RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 ERVV-2B6SEH9 535 aa18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 RBM25P49756 843 aaKnown RBP18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 CABP4P57796 275 aa18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 NKX1-1Q15270 411 aaPredicted RBP18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 HSP90AB4PQ58FF6 505 aa18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 SSH3Q8TE77 659 aa18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 FMNL2Q96PY5 1086 aa18.28■□□□□ 0.52
ECHDC1-220ENST00000528402 IL2RBP14784 551 aa18.27■□□□□ 0.52
ECHDC1-220ENST00000528402 MFAP1P55081 439 aaKnown RBP18.27■□□□□ 0.52
ECHDC1-220ENST00000528402 EVA1CP58658 441 aa18.27■□□□□ 0.52
ECHDC1-220ENST00000528402 CASC1Q6TDU7 716 aa18.27■□□□□ 0.52
ECHDC1-220ENST00000528402 LRRCC1Q9C099 1032 aa18.27■□□□□ 0.52
ECHDC1-220ENST00000528402 LRRFIP2Q9Y608 721 aaKnown RBP18.27■□□□□ 0.52
ECHDC1-220ENST00000528402 USP35Q9P2H5 1018 aa18.26■□□□□ 0.51
ECHDC1-220ENST00000528402 ADCY9O60503 1353 aa18.26■□□□□ 0.51
ECHDC1-220ENST00000528402 POLA2Q14181 598 aa18.25■□□□□ 0.51
ECHDC1-220ENST00000528402 ERBB4Q15303 1308 aa18.25■□□□□ 0.51
ECHDC1-220ENST00000528402 LARP1Q6PKG0 1096 aaKnown RBP18.25■□□□□ 0.51
ECHDC1-220ENST00000528402 LINS1Q8NG48 757 aa18.25■□□□□ 0.51
ECHDC1-220ENST00000528402 MAP3K2Q9Y2U5 619 aa18.24■□□□□ 0.51
ECHDC1-220ENST00000528402 AOX1Q06278 1338 aa18.24■□□□□ 0.51
ECHDC1-220ENST00000528402 MTX1Q13505 466 aa18.23■□□□□ 0.51
ECHDC1-220ENST00000528402 PDIA6Q15084 440 aa18.23■□□□□ 0.51
ECHDC1-220ENST00000528402 PNMA6EA0A0J9YXQ4 647 aa18.23■□□□□ 0.51
ECHDC1-220ENST00000528402 NEXNQ0ZGT2 675 aa18.23■□□□□ 0.51
ECHDC1-220ENST00000528402 SLC39A6Q13433 755 aa18.23■□□□□ 0.51
ECHDC1-220ENST00000528402 TBC1D9Q6ZT07 1266 aa18.23■□□□□ 0.51
ECHDC1-220ENST00000528402 UTYO14607 1347 aa18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 GSPT1P15170 499 aaKnown RBP18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 PPP1R42Q7Z4L9 355 aa18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 C16orf71Q8IYS4 520 aaPredicted RBP18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 ZNF496Q96IT1 587 aaPredicted RBP18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 C9orf78Q9NZ63 289 aaPredicted RBP18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 STAP2Q9UGK3 403 aa18.22■□□□□ 0.51
ECHDC1-220ENST00000528402 PDE1AP54750 535 aa18.21■□□□□ 0.51
ECHDC1-220ENST00000528402 AHDC1Q5TGY3 1603 aaPredicted RBP18.2■□□□□ 0.5
ECHDC1-220ENST00000528402 SMARCA5O60264 1052 aaPredicted RBP18.2■□□□□ 0.5
ECHDC1-220ENST00000528402 PROSER3Q2NL68 480 aa18.2■□□□□ 0.5
ECHDC1-220ENST00000528402 RIC3Q7Z5B4 369 aa18.2■□□□□ 0.5
ECHDC1-220ENST00000528402 EXOC6BQ9Y2D4 811 aa18.2■□□□□ 0.5
ECHDC1-220ENST00000528402 C5P01031 1676 aa18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 ANXA1P04083 346 aa18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 NBPF7P0C2Y1 421 aaPredicted RBP18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 RTL5Q5HYW3 569 aaPredicted RBP18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 SNX21Q969T3 373 aa18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 KIF1BPQ96EK5 621 aa18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 LAMB4A4D0S4 1761 aa18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 COL14A1Q05707 1796 aaKnown RBP18.19■□□□□ 0.5
ECHDC1-220ENST00000528402 SALL3Q9BXA9 1300 aa18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 COL22A1Q8NFW1 1626 aaPredicted RBP18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 PRAMEF22A3QJZ6 481 aa18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 APBB1O00213 710 aa18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 SRGAP3O43295 1099 aa18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 SURF6O75683 361 aaKnown RBP18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 ERC1Q8IUD2 1116 aa18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 METTL22Q9BUU2 404 aaPredicted RBP18.18■□□□□ 0.5
ECHDC1-220ENST00000528402 GRM8O00222 908 aa18.17■□□□□ 0.5
ECHDC1-220ENST00000528402 SDSP20132 328 aa18.17■□□□□ 0.5
ECHDC1-220ENST00000528402 MX1P20591 662 aa18.17■□□□□ 0.5
ECHDC1-220ENST00000528402 SLC4A3P48751 1232 aa18.17■□□□□ 0.5
ECHDC1-220ENST00000528402 ANKRD13DQ6ZTN6 518 aa18.17■□□□□ 0.5
ECHDC1-220ENST00000528402 STRN4Q9NRL3 753 aa18.17■□□□□ 0.5
ECHDC1-220ENST00000528402 REC8O95072 547 aa18.16■□□□□ 0.5
ECHDC1-220ENST00000528402 USP16Q9Y5T5 823 aa18.16■□□□□ 0.5
ECHDC1-220ENST00000528402 COPS6Q7L5N1 327 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 RHPN1Q8TCX5 695 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 XAGE3Q8WTP9 111 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 TBC1D2Q9BYX2 928 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 UBR2Q8IWV8 1755 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 AIMP1Q12904 312 aaKnown RBP18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 LRP10Q7Z4F1 713 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 HSCBQ8IWL3 235 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 IL27Q8NEV9 243 aa18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 OTUD7AQ8TE49 926 aaPredicted RBP18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 TEX13AQ9BXU3 409 aaPredicted RBP18.15■□□□□ 0.5
ECHDC1-220ENST00000528402 COL15A1P39059 1388 aa18.14■□□□□ 0.5
ECHDC1-220ENST00000528402 ROBO1Q9Y6N7 1651 aa18.14■□□□□ 0.5
ECHDC1-220ENST00000528402 EPB41L2O43491 1005 aaKnown RBP18.14■□□□□ 0.49
ECHDC1-220ENST00000528402 MYL6BP14649 208 aa18.14■□□□□ 0.49
ECHDC1-220ENST00000528402 PLBD2Q8NHP8 589 aa18.14■□□□□ 0.49
ECHDC1-220ENST00000528402 SHANK3Q9BYB0 1731 aa18.13■□□□□ 0.49
ECHDC1-220ENST00000528402 NEURL1BA8MQ27 555 aa18.13■□□□□ 0.49
ECHDC1-220ENST00000528402 BTG4Q9NY30 223 aa18.13■□□□□ 0.49
ECHDC1-220ENST00000528402 PAPPAQ13219 1627 aa18.13■□□□□ 0.49
ECHDC1-220ENST00000528402 GCKRQ14397 625 aa18.12■□□□□ 0.49
ECHDC1-220ENST00000528402 VSIG10Q8N0Z9 540 aa18.12■□□□□ 0.49
ECHDC1-220ENST00000528402 DDX54Q8TDD1 881 aaKnown RBP18.12■□□□□ 0.49
ECHDC1-220ENST00000528402 CDCA7Q9BWT1 371 aaPredicted RBP18.12■□□□□ 0.49
ECHDC1-220ENST00000528402 TTC41PQ6P2S7 1318 aa18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 ERC2O15083 957 aa18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 IGKV5-2P06315 115 aa18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 CWF19L2Q2TBE0 894 aaKnown RBP18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 USP26Q9BXU7 913 aa18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 TNS2Q63HR2 1409 aa18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 USP42Q9H9J4 1324 aaKnown RBP18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 LTBP4Q8N2S1 1624 aa18.11■□□□□ 0.49
ECHDC1-220ENST00000528402 NBR1Q14596 966 aa18.1■□□□□ 0.49
ECHDC1-220ENST00000528402 CLASRPQ8N2M8 674 aaKnown RBP18.1■□□□□ 0.49
ECHDC1-220ENST00000528402 TMOD3Q9NYL9 352 aa18.1■□□□□ 0.49
ECHDC1-220ENST00000528402 TUBGCP6Q96RT7 1819 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms