RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 AFDNP55196 1824 aaKnown RBP31.98■■■□□ 2.71
CPSF1-202ENST00000527827 UBR2Q8IWV8 1755 aa31.96■■■□□ 2.71
CPSF1-202ENST00000527827 DIAPH1O60610 1272 aaKnown RBP31.96■■■□□ 2.71
CPSF1-202ENST00000527827 COL15A1P39059 1388 aa31.95■■■□□ 2.71
CPSF1-202ENST00000527827 SBF1O95248 1867 aa31.95■■■□□ 2.71
CPSF1-202ENST00000527827 NARFQ9UHQ1 456 aa31.95■■■□□ 2.71
CPSF1-202ENST00000527827 ZBTB1Q9Y2K1 713 aa31.95■■■□□ 2.71
CPSF1-202ENST00000527827 NRXN2Q9P2S2 1712 aa31.95■■■□□ 2.7
CPSF1-202ENST00000527827 CC2D1BQ5T0F9 858 aaKnown RBP31.94■■■□□ 2.7
CPSF1-202ENST00000527827 APLP1P51693 650 aa31.93■■■□□ 2.7
CPSF1-202ENST00000527827 NFIXQ14938 502 aa31.93■■■□□ 2.7
CPSF1-202ENST00000527827 VSIG10Q8N0Z9 540 aa31.92■■■□□ 2.7
CPSF1-202ENST00000527827 BCL2L12Q9HB09 334 aa31.92■■■□□ 2.7
CPSF1-202ENST00000527827 COL3A1P02461 1466 aaPredicted RBP31.91■■■□□ 2.7
CPSF1-202ENST00000527827 RNF181Q9P0P0 153 aa31.9■■■□□ 2.7
CPSF1-202ENST00000527827 DLEC1Q9Y238 1755 aa31.89■■■□□ 2.69
CPSF1-202ENST00000527827 DNAJC5GQ8N7S2 189 aa31.86■■■□□ 2.69
CPSF1-202ENST00000527827 RBM46Q8TBY0 533 aaKnown RBP31.86■■■□□ 2.69
CPSF1-202ENST00000527827 SERPINB2P05120 415 aa31.85■■■□□ 2.69
CPSF1-202ENST00000527827 CANXP27824 592 aaKnown RBP31.85■■■□□ 2.69
CPSF1-202ENST00000527827 SIPA1L3O60292 1781 aaPredicted RBP31.84■■■□□ 2.69
CPSF1-202ENST00000527827 KDM2BQ8NHM5 1336 aa31.84■■■□□ 2.69
CPSF1-202ENST00000527827 NPC1L1Q9UHC9 1359 aa31.83■■■□□ 2.69
CPSF1-202ENST00000527827 WDR90Q96KV7 1748 aa31.83■■■□□ 2.69
CPSF1-202ENST00000527827 EIF5P55010 431 aaKnown RBP31.82■■■□□ 2.68
CPSF1-202ENST00000527827 RASSF7Q02833 373 aa31.82■■■□□ 2.68
CPSF1-202ENST00000527827 TTC5Q8N0Z6 440 aa31.82■■■□□ 2.68
CPSF1-202ENST00000527827 IL17REQ8NFR9 667 aa31.82■■■□□ 2.68
CPSF1-202ENST00000527827 TNRC6CQ9HCJ0 1690 aaKnown RBP31.82■■■□□ 2.68
CPSF1-202ENST00000527827 C16orf71Q8IYS4 520 aaPredicted RBP31.81■■■□□ 2.68
CPSF1-202ENST00000527827 ZNF496Q96IT1 587 aaPredicted RBP31.81■■■□□ 2.68
CPSF1-202ENST00000527827 CARMIL3Q8ND23 1372 aa31.81■■■□□ 2.68
CPSF1-202ENST00000527827 U2SURPO15042 1029 aaKnown RBP31.8■■■□□ 2.68
CPSF1-202ENST00000527827 STARD3NLO95772 234 aa31.8■■■□□ 2.68
CPSF1-202ENST00000527827 RRAGCQ9HB90 399 aa31.8■■■□□ 2.68
CPSF1-202ENST00000527827 HEG1Q9ULI3 1381 aa31.79■■■□□ 2.68
CPSF1-202ENST00000527827 GNAT3A8MTJ3 354 aa31.78■■■□□ 2.68
CPSF1-202ENST00000527827 CNGB1Q14028 1251 aaPredicted RBP31.78■■■□□ 2.68
CPSF1-202ENST00000527827 ZNF790Q6PG37 636 aa31.78■■■□□ 2.68
CPSF1-202ENST00000527827 GAS2L2Q8NHY3 880 aa31.78■■■□□ 2.68
CPSF1-202ENST00000527827 PRELPP51888 382 aa31.77■■■□□ 2.68
CPSF1-202ENST00000527827 TEFQ10587 303 aa31.77■■■□□ 2.68
CPSF1-202ENST00000527827 BICDL1Q6ZP65 573 aa31.77■■■□□ 2.68
CPSF1-202ENST00000527827 C2CD5Q86YS7 1000 aa31.77■■■□□ 2.68
CPSF1-202ENST00000527827 TTLL6Q8N841 843 aa31.77■■■□□ 2.68
CPSF1-202ENST00000527827 ANKRD31Q8N7Z5 1873 aa31.77■■■□□ 2.68
CPSF1-202ENST00000527827 SCN7AQ01118 1682 aa31.76■■■□□ 2.68
CPSF1-202ENST00000527827 CCDC88AQ3V6T2 1871 aa31.76■■■□□ 2.68
CPSF1-202ENST00000527827 A0A087WZG4 1122 aa31.76■■■□□ 2.67
CPSF1-202ENST00000527827 FSTL1Q12841 308 aa31.76■■■□□ 2.67
CPSF1-202ENST00000527827 ZC3H4Q9UPT8 1303 aaKnown RBP31.75■■■□□ 2.67
CPSF1-202ENST00000527827 TBC1D9BQ66K14 1250 aa31.74■■■□□ 2.67
CPSF1-202ENST00000527827 H0YIN7 160 aa31.73■■■□□ 2.67
CPSF1-202ENST00000527827 LMNB1P20700 586 aa31.73■■■□□ 2.67
CPSF1-202ENST00000527827 TEX13AQ9BXU3 409 aaPredicted RBP31.73■■■□□ 2.67
CPSF1-202ENST00000527827 HTRA3P83110 453 aa31.72■■■□□ 2.67
CPSF1-202ENST00000527827 CEMIPQ8WUJ3 1361 aa31.71■■■□□ 2.67
CPSF1-202ENST00000527827 TBC1D2BQ9UPU7 963 aa31.71■■■□□ 2.67
CPSF1-202ENST00000527827 TIAM2Q8IVF5 1701 aa31.71■■■□□ 2.67
CPSF1-202ENST00000527827 IL6STP40189 918 aaPredicted RBP31.7■■■□□ 2.67
CPSF1-202ENST00000527827 PHACTR3Q96KR7 559 aa31.7■■■□□ 2.67
CPSF1-202ENST00000527827 NFKBIEO00221 500 aa31.69■■■□□ 2.66
CPSF1-202ENST00000527827 FMNL2Q96PY5 1086 aa31.69■■■□□ 2.66
CPSF1-202ENST00000527827 COL11A2P13942 1736 aaPredicted RBP31.69■■■□□ 2.66
CPSF1-202ENST00000527827 ZNF330Q9Y3S2 320 aaPredicted RBP31.68■■■□□ 2.66
CPSF1-202ENST00000527827 GLTPD2A6NH11 291 aa31.67■■■□□ 2.66
CPSF1-202ENST00000527827 KCNQ3O43525 872 aa31.67■■■□□ 2.66
CPSF1-202ENST00000527827 A1BGP04217 495 aa31.67■■■□□ 2.66
CPSF1-202ENST00000527827 PRR5LQ6MZQ0 368 aa31.67■■■□□ 2.66
CPSF1-202ENST00000527827 PRKAR2BP31323 418 aa31.66■■■□□ 2.66
CPSF1-202ENST00000527827 CCDC24Q8N4L8 307 aa31.66■■■□□ 2.66
CPSF1-202ENST00000527827 KLRG1Q96E93 195 aa31.66■■■□□ 2.66
CPSF1-202ENST00000527827 BRIP1Q9BX63 1249 aa31.66■■■□□ 2.66
CPSF1-202ENST00000527827 RSPH6AQ9H0K4 717 aa31.66■■■□□ 2.66
CPSF1-202ENST00000527827 SMC1BQ8NDV3 1235 aa31.65■■■□□ 2.66
CPSF1-202ENST00000527827 BCORQ6W2J9 1755 aa31.64■■■□□ 2.66
CPSF1-202ENST00000527827 ZNF622Q969S3 477 aaKnown RBP eCLIP31.64■■■□□ 2.663e-13■■■■□ 20.2
CPSF1-202ENST00000527827 PDZRN3Q9UPQ7 1066 aa31.64■■■□□ 2.66
CPSF1-202ENST00000527827 FER1L6Q2WGJ9 1857 aa31.63■■■□□ 2.65
CPSF1-202ENST00000527827 BTBD11A6QL63 1104 aa31.63■■■□□ 2.65
CPSF1-202ENST00000527827 CAMTA2O94983 1202 aa31.63■■■□□ 2.65
CPSF1-202ENST00000527827 PDE6BP35913 854 aa31.63■■■□□ 2.65
CPSF1-202ENST00000527827 DICER1Q9UPY3 1922 aaKnown RBP31.61■■■□□ 2.65
CPSF1-202ENST00000527827 VEGFAP15692 232 aaPredicted RBP31.61■■■□□ 2.65
CPSF1-202ENST00000527827 JMYQ8N9B5 988 aa31.61■■■□□ 2.65
CPSF1-202ENST00000527827 CFAP53Q96M91 514 aa31.61■■■□□ 2.65
CPSF1-202ENST00000527827 C21orf2O43822 256 aa31.6■■■□□ 2.65
CPSF1-202ENST00000527827 SETDB2Q96T68 719 aa31.59■■■□□ 2.65
CPSF1-202ENST00000527827 ZNF219Q9P2Y4 722 aaPredicted RBP31.59■■■□□ 2.65
CPSF1-202ENST00000527827 USP16Q9Y5T5 823 aa31.59■■■□□ 2.65
CPSF1-202ENST00000527827 CACNA1SQ13698 1873 aa31.58■■■□□ 2.65
CPSF1-202ENST00000527827 SLX4Q8IY92 1834 aa31.58■■■□□ 2.65
CPSF1-202ENST00000527827 NPM2Q86SE8 214 aaKnown RBP31.57■■■□□ 2.64
CPSF1-202ENST00000527827 DZIP3Q86Y13 1208 aaKnown RBP31.57■■■□□ 2.64
CPSF1-202ENST00000527827 CNBD1Q8NA66 436 aa31.57■■■□□ 2.64
CPSF1-202ENST00000527827 PRAMEF22A3QJZ6 481 aa31.56■■■□□ 2.64
CPSF1-202ENST00000527827 POTECB2RU33 542 aa31.56■■■□□ 2.64
CPSF1-202ENST00000527827 PIP4K2AP48426 406 aaPredicted RBP31.56■■■□□ 2.64
CPSF1-202ENST00000527827 NUDCQ9Y266 331 aa31.55■■■□□ 2.64
CPSF1-202ENST00000527827 ARFGEF2Q9Y6D5 1785 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms