
HIF3A-213ENST00000529542 ADAMTS7Q9UKP4 1686 aa19.28■□□□□ 0.68
HIF3A-213ENST00000529542 A0A087WZG4 1122 aa19.28■□□□□ 0.68
HIF3A-213ENST00000529542 KCPQ6ZWJ8 1503 aa19.28■□□□□ 0.68
HIF3A-213ENST00000529542 TEFQ10587 303 aa19.27■□□□□ 0.68
HIF3A-213ENST00000529542 NFIXQ14938 502 aa19.27■□□□□ 0.68
HIF3A-213ENST00000529542 ZBTB1Q9Y2K1 713 aa19.27■□□□□ 0.68
HIF3A-213ENST00000529542 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
HIF3A-213ENST00000529542 CHRNA5P30532 468 aa19.26■□□□□ 0.67
HIF3A-213ENST00000529542 IFFO2Q5TF58 517 aa19.26■□□□□ 0.67
HIF3A-213ENST00000529542 C16orf71Q8IYS4 520 aaPredicted RBP19.26■□□□□ 0.67
HIF3A-213ENST00000529542 RBM46Q8TBY0 533 aaKnown RBP19.26■□□□□ 0.67
HIF3A-213ENST00000529542 ZC3H4Q9UPT8 1303 aaKnown RBP19.25■□□□□ 0.67
HIF3A-213ENST00000529542 SERPINB2P05120 415 aa19.25■□□□□ 0.67
HIF3A-213ENST00000529542 NMRK2Q9NPI5 230 aa19.25■□□□□ 0.67
HIF3A-213ENST00000529542 RNF181Q9P0P0 153 aa19.25■□□□□ 0.67
HIF3A-213ENST00000529542 PDZRN3Q9UPQ7 1066 aa19.25■□□□□ 0.67
HIF3A-213ENST00000529542 U2SURPO15042 1029 aaKnown RBP19.24■□□□□ 0.67
HIF3A-213ENST00000529542 EIF5P55010 431 aaKnown RBP19.24■□□□□ 0.67
HIF3A-213ENST00000529542 ZNF790Q6PG37 636 aa19.24■□□□□ 0.67
HIF3A-213ENST00000529542 CANXP27824 592 aaKnown RBP19.23■□□□□ 0.67
HIF3A-213ENST00000529542 FSTL1Q12841 308 aa19.23■□□□□ 0.67
HIF3A-213ENST00000529542 BCL2L12Q9HB09 334 aa19.23■□□□□ 0.67
HIF3A-213ENST00000529542 TTLL6Q8N841 843 aa19.22■□□□□ 0.67
HIF3A-213ENST00000529542 IL17REQ8NFR9 667 aa19.22■□□□□ 0.67
HIF3A-213ENST00000529542 CFAP53Q96M91 514 aa19.22■□□□□ 0.67
HIF3A-213ENST00000529542 COL3A1P02461 1466 aaPredicted RBP19.22■□□□□ 0.67
HIF3A-213ENST00000529542 HEG1Q9ULI3 1381 aa19.21■□□□□ 0.67
HIF3A-213ENST00000529542 VIRMAQ69YN4 1812 aaKnown RBP19.21■□□□□ 0.67
HIF3A-213ENST00000529542 H0YIN7 160 aa19.21■□□□□ 0.67
HIF3A-213ENST00000529542 NPM2Q86SE8 214 aaKnown RBP19.21■□□□□ 0.67
HIF3A-213ENST00000529542 ZNF496Q96IT1 587 aaPredicted RBP19.21■□□□□ 0.67
HIF3A-213ENST00000529542 FMNL2Q96PY5 1086 aa19.21■□□□□ 0.67
HIF3A-213ENST00000529542 NRXN2Q9P2S2 1712 aa19.21■□□□□ 0.67
HIF3A-213ENST00000529542 UBR2Q8IWV8 1755 aa19.21■□□□□ 0.67
HIF3A-213ENST00000529542 LMNB1P20700 586 aa19.2■□□□□ 0.66
HIF3A-213ENST00000529542 IL6STP40189 918 aaPredicted RBP19.2■□□□□ 0.66
HIF3A-213ENST00000529542 NUDCQ9Y266 331 aa19.2■□□□□ 0.66
HIF3A-213ENST00000529542 CEMIPQ8WUJ3 1361 aa19.19■□□□□ 0.66
HIF3A-213ENST00000529542 PDE6BP35913 854 aa19.18■□□□□ 0.66
HIF3A-213ENST00000529542 C2CD5Q86YS7 1000 aa19.18■□□□□ 0.66
HIF3A-213ENST00000529542 DNAJC5GQ8N7S2 189 aa19.18■□□□□ 0.66
HIF3A-213ENST00000529542 BRIP1Q9BX63 1249 aa19.18■□□□□ 0.66
HIF3A-213ENST00000529542 AFDNP55196 1824 aaKnown RBP19.18■□□□□ 0.66
HIF3A-213ENST00000529542 SBF1O95248 1867 aa19.16■□□□□ 0.66
HIF3A-213ENST00000529542 BICDL1Q6ZP65 573 aa19.16■□□□□ 0.66
HIF3A-213ENST00000529542 RRAGCQ9HB90 399 aa19.16■□□□□ 0.66
HIF3A-213ENST00000529542 GLTPD2A6NH11 291 aa19.15■□□□□ 0.66
HIF3A-213ENST00000529542 BTBD11A6QL63 1104 aa19.15■□□□□ 0.66
HIF3A-213ENST00000529542 PRKAR2BP31323 418 aa19.15■□□□□ 0.66
HIF3A-213ENST00000529542 TBC1D9BQ66K14 1250 aa19.15■□□□□ 0.66
HIF3A-213ENST00000529542 CARMIL3Q8ND23 1372 aa19.15■□□□□ 0.66
HIF3A-213ENST00000529542 SMC1BQ8NDV3 1235 aa19.14■□□□□ 0.65
HIF3A-213ENST00000529542 SETDB2Q96T68 719 aa19.14■□□□□ 0.65
HIF3A-213ENST00000529542 RSPH6AQ9H0K4 717 aa19.14■□□□□ 0.65
HIF3A-213ENST00000529542 DLEC1Q9Y238 1755 aa19.14■□□□□ 0.65
HIF3A-213ENST00000529542 VEGFAP15692 232 aaPredicted RBP19.13■□□□□ 0.65
HIF3A-213ENST00000529542 RASSF7Q02833 373 aa19.13■□□□□ 0.65
HIF3A-213ENST00000529542 CNGB1Q14028 1251 aaPredicted RBP19.13■□□□□ 0.65
HIF3A-213ENST00000529542 RTF1Q92541 710 aaKnown RBP19.13■□□□□ 0.65
HIF3A-213ENST00000529542 PHACTR3Q96KR7 559 aa19.13■□□□□ 0.65
HIF3A-213ENST00000529542 TBC1D2BQ9UPU7 963 aa19.13■□□□□ 0.65
HIF3A-213ENST00000529542 ZNF330Q9Y3S2 320 aaPredicted RBP19.13■□□□□ 0.65
HIF3A-213ENST00000529542 TNRC6CQ9HCJ0 1690 aaKnown RBP19.13■□□□□ 0.65
HIF3A-213ENST00000529542 HTATSF1O43719 755 aaKnown RBP19.12■□□□□ 0.65
HIF3A-213ENST00000529542 PRR5LQ6MZQ0 368 aa19.12■□□□□ 0.65
HIF3A-213ENST00000529542 DPY19L2Q6NUT2 758 aa19.12■□□□□ 0.65
HIF3A-213ENST00000529542 CLEC4GQ6UXB4 293 aa19.12■□□□□ 0.65
HIF3A-213ENST00000529542 SIPA1L3O60292 1781 aaPredicted RBP19.11■□□□□ 0.65
HIF3A-213ENST00000529542 RGL2O15211 777 aa19.11■□□□□ 0.65
HIF3A-213ENST00000529542 NPHP1O15259 732 aa19.11■□□□□ 0.65
HIF3A-213ENST00000529542 A1BGP04217 495 aa19.11■□□□□ 0.65
HIF3A-213ENST00000529542 CNKSR1Q969H4 720 aa19.11■□□□□ 0.65
HIF3A-213ENST00000529542 ZNF622Q969S3 477 aaKnown RBP eCLIP19.11■□□□□ 0.65
HIF3A-213ENST00000529542 NFKBIEO00221 500 aa19.1■□□□□ 0.65
HIF3A-213ENST00000529542 CAMTA2O94983 1202 aa19.1■□□□□ 0.65
HIF3A-213ENST00000529542 SNRPA1P09661 255 aaKnown RBP19.1■□□□□ 0.65
HIF3A-213ENST00000529542 U2AF1L5P0DN76 240 aaPredicted RBP19.1■□□□□ 0.65
HIF3A-213ENST00000529542 ST5P78524 1137 aa19.1■□□□□ 0.65
HIF3A-213ENST00000529542 U2AF1Q01081 240 aaKnown RBP eCLIP19.1■□□□□ 0.65
HIF3A-213ENST00000529542 SOGA3Q5TF21 947 aa19.1■□□□□ 0.65
HIF3A-213ENST00000529542 DZIP3Q86Y13 1208 aaKnown RBP19.1■□□□□ 0.65
HIF3A-213ENST00000529542 CNBD1Q8NA66 436 aa19.1■□□□□ 0.65
HIF3A-213ENST00000529542 KLRG1Q96E93 195 aa19.1■□□□□ 0.65
HIF3A-213ENST00000529542 LTBP3Q9NS15 1303 aa19.09■□□□□ 0.65
HIF3A-213ENST00000529542 STYK1Q6J9G0 422 aa19.09■□□□□ 0.65
HIF3A-213ENST00000529542 ZNF652Q9Y2D9 606 aa19.09■□□□□ 0.65
HIF3A-213ENST00000529542 SCN7AQ01118 1682 aa19.08■□□□□ 0.65
HIF3A-213ENST00000529542 JMYQ8N9B5 988 aa19.08■□□□□ 0.64
HIF3A-213ENST00000529542 USP16Q9Y5T5 823 aa19.08■□□□□ 0.64
HIF3A-213ENST00000529542 WDR90Q96KV7 1748 aa19.08■□□□□ 0.64
HIF3A-213ENST00000529542 KCNQ3O43525 872 aa19.07■□□□□ 0.64
HIF3A-213ENST00000529542 PPP2R1AP30153 589 aa19.07■□□□□ 0.64
HIF3A-213ENST00000529542 PRELPP51888 382 aa19.07■□□□□ 0.64
HIF3A-213ENST00000529542 C21orf2O43822 256 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms